Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 UBBP3-201ENST00000445497 241 ntBASIC2.22□□□□□ -2.05
LMX1BO60663 MTND4LP30-201ENST00000454092 297 ntBASIC2.22□□□□□ -2.05
LMX1BO60663 HSPE1P25-201ENST00000455484 251 ntBASIC2.22□□□□□ -2.05
LMX1BO60663 RPS27P26-201ENST00000494583 239 ntBASIC2.22□□□□□ -2.05
LMX1BO60663 RNU6-1023P-201ENST00000516137 106 ntBASIC2.22□□□□□ -2.05
LMX1BO60663 RNU6-496P-201ENST00000516145 99 ntBASIC2.22□□□□□ -2.05
LMX1BO60663 RNU1-41P-201ENST00000516161 162 ntBASIC2.22□□□□□ -2.05
LMX1BO60663 RNU1-48P-201ENST00000516400 162 ntBASIC2.22□□□□□ -2.05
LMX1BO60663 Y_RNA.713-201ENST00000517013 96 ntBASIC2.22□□□□□ -2.05
LMX1BO60663 AC079598.5-201ENST00000547460 117 ntBASIC2.22□□□□□ -2.05
LMX1BO60663 CYP4A27P-201ENST00000567218 190 ntBASIC2.22□□□□□ -2.05
LMX1BO60663 MIR3670-2-201ENST00000582974 65 ntBASIC2.22□□□□□ -2.05
LMX1BO60663 MIR3670-1-201ENST00000584160 65 ntBASIC2.22□□□□□ -2.05
LMX1BO60663 MIR3670-3-201ENST00000584855 65 ntBASIC2.22□□□□□ -2.05
LMX1BO60663 Y_RNA.772-201ENST00000606692 102 ntBASIC2.22□□□□□ -2.05
LMX1BO60663 MIR3670-4-201ENST00000612260 65 ntBASIC2.22□□□□□ -2.05
LMX1BO60663 MIR7843-201ENST00000622274 79 ntBASIC2.22□□□□□ -2.05
LMX1BO60663 MTND5P6-201ENST00000422338 1798 ntBASIC2.21□□□□□ -2.06
LMX1BO60663 BX322639.1-202ENST00000423987 2213 ntBASIC2.21□□□□□ -2.06
LMX1BO60663 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.21□□□□□ -2.06
LMX1BO60663 MIR335-201ENST00000362173 94 ntBASIC2.21□□□□□ -2.06
LMX1BO60663 Y_RNA.257-201ENST00000364596 102 ntBASIC2.21□□□□□ -2.06
LMX1BO60663 Y_RNA.286-201ENST00000364813 102 ntBASIC2.21□□□□□ -2.06
LMX1BO60663 Y_RNA.477-201ENST00000384352 108 ntBASIC2.21□□□□□ -2.06
LMX1BO60663 Y_RNA.539-201ENST00000384635 107 ntBASIC2.21□□□□□ -2.06
LMX1BO60663 RNU6-541P-201ENST00000384709 110 ntBASIC2.21□□□□□ -2.06
LMX1BO60663 MIR186-201ENST00000384988 86 ntBASIC2.21□□□□□ -2.06
LMX1BO60663 MIR504-201ENST00000385065 83 ntBASIC2.21□□□□□ -2.06
LMX1BO60663 CBX3P9-201ENST00000402326 552 ntBASIC2.21□□□□□ -2.06
LMX1BO60663 FO393413.1-201ENST00000402892 195 ntBASIC2.21□□□□□ -2.06
LMX1BO60663 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.21□□□□□ -2.06
LMX1BO60663 AC012308.1-201ENST00000451232 178 ntBASIC2.21□□□□□ -2.06
LMX1BO60663 snoU13.26-201ENST00000459452 105 ntBASIC2.21□□□□□ -2.06
LMX1BO60663 AL121594.1-201ENST00000475906 575 ntBASIC2.21□□□□□ -2.06
LMX1BO60663 RNU6-237P-201ENST00000515985 71 ntBASIC2.21□□□□□ -2.06
LMX1BO60663 Y_RNA.673-201ENST00000516306 88 ntBASIC2.21□□□□□ -2.06
LMX1BO60663 RNU6-567P-201ENST00000516746 107 ntBASIC2.21□□□□□ -2.06
LMX1BO60663 AC055872.1-201ENST00000570978 278 ntBASIC2.21□□□□□ -2.06
LMX1BO60663 MIR3136-201ENST00000583498 78 ntBASIC2.21□□□□□ -2.06
LMX1BO60663 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC2.21□□□□□ -2.06
LMX1BO60663 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.21□□□□□ -2.06
LMX1BO60663 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.21□□□□□ -2.06
LMX1BO60663 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.21□□□□□ -2.06
LMX1BO60663 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.21□□□□□ -2.06
LMX1BO60663 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
LMX1BO60663 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.21□□□□□ -2.06
LMX1BO60663 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.2□□□□□ -2.06
LMX1BO60663 AL109809.4-201ENST00000603520 2185 ntBASIC2.2□□□□□ -2.06
LMX1BO60663 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
LMX1BO60663 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.2□□□□□ -2.06
LMX1BO60663 SNORD113-8-201ENST00000363497 74 ntBASIC2.2□□□□□ -2.06
LMX1BO60663 Y_RNA.489-201ENST00000384410 101 ntBASIC2.2□□□□□ -2.06
LMX1BO60663 SNORD58.1-201ENST00000391313 66 ntBASIC2.2□□□□□ -2.06
LMX1BO60663 RNU2-14P-201ENST00000411053 191 ntBASIC2.2□□□□□ -2.06
LMX1BO60663 RNU6-847P-201ENST00000411115 108 ntBASIC2.2□□□□□ -2.06
LMX1BO60663 AC004866.1-201ENST00000411748 78 ntBASIC2.2□□□□□ -2.06
LMX1BO60663 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.2□□□□□ -2.06
LMX1BO60663 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.2□□□□□ -2.06
LMX1BO60663 AC112771.1-201ENST00000463581 102 ntBASIC2.2□□□□□ -2.06
LMX1BO60663 RPL39P38-201ENST00000467018 153 ntBASIC2.2□□□□□ -2.06
LMX1BO60663 RPS23P5-201ENST00000495419 428 ntBASIC2.2□□□□□ -2.06
LMX1BO60663 RNU6-1338P-201ENST00000516328 91 ntBASIC2.2□□□□□ -2.06
LMX1BO60663 RNU6-966P-201ENST00000516479 104 ntBASIC2.2□□□□□ -2.06
LMX1BO60663 RNU6-1198P-201ENST00000516904 67 ntBASIC2.2□□□□□ -2.06
LMX1BO60663 RNA5SP54-201ENST00000516951 92 ntBASIC2.2□□□□□ -2.06
LMX1BO60663 DEFB108E-201ENST00000524692 240 ntBASIC2.2□□□□□ -2.06
LMX1BO60663 DEFB131C-201ENST00000528817 165 ntBASIC2.2□□□□□ -2.06
LMX1BO60663 MDM2-232ENST00000544561 213 ntTSL 5 BASIC2.2□□□□□ -2.06
LMX1BO60663 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.2□□□□□ -2.06
LMX1BO60663 MZT1P2-201ENST00000604387 248 ntBASIC2.2□□□□□ -2.06
LMX1BO60663 AL034555.1-201ENST00000604816 211 ntBASIC2.2□□□□□ -2.06
LMX1BO60663 AL138963.2-201ENST00000605137 226 ntBASIC2.2□□□□□ -2.06
LMX1BO60663 PCGEM1.1-201ENST00000613431 131 ntBASIC2.2□□□□□ -2.06
LMX1BO60663 AC127459.3-201ENST00000624328 466 ntBASIC2.2□□□□□ -2.06
LMX1BO60663 CTSLP2-204ENST00000629029 392 ntBASIC2.2□□□□□ -2.06
LMX1BO60663 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.2□□□□□ -2.06
LMX1BO60663 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.2□□□□□ -2.06
LMX1BO60663 ZNF204P-201ENST00000416749 2397 ntBASIC2.2□□□□□ -2.06
LMX1BO60663 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
LMX1BO60663 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC2.19□□□□□ -2.06
LMX1BO60663 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
LMX1BO60663 Y_RNA.20-201ENST00000362479 113 ntBASIC2.19□□□□□ -2.06
LMX1BO60663 RNU6-1159P-201ENST00000362933 107 ntBASIC2.19□□□□□ -2.06
LMX1BO60663 SNORD81.1-201ENST00000363064 77 ntBASIC2.19□□□□□ -2.06
LMX1BO60663 SNORD114-19-201ENST00000363072 75 ntBASIC2.19□□□□□ -2.06
LMX1BO60663 VTRNA1-1-201ENST00000363120 99 ntBASIC2.19□□□□□ -2.06
LMX1BO60663 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.19□□□□□ -2.06
LMX1BO60663 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
LMX1BO60663 Y_RNA.462-201ENST00000384268 102 ntBASIC2.19□□□□□ -2.06
LMX1BO60663 MIR147B-201ENST00000390185 80 ntBASIC2.19□□□□□ -2.06
LMX1BO60663 AC138623.1-201ENST00000418060 216 ntBASIC2.19□□□□□ -2.06
LMX1BO60663 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.19□□□□□ -2.06
LMX1BO60663 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.19□□□□□ -2.06
LMX1BO60663 SEM1P1-201ENST00000506694 209 ntBASIC2.19□□□□□ -2.06
LMX1BO60663 SNORA40.9-201ENST00000515895 93 ntBASIC2.19□□□□□ -2.06
LMX1BO60663 SCARNA17.1-201ENST00000516211 143 ntBASIC2.19□□□□□ -2.06
LMX1BO60663 SCARNA17.2-201ENST00000516334 143 ntBASIC2.19□□□□□ -2.06
LMX1BO60663 RNU6-111P-201ENST00000517179 105 ntBASIC2.19□□□□□ -2.06
LMX1BO60663 AC105137.2-201ENST00000569073 466 ntBASIC2.19□□□□□ -2.06
LMX1BO60663 MIR4643-201ENST00000577473 78 ntBASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms