Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC4□□□□□ -1.77
CCDC87Q9NVE4 MIR767-201ENST00000390228 109 ntBASIC4□□□□□ -1.77
CCDC87Q9NVE4 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC4□□□□□ -1.77
CCDC87Q9NVE4 EEF1A1P41-201ENST00000414667 207 ntBASIC4□□□□□ -1.77
CCDC87Q9NVE4 KRTAP19-11P-201ENST00000439851 104 ntBASIC4□□□□□ -1.77
CCDC87Q9NVE4 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC4□□□□□ -1.77
CCDC87Q9NVE4 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC4□□□□□ -1.77
CCDC87Q9NVE4 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC4□□□□□ -1.77
CCDC87Q9NVE4 RNU6-1231P-201ENST00000517185 103 ntBASIC4□□□□□ -1.77
CCDC87Q9NVE4 AP002001.1-203ENST00000534002 267 ntBASIC4□□□□□ -1.77
CCDC87Q9NVE4 ELOCP29-201ENST00000588193 334 ntBASIC4□□□□□ -1.77
CCDC87Q9NVE4 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC4□□□□□ -1.77
CCDC87Q9NVE4 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC4□□□□□ -1.77
CCDC87Q9NVE4 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
CCDC87Q9NVE4 AL136360.1-201ENST00000503377 1900 ntBASIC3.99□□□□□ -1.77
CCDC87Q9NVE4 RNU1-75P-201ENST00000347264 129 ntBASIC3.99□□□□□ -1.77
CCDC87Q9NVE4 SNORD6-201ENST00000365444 73 ntBASIC3.99□□□□□ -1.77
CCDC87Q9NVE4 RNU6-211P-201ENST00000384047 107 ntBASIC3.99□□□□□ -1.77
CCDC87Q9NVE4 SNORD15B-201ENST00000384714 146 ntBASIC3.99□□□□□ -1.77
CCDC87Q9NVE4 AL159169.1-201ENST00000421119 127 ntBASIC3.99□□□□□ -1.77
CCDC87Q9NVE4 TOMM22P2-201ENST00000430735 237 ntBASIC3.99□□□□□ -1.77
CCDC87Q9NVE4 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.99□□□□□ -1.77
CCDC87Q9NVE4 RPS29P26-201ENST00000477483 171 ntBASIC3.99□□□□□ -1.77
CCDC87Q9NVE4 AC140059.1-201ENST00000489238 361 ntBASIC3.99□□□□□ -1.77
CCDC87Q9NVE4 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC87Q9NVE4 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.99□□□□□ -1.77
CCDC87Q9NVE4 RNU2-44P-201ENST00000516795 194 ntBASIC3.99□□□□□ -1.77
CCDC87Q9NVE4 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC87Q9NVE4 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.99□□□□□ -1.77
CCDC87Q9NVE4 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.99□□□□□ -1.77
CCDC87Q9NVE4 DEFB117-201ENST00000602356 141 ntBASIC3.99□□□□□ -1.77
CCDC87Q9NVE4 snoU18.1-201ENST00000629629 71 ntBASIC3.99□□□□□ -1.77
CCDC87Q9NVE4 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.99□□□□□ -1.77
CCDC87Q9NVE4 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC87Q9NVE4 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC87Q9NVE4 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
CCDC87Q9NVE4 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.99□□□□□ -1.77
CCDC87Q9NVE4 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC3.99□□□□□ -1.77
CCDC87Q9NVE4 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC87Q9NVE4 SYT14-208ENST00000637265 13567 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC87Q9NVE4 RNU6-1272P-201ENST00000362776 107 ntBASIC3.98□□□□□ -1.77
CCDC87Q9NVE4 U3.40-201ENST00000408706 208 ntBASIC3.98□□□□□ -1.77
CCDC87Q9NVE4 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC87Q9NVE4 AC097463.2-201ENST00000421074 142 ntBASIC3.98□□□□□ -1.77
CCDC87Q9NVE4 AC022018.1-201ENST00000430685 241 ntBASIC3.98□□□□□ -1.77
CCDC87Q9NVE4 AL139132.1-201ENST00000431587 344 ntBASIC3.98□□□□□ -1.77
CCDC87Q9NVE4 RPL31P41-201ENST00000477967 372 ntBASIC3.98□□□□□ -1.77
CCDC87Q9NVE4 MIR2276-201ENST00000516886 89 ntBASIC3.98□□□□□ -1.77
CCDC87Q9NVE4 RNU6-711P-201ENST00000517255 106 ntBASIC3.98□□□□□ -1.77
CCDC87Q9NVE4 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC87Q9NVE4 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC3.98□□□□□ -1.77
CCDC87Q9NVE4 AC009127.3-201ENST00000570531 403 ntBASIC3.98□□□□□ -1.77
CCDC87Q9NVE4 MIR3145-201ENST00000580727 82 ntBASIC3.98□□□□□ -1.77
CCDC87Q9NVE4 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
CCDC87Q9NVE4 AL365265.1-201ENST00000621045 234 ntBASIC3.98□□□□□ -1.77
CCDC87Q9NVE4 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.98□□□□□ -1.77
CCDC87Q9NVE4 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.98□□□□□ -1.77
CCDC87Q9NVE4 AL359854.1-201ENST00000614203 1594 ntBASIC3.97□□□□□ -1.77
CCDC87Q9NVE4 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC87Q9NVE4 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC87Q9NVE4 AP001486.2-201ENST00000561652 5113 ntBASIC3.97□□□□□ -1.77
CCDC87Q9NVE4 RNU6-774P-201ENST00000363238 107 ntBASIC3.97□□□□□ -1.77
CCDC87Q9NVE4 Y_RNA.308-201ENST00000365043 101 ntBASIC3.97□□□□□ -1.77
CCDC87Q9NVE4 SNORA18.2-201ENST00000383865 132 ntBASIC3.97□□□□□ -1.77
CCDC87Q9NVE4 RNA5SP354-201ENST00000391247 136 ntBASIC3.97□□□□□ -1.77
CCDC87Q9NVE4 CST9LP2-201ENST00000437612 320 ntBASIC3.97□□□□□ -1.77
CCDC87Q9NVE4 RNU6-1278P-201ENST00000516130 107 ntBASIC3.97□□□□□ -1.77
CCDC87Q9NVE4 RNU6-436P-201ENST00000516171 114 ntBASIC3.97□□□□□ -1.77
CCDC87Q9NVE4 AC022559.1-201ENST00000520905 205 ntBASIC3.97□□□□□ -1.77
CCDC87Q9NVE4 MIR3133-201ENST00000583157 78 ntBASIC3.97□□□□□ -1.77
CCDC87Q9NVE4 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.97□□□□□ -1.77
CCDC87Q9NVE4 GABRG2-229ENST00000641017 3628 ntBASIC3.97□□□□□ -1.77
CCDC87Q9NVE4 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
CCDC87Q9NVE4 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
CCDC87Q9NVE4 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
CCDC87Q9NVE4 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC87Q9NVE4 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.96□□□□□ -1.78
CCDC87Q9NVE4 U3.8-201ENST00000363675 217 ntBASIC3.96□□□□□ -1.78
CCDC87Q9NVE4 RNU6-923P-201ENST00000364753 107 ntBASIC3.96□□□□□ -1.78
CCDC87Q9NVE4 Y_RNA.329-201ENST00000365209 107 ntBASIC3.96□□□□□ -1.78
CCDC87Q9NVE4 SNORD67-201ENST00000390833 111 ntBASIC3.96□□□□□ -1.78
CCDC87Q9NVE4 AC002075.2-201ENST00000425207 252 ntBASIC3.96□□□□□ -1.78
CCDC87Q9NVE4 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.96□□□□□ -1.78
CCDC87Q9NVE4 RPL23AP62-201ENST00000463396 453 ntBASIC3.96□□□□□ -1.78
CCDC87Q9NVE4 RNA5SP367-201ENST00000516557 118 ntBASIC3.96□□□□□ -1.78
CCDC87Q9NVE4 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC87Q9NVE4 AL670379.2-201ENST00000604983 252 ntBASIC3.96□□□□□ -1.78
CCDC87Q9NVE4 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC87Q9NVE4 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.96□□□□□ -1.78
CCDC87Q9NVE4 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.96□□□□□ -1.78
CCDC87Q9NVE4 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC3.96□□□□□ -1.78
CCDC87Q9NVE4 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC87Q9NVE4 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.95□□□□□ -1.78
CCDC87Q9NVE4 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
CCDC87Q9NVE4 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.95□□□□□ -1.78
CCDC87Q9NVE4 RNU6-324P-201ENST00000363957 106 ntBASIC3.95□□□□□ -1.78
CCDC87Q9NVE4 RNU6-454P-201ENST00000364292 107 ntBASIC3.95□□□□□ -1.78
CCDC87Q9NVE4 Y_RNA.506-201ENST00000384494 102 ntBASIC3.95□□□□□ -1.78
CCDC87Q9NVE4 RNU6-710P-201ENST00000410424 105 ntBASIC3.95□□□□□ -1.78
CCDC87Q9NVE4 AC004866.1-201ENST00000411748 78 ntBASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms