Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 SNORA12.1-201ENST00000390873 148 ntBASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 MRPL42P3-201ENST00000401492 326 ntBASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 RNU6-1304P-201ENST00000411374 106 ntBASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 HIGD1AP15-201ENST00000416198 280 ntBASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 ZNF885P-201ENST00000420174 1098 ntBASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 AC079382.1-201ENST00000493346 557 ntBASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 AC109445.1-201ENST00000512356 383 ntBASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 RNU7-12P-201ENST00000516030 62 ntBASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 RNU6-1278P-201ENST00000516130 107 ntBASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 SNORA25.7-201ENST00000364375 127 ntBASIC-1□□□□□ -2.57
CCDC88BA6NC98 MIR1253-201ENST00000408273 105 ntBASIC-1□□□□□ -2.57
CCDC88BA6NC98 RNA5SP118-201ENST00000410385 109 ntBASIC-1□□□□□ -2.57
CCDC88BA6NC98 CDK8P2-201ENST00000415020 547 ntBASIC-1□□□□□ -2.57
CCDC88BA6NC98 AL590135.1-201ENST00000422215 156 ntBASIC-1□□□□□ -2.57
CCDC88BA6NC98 AC019205.3-201ENST00000424573 156 ntBASIC-1□□□□□ -2.57
CCDC88BA6NC98 AC016700.2-201ENST00000446011 156 ntBASIC-1□□□□□ -2.57
CCDC88BA6NC98 AC015911.1-201ENST00000495111 156 ntBASIC-1□□□□□ -2.57
CCDC88BA6NC98 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC-1□□□□□ -2.57
CCDC88BA6NC98 AC068790.2-201ENST00000602601 557 ntBASIC-1□□□□□ -2.57
CCDC88BA6NC98 RNU6-369P-201ENST00000362515 102 ntBASIC-1.01□□□□□ -2.57
CCDC88BA6NC98 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC-1.01□□□□□ -2.57
CCDC88BA6NC98 AP000870.1-201ENST00000472927 406 ntBASIC-1.01□□□□□ -2.57
CCDC88BA6NC98 RNU6-1069P-201ENST00000516612 133 ntBASIC-1.01□□□□□ -2.57
CCDC88BA6NC98 OR8K2P-201ENST00000524645 927 ntBASIC-1.01□□□□□ -2.57
CCDC88BA6NC98 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC-1.01□□□□□ -2.57
CCDC88BA6NC98 AC138869.1-201ENST00000568623 124 ntBASIC-1.01□□□□□ -2.57
CCDC88BA6NC98 MIR4263-201ENST00000584745 83 ntBASIC-1.01□□□□□ -2.57
CCDC88BA6NC98 Y_RNA.287-201ENST00000364853 94 ntBASIC-1.02□□□□□ -2.57
CCDC88BA6NC98 RNU6-142P-201ENST00000384019 107 ntBASIC-1.02□□□□□ -2.57
CCDC88BA6NC98 MTCO2P31-201ENST00000402702 684 ntBASIC-1.02□□□□□ -2.57
CCDC88BA6NC98 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC-1.02□□□□□ -2.57
CCDC88BA6NC98 RPL39P34-201ENST00000477141 156 ntBASIC-1.02□□□□□ -2.57
CCDC88BA6NC98 RPL17P19-201ENST00000489069 552 ntBASIC-1.02□□□□□ -2.57
CCDC88BA6NC98 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC-1.02□□□□□ -2.57
CCDC88BA6NC98 AP000811.1-201ENST00000603803 651 ntBASIC-1.02□□□□□ -2.57
CCDC88BA6NC98 AL450472.1-202ENST00000637286 180 ntBASIC-1.02□□□□□ -2.57
CCDC88BA6NC98 SNORA36.1-201ENST00000363424 132 ntBASIC-1.03□□□□□ -2.57
CCDC88BA6NC98 RNU6-701P-201ENST00000384059 107 ntBASIC-1.03□□□□□ -2.57
CCDC88BA6NC98 RNU6-925P-201ENST00000384629 104 ntBASIC-1.03□□□□□ -2.57
CCDC88BA6NC98 RNY1P7-201ENST00000384743 110 ntBASIC-1.03□□□□□ -2.57
CCDC88BA6NC98 SNORA26-201ENST00000391286 122 ntBASIC-1.03□□□□□ -2.57
CCDC88BA6NC98 RNU4-30P-201ENST00000410245 143 ntBASIC-1.03□□□□□ -2.57
CCDC88BA6NC98 RNA5SP95-201ENST00000410319 137 ntBASIC-1.03□□□□□ -2.57
CCDC88BA6NC98 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC-1.03□□□□□ -2.57
CCDC88BA6NC98 EEF1E1P1-201ENST00000446998 430 ntBASIC-1.03□□□□□ -2.57
CCDC88BA6NC98 AC113347.3-201ENST00000509113 148 ntBASIC-1.03□□□□□ -2.57
CCDC88BA6NC98 SNORA43.2-201ENST00000516652 128 ntBASIC-1.03□□□□□ -2.57
CCDC88BA6NC98 AC026616.1-201ENST00000523157 525 ntBASIC-1.03□□□□□ -2.57
CCDC88BA6NC98 AC115990.1-201ENST00000526957 301 ntBASIC-1.03□□□□□ -2.57
CCDC88BA6NC98 TMF1P1-201ENST00000576058 373 ntBASIC-1.03□□□□□ -2.57
CCDC88BA6NC98 MIR1273C-201ENST00000578669 77 ntBASIC-1.03□□□□□ -2.57
CCDC88BA6NC98 AC007948.1-201ENST00000581632 242 ntTSL 5 BASIC-1.03□□□□□ -2.57
CCDC88BA6NC98 AC012507.3-201ENST00000603556 477 ntBASIC-1.03□□□□□ -2.57
CCDC88BA6NC98 RNU6-839P-201ENST00000363347 108 ntBASIC-1.04□□□□□ -2.58
CCDC88BA6NC98 RNU6-1097P-201ENST00000363586 107 ntBASIC-1.04□□□□□ -2.58
CCDC88BA6NC98 RNU6-187P-201ENST00000384139 106 ntBASIC-1.04□□□□□ -2.58
CCDC88BA6NC98 U8.16-201ENST00000391279 133 ntBASIC-1.04□□□□□ -2.58
CCDC88BA6NC98 MIR1305-201ENST00000408300 86 ntBASIC-1.04□□□□□ -2.58
CCDC88BA6NC98 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC-1.04□□□□□ -2.58
CCDC88BA6NC98 USP9YP11-201ENST00000427537 717 ntBASIC-1.04□□□□□ -2.58
CCDC88BA6NC98 AC005002.2-201ENST00000438228 269 ntBASIC-1.04□□□□□ -2.58
CCDC88BA6NC98 UBE2Q2P8-201ENST00000560644 102 ntBASIC-1.04□□□□□ -2.58
CCDC88BA6NC98 AC078795.3-201ENST00000602913 472 ntBASIC-1.04□□□□□ -2.58
CCDC88BA6NC98 AC104073.3-201ENST00000610942 955 ntBASIC-1.04□□□□□ -2.58
CCDC88BA6NC98 uc_338.28-201ENST00000612082 187 ntBASIC-1.04□□□□□ -2.58
CCDC88BA6NC98 AL359634.1-202ENST00000404721 284 ntBASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 RPS3AP3-201ENST00000411933 242 ntBASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 AC006366.1-201ENST00000422002 759 ntBASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 AC002542.1-201ENST00000440683 193 ntBASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 AC005042.3-201ENST00000453230 174 ntBASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 AHI1-208ENST00000488690 712 ntTSL 5 BASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 AC022447.4-201ENST00000504053 364 ntBASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 RNU6-180P-201ENST00000516697 61 ntBASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 MTND1P36-201ENST00000522384 936 ntBASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 NEAT1_2.1-201ENST00000620525 105 ntBASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 AC090617.9-201ENST00000623751 147 ntBASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 SNORD98-201ENST00000636377 67 ntBASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 MIR1322-201ENST00000638013 71 ntBASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 Y_RNA.33-201ENST00000362591 102 ntBASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 RNU6-934P-201ENST00000365154 107 ntBASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 MIR587-201ENST00000384845 96 ntBASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 Y_RNA.623-201ENST00000411128 95 ntBASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 CALM2P4-201ENST00000430810 426 ntBASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 USP9YP25-201ENST00000457708 443 ntBASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 RNU6-948P-201ENST00000516374 107 ntBASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 RNU6-1315P-201ENST00000517187 99 ntBASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 RNU2-60P-201ENST00000517290 128 ntBASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC-1.05□□□□□ -2.58
CCDC88BA6NC98 DEFB131D-201ENST00000526803 184 ntBASIC-1.05□□□□□ -2.58
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms