Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 PROS1-203ENST00000407433 3335 ntTSL 1 (best) BASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 RNA5SP322-201ENST00000363617 119 ntBASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 RNU6-978P-201ENST00000364371 103 ntBASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 RNA5SP130-201ENST00000364431 114 ntBASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 SNORD58C-201ENST00000365223 64 ntBASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 AP002088.1-201ENST00000382740 395 ntBASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 SNORA20B-201ENST00000384220 132 ntBASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 MIR548A1-201ENST00000385041 97 ntBASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 MIR199A2-201ENST00000385289 110 ntBASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 MIR873-201ENST00000401120 77 ntBASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 RNU6-437P-201ENST00000459408 95 ntBASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 AC080013.2-201ENST00000460866 323 ntBASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 KRTAP13-6P-201ENST00000508999 371 ntBASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 RNU6-197P-201ENST00000516680 100 ntBASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 RNU6-63P-201ENST00000516690 95 ntBASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 RNA5SP179-201ENST00000517284 121 ntBASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 AC091167.4-201ENST00000605079 184 ntBASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC3.52□□□□□ -1.85
HIF3AQ9Y2N7 SLC30A6-204ENST00000406369 4589 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HIF3AQ9Y2N7 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC3.51□□□□□ -1.85
HIF3AQ9Y2N7 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
HIF3AQ9Y2N7 AL356292.1-201ENST00000283110 373 ntBASIC3.51□□□□□ -1.85
HIF3AQ9Y2N7 Y_RNA.432-201ENST00000384087 111 ntBASIC3.51□□□□□ -1.85
HIF3AQ9Y2N7 SNORD14D-201ENST00000384390 87 ntBASIC3.51□□□□□ -1.85
HIF3AQ9Y2N7 Y_RNA.495-201ENST00000384435 112 ntBASIC3.51□□□□□ -1.85
HIF3AQ9Y2N7 HMGN2P8-201ENST00000391458 268 ntBASIC3.51□□□□□ -1.85
HIF3AQ9Y2N7 AL139095.1-201ENST00000404326 391 ntBASIC3.51□□□□□ -1.85
HIF3AQ9Y2N7 AC068295.1-201ENST00000413056 153 ntTSL 3 BASIC3.51□□□□□ -1.85
HIF3AQ9Y2N7 AC097463.2-201ENST00000421074 142 ntBASIC3.51□□□□□ -1.85
HIF3AQ9Y2N7 YME1L1P1-201ENST00000429435 297 ntBASIC3.51□□□□□ -1.85
HIF3AQ9Y2N7 HMGN2P31-201ENST00000432430 273 ntBASIC3.51□□□□□ -1.85
HIF3AQ9Y2N7 AC006445.1-201ENST00000491925 405 ntBASIC3.51□□□□□ -1.85
HIF3AQ9Y2N7 RNU6-781P-201ENST00000516377 101 ntBASIC3.51□□□□□ -1.85
HIF3AQ9Y2N7 NDUFA5P6-201ENST00000542110 379 ntBASIC3.51□□□□□ -1.85
HIF3AQ9Y2N7 MIR3939-201ENST00000582614 106 ntBASIC3.51□□□□□ -1.85
HIF3AQ9Y2N7 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.51□□□□□ -1.85
HIF3AQ9Y2N7 MIR492-201ENST00000638676 116 ntBASIC3.51□□□□□ -1.85
HIF3AQ9Y2N7 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC3.51□□□□□ -1.85
HIF3AQ9Y2N7 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
HIF3AQ9Y2N7 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.51□□□□□ -1.85
HIF3AQ9Y2N7 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.51□□□□□ -1.85
HIF3AQ9Y2N7 SLITRK5-201ENST00000325089 21103 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
HIF3AQ9Y2N7 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.5□□□□□ -1.85
HIF3AQ9Y2N7 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HIF3AQ9Y2N7 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
HIF3AQ9Y2N7 SNORD114-7-201ENST00000362520 77 ntBASIC3.5□□□□□ -1.85
HIF3AQ9Y2N7 Y_RNA.120-201ENST00000363304 110 ntBASIC3.5□□□□□ -1.85
HIF3AQ9Y2N7 SNORD32B-201ENST00000364460 84 ntBASIC3.5□□□□□ -1.85
HIF3AQ9Y2N7 MIR1185-2-201ENST00000408687 86 ntBASIC3.5□□□□□ -1.85
HIF3AQ9Y2N7 SNORA11-201ENST00000408789 128 ntBASIC3.5□□□□□ -1.85
HIF3AQ9Y2N7 RNY4P30-201ENST00000410216 95 ntBASIC3.5□□□□□ -1.85
HIF3AQ9Y2N7 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.5□□□□□ -1.85
HIF3AQ9Y2N7 AL031183.1-201ENST00000457667 207 ntBASIC3.5□□□□□ -1.85
HIF3AQ9Y2N7 Y_RNA.651-201ENST00000459380 103 ntBASIC3.5□□□□□ -1.85
HIF3AQ9Y2N7 HMGN2P9-201ENST00000476875 229 ntBASIC3.5□□□□□ -1.85
HIF3AQ9Y2N7 Y_RNA.690-201ENST00000516603 95 ntBASIC3.5□□□□□ -1.85
HIF3AQ9Y2N7 RNA5SP143-201ENST00000516936 115 ntBASIC3.5□□□□□ -1.85
HIF3AQ9Y2N7 RNU6-711P-201ENST00000517255 106 ntBASIC3.5□□□□□ -1.85
HIF3AQ9Y2N7 AC008056.1-201ENST00000553322 394 ntTSL 3 BASIC3.5□□□□□ -1.85
HIF3AQ9Y2N7 AC008739.2-201ENST00000597006 317 ntBASIC3.5□□□□□ -1.85
HIF3AQ9Y2N7 uc_338.28-201ENST00000612082 187 ntBASIC3.5□□□□□ -1.85
HIF3AQ9Y2N7 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC3.5□□□□□ -1.85
HIF3AQ9Y2N7 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.5□□□□□ -1.85
HIF3AQ9Y2N7 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
HIF3AQ9Y2N7 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.5□□□□□ -1.85
HIF3AQ9Y2N7 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 AL021368.2-201ENST00000606125 5352 ntBASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 RNA5SP479-201ENST00000364858 117 ntBASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 SNORA51.4-201ENST00000364993 124 ntBASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 RNU6-484P-201ENST00000384016 107 ntBASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 MIR591-201ENST00000385290 95 ntBASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 MIR1193-201ENST00000408109 78 ntBASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 AL135786.1-201ENST00000415892 214 ntBASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 AL356095.1-201ENST00000417217 199 ntBASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 EIF4EP4-201ENST00000424916 578 ntBASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 AC010618.1-201ENST00000469924 477 ntBASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 SNORA31.9-201ENST00000516429 84 ntBASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 RNU5F-4P-201ENST00000516581 114 ntBASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 RNU6-537P-201ENST00000517277 103 ntBASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 MIR6716-201ENST00000613413 80 ntBASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 AC068724.3-201ENST00000625906 87 ntBASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 UGP2-230ENST00000626380 276 ntTSL 5 BASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 U6.98-201ENST00000637157 84 ntBASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 SLITRK4-203ENST00000596188 8545 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HIF3AQ9Y2N7 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms