Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 RNU7-121P-201ENST00000516604 62 ntBASIC4.2□□□□□ -1.74
CHMP3Q9Y3E7 RNU6-344P-201ENST00000516635 111 ntBASIC4.2□□□□□ -1.74
CHMP3Q9Y3E7 SNORA70.19-201ENST00000516717 90 ntBASIC4.2□□□□□ -1.74
CHMP3Q9Y3E7 RNU6-453P-201ENST00000516819 85 ntBASIC4.2□□□□□ -1.74
CHMP3Q9Y3E7 RN7SKP57-201ENST00000517248 293 ntBASIC4.2□□□□□ -1.74
CHMP3Q9Y3E7 EIF4A1P12-201ENST00000551910 141 ntBASIC4.2□□□□□ -1.74
CHMP3Q9Y3E7 MIR4744-201ENST00000581563 82 ntBASIC4.2□□□□□ -1.74
CHMP3Q9Y3E7 MIR7112-201ENST00000616126 65 ntBASIC4.2□□□□□ -1.74
CHMP3Q9Y3E7 AC010332.2-201ENST00000613083 1904 ntBASIC4.2□□□□□ -1.74
CHMP3Q9Y3E7 AL513302.2-201ENST00000562313 1842 ntBASIC4.2□□□□□ -1.74
CHMP3Q9Y3E7 AK9-203ENST00000368948 2478 ntTSL 5 BASIC4.2□□□□□ -1.74
CHMP3Q9Y3E7 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CHMP3Q9Y3E7 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CHMP3Q9Y3E7 Z83843.1-201ENST00000604070 3685 ntBASIC4.19□□□□□ -1.74
CHMP3Q9Y3E7 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
CHMP3Q9Y3E7 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC4.19□□□□□ -1.74
CHMP3Q9Y3E7 RNU1-75P-201ENST00000347264 129 ntBASIC4.19□□□□□ -1.74
CHMP3Q9Y3E7 SNORA72.4-201ENST00000384174 132 ntBASIC4.19□□□□□ -1.74
CHMP3Q9Y3E7 MIR626-201ENST00000385032 94 ntBASIC4.19□□□□□ -1.74
CHMP3Q9Y3E7 EBAG9P1-201ENST00000418955 543 ntBASIC4.19□□□□□ -1.74
CHMP3Q9Y3E7 RN7SKP164-201ENST00000516138 266 ntBASIC4.19□□□□□ -1.74
CHMP3Q9Y3E7 RNU6-971P-201ENST00000516920 106 ntBASIC4.19□□□□□ -1.74
CHMP3Q9Y3E7 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC4.19□□□□□ -1.74
CHMP3Q9Y3E7 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC4.19□□□□□ -1.74
CHMP3Q9Y3E7 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC4.19□□□□□ -1.74
CHMP3Q9Y3E7 MIR4431-201ENST00000579990 94 ntBASIC4.19□□□□□ -1.74
CHMP3Q9Y3E7 TCL6_2.1-201ENST00000615162 119 ntBASIC4.19□□□□□ -1.74
CHMP3Q9Y3E7 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CHMP3Q9Y3E7 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CHMP3Q9Y3E7 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CHMP3Q9Y3E7 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
CHMP3Q9Y3E7 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC4.18□□□□□ -1.74
CHMP3Q9Y3E7 Y_RNA.24-201ENST00000362508 103 ntBASIC4.18□□□□□ -1.74
CHMP3Q9Y3E7 Y_RNA.218-201ENST00000364218 104 ntBASIC4.18□□□□□ -1.74
CHMP3Q9Y3E7 Y_RNA.287-201ENST00000364853 94 ntBASIC4.18□□□□□ -1.74
CHMP3Q9Y3E7 SNORA1.3-201ENST00000384676 136 ntBASIC4.18□□□□□ -1.74
CHMP3Q9Y3E7 AC010099.1-201ENST00000455434 375 ntBASIC4.18□□□□□ -1.74
CHMP3Q9Y3E7 RN7SL807P-201ENST00000470923 297 ntBASIC4.18□□□□□ -1.74
CHMP3Q9Y3E7 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC4.18□□□□□ -1.74
CHMP3Q9Y3E7 RNU1-61P-201ENST00000516107 151 ntBASIC4.18□□□□□ -1.74
CHMP3Q9Y3E7 NDUFB9P3-201ENST00000521269 501 ntBASIC4.18□□□□□ -1.74
CHMP3Q9Y3E7 AP000867.2-201ENST00000532468 320 ntBASIC4.18□□□□□ -1.74
CHMP3Q9Y3E7 AC022616.8-201ENST00000533569 253 ntBASIC4.18□□□□□ -1.74
CHMP3Q9Y3E7 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC4.18□□□□□ -1.74
CHMP3Q9Y3E7 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
CHMP3Q9Y3E7 AC007256.1-201ENST00000392253 2765 ntBASIC4.18□□□□□ -1.74
CHMP3Q9Y3E7 TNPO1P3-201ENST00000436471 2662 ntBASIC4.18□□□□□ -1.74
CHMP3Q9Y3E7 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CHMP3Q9Y3E7 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CHMP3Q9Y3E7 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
CHMP3Q9Y3E7 RNU6-1010P-201ENST00000362757 107 ntBASIC4.17□□□□□ -1.74
CHMP3Q9Y3E7 RNU6ATAC10P-201ENST00000408635 111 ntBASIC4.17□□□□□ -1.74
CHMP3Q9Y3E7 RN7SKP111-201ENST00000410349 271 ntBASIC4.17□□□□□ -1.74
CHMP3Q9Y3E7 MTND4LP9-201ENST00000427694 174 ntBASIC4.17□□□□□ -1.74
CHMP3Q9Y3E7 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC4.17□□□□□ -1.74
CHMP3Q9Y3E7 snoU13.14-201ENST00000459372 104 ntBASIC4.17□□□□□ -1.74
CHMP3Q9Y3E7 SNORD19.2-201ENST00000516978 73 ntBASIC4.17□□□□□ -1.74
CHMP3Q9Y3E7 MIR5680-201ENST00000577577 84 ntBASIC4.17□□□□□ -1.74
CHMP3Q9Y3E7 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
CHMP3Q9Y3E7 AC009975.1-201ENST00000634588 2698 ntTSL 5 BASIC4.17□□□□□ -1.74
CHMP3Q9Y3E7 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CHMP3Q9Y3E7 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC4.16□□□□□ -1.74
CHMP3Q9Y3E7 TTN-204ENST00000360870 18218 ntTSL 5 BASIC4.16□□□□□ -1.74
CHMP3Q9Y3E7 AC010889.1-201ENST00000566193 2666 ntBASIC4.16□□□□□ -1.74
CHMP3Q9Y3E7 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.16□□□□□ -1.74
CHMP3Q9Y3E7 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CHMP3Q9Y3E7 RNU6-525P-201ENST00000363685 104 ntBASIC4.16□□□□□ -1.74
CHMP3Q9Y3E7 U3.9-201ENST00000363823 204 ntBASIC4.16□□□□□ -1.74
CHMP3Q9Y3E7 Y_RNA.243-201ENST00000364481 109 ntBASIC4.16□□□□□ -1.74
CHMP3Q9Y3E7 SNORD20-201ENST00000384550 80 ntBASIC4.16□□□□□ -1.74
CHMP3Q9Y3E7 SNORA8.3-201ENST00000384679 139 ntBASIC4.16□□□□□ -1.74
CHMP3Q9Y3E7 MIR591-201ENST00000385290 95 ntBASIC4.16□□□□□ -1.74
CHMP3Q9Y3E7 SNORA12-201ENST00000391162 147 ntBASIC4.16□□□□□ -1.74
CHMP3Q9Y3E7 RNU6-855P-201ENST00000410395 104 ntBASIC4.16□□□□□ -1.74
CHMP3Q9Y3E7 AC126124.2-201ENST00000413542 321 ntBASIC4.16□□□□□ -1.74
CHMP3Q9Y3E7 RPL30P14-201ENST00000482744 348 ntBASIC4.16□□□□□ -1.74
CHMP3Q9Y3E7 RNU6-1007P-201ENST00000516586 107 ntBASIC4.16□□□□□ -1.74
CHMP3Q9Y3E7 RNU2-44P-201ENST00000516795 194 ntBASIC4.16□□□□□ -1.74
CHMP3Q9Y3E7 AC016597.1-201ENST00000564893 528 ntTSL 4 BASIC4.16□□□□□ -1.74
CHMP3Q9Y3E7 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC4.16□□□□□ -1.74
CHMP3Q9Y3E7 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC4.15□□□□□ -1.74
CHMP3Q9Y3E7 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.74
CHMP3Q9Y3E7 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.74
CHMP3Q9Y3E7 snoU2_19.1-201ENST00000362361 80 ntBASIC4.15□□□□□ -1.75
CHMP3Q9Y3E7 SNORD114-19-201ENST00000363072 75 ntBASIC4.15□□□□□ -1.75
CHMP3Q9Y3E7 RNU6-198P-201ENST00000384258 104 ntBASIC4.15□□□□□ -1.75
CHMP3Q9Y3E7 SNORA67.2-201ENST00000384300 149 ntBASIC4.15□□□□□ -1.75
CHMP3Q9Y3E7 SNORA40-201ENST00000388090 126 ntBASIC4.15□□□□□ -1.75
CHMP3Q9Y3E7 RN7SL504P-201ENST00000494496 287 ntBASIC4.15□□□□□ -1.75
CHMP3Q9Y3E7 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC4.15□□□□□ -1.75
CHMP3Q9Y3E7 AC109810.1-201ENST00000534066 224 ntBASIC4.15□□□□□ -1.75
CHMP3Q9Y3E7 AC099778.2-201ENST00000610904 211 ntBASIC4.15□□□□□ -1.75
CHMP3Q9Y3E7 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC4.15□□□□□ -1.75
CHMP3Q9Y3E7 AL356274.2-201ENST00000624379 3752 ntBASIC4.14□□□□□ -1.75
CHMP3Q9Y3E7 RNU6-969P-201ENST00000383900 105 ntBASIC4.14□□□□□ -1.75
CHMP3Q9Y3E7 MIR147B-201ENST00000390185 80 ntBASIC4.14□□□□□ -1.75
CHMP3Q9Y3E7 Y_RNA.629-201ENST00000411368 105 ntBASIC4.14□□□□□ -1.75
CHMP3Q9Y3E7 AC245291.1-201ENST00000419501 328 ntBASIC4.14□□□□□ -1.75
CHMP3Q9Y3E7 AC006028.1-201ENST00000438379 402 ntBASIC4.14□□□□□ -1.75
CHMP3Q9Y3E7 AC008267.6-201ENST00000441664 139 ntBASIC4.14□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 111.6 ms