Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
TRIM56Q9BRZ2 RNU6-486P-201ENST00000363116 107 ntBASIC3.69□□□□□ -1.82
TRIM56Q9BRZ2 SNORD46.1-201ENST00000364139 104 ntBASIC3.69□□□□□ -1.82
TRIM56Q9BRZ2 RNA5SP42-201ENST00000364278 115 ntBASIC3.69□□□□□ -1.82
TRIM56Q9BRZ2 snoU2_19.4-201ENST00000364329 80 ntBASIC3.69□□□□□ -1.82
TRIM56Q9BRZ2 Y_RNA.333-201ENST00000365274 102 ntBASIC3.69□□□□□ -1.82
TRIM56Q9BRZ2 RNU4-11P-201ENST00000365287 132 ntBASIC3.69□□□□□ -1.82
TRIM56Q9BRZ2 MIR200C-201ENST00000384980 68 ntBASIC3.69□□□□□ -1.82
TRIM56Q9BRZ2 MIR616-201ENST00000385293 97 ntBASIC3.69□□□□□ -1.82
TRIM56Q9BRZ2 MIR526A2-201ENST00000390198 65 ntBASIC3.69□□□□□ -1.82
TRIM56Q9BRZ2 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC3.69□□□□□ -1.82
TRIM56Q9BRZ2 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.69□□□□□ -1.82
TRIM56Q9BRZ2 SCARNA11.3-201ENST00000517276 130 ntBASIC3.69□□□□□ -1.82
TRIM56Q9BRZ2 AC022616.8-201ENST00000533569 253 ntBASIC3.69□□□□□ -1.82
TRIM56Q9BRZ2 AC103810.1-201ENST00000579873 453 ntBASIC3.69□□□□□ -1.82
TRIM56Q9BRZ2 MIR4765-201ENST00000585007 77 ntBASIC3.69□□□□□ -1.82
TRIM56Q9BRZ2 AC008739.2-201ENST00000597006 317 ntBASIC3.69□□□□□ -1.82
TRIM56Q9BRZ2 AL391903.3-201ENST00000612158 163 ntBASIC3.69□□□□□ -1.82
TRIM56Q9BRZ2 PWAR6-201ENST00000552334 4618 ntBASIC3.69□□□□□ -1.82
TRIM56Q9BRZ2 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
TRIM56Q9BRZ2 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
TRIM56Q9BRZ2 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.68□□□□□ -1.82
TRIM56Q9BRZ2 AC091564.4-201ENST00000533934 2194 ntBASIC3.68□□□□□ -1.82
TRIM56Q9BRZ2 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
TRIM56Q9BRZ2 RNU6-199P-201ENST00000362954 107 ntBASIC3.68□□□□□ -1.82
TRIM56Q9BRZ2 RNU6-1205P-201ENST00000363625 106 ntBASIC3.68□□□□□ -1.82
TRIM56Q9BRZ2 Y_RNA.337-201ENST00000365312 102 ntBASIC3.68□□□□□ -1.82
TRIM56Q9BRZ2 Y_RNA.361-201ENST00000365515 120 ntBASIC3.68□□□□□ -1.82
TRIM56Q9BRZ2 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.68□□□□□ -1.82
TRIM56Q9BRZ2 PVALB-202ENST00000404171 422 ntTSL 2 BASIC3.68□□□□□ -1.82
TRIM56Q9BRZ2 SNORA3.3-201ENST00000408712 125 ntBASIC3.68□□□□□ -1.82
TRIM56Q9BRZ2 SNORA57.3-201ENST00000411095 141 ntBASIC3.68□□□□□ -1.82
TRIM56Q9BRZ2 AC093663.1-201ENST00000497190 394 ntBASIC3.68□□□□□ -1.82
TRIM56Q9BRZ2 SNORA70.14-201ENST00000516205 110 ntBASIC3.68□□□□□ -1.82
TRIM56Q9BRZ2 HSPE1P18-201ENST00000517602 280 ntBASIC3.68□□□□□ -1.82
TRIM56Q9BRZ2 AC109810.1-201ENST00000534066 224 ntBASIC3.68□□□□□ -1.82
TRIM56Q9BRZ2 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.68□□□□□ -1.82
TRIM56Q9BRZ2 SNORA51-201ENST00000606420 132 ntBASIC3.68□□□□□ -1.82
TRIM56Q9BRZ2 U6.115-201ENST00000636045 103 ntBASIC3.68□□□□□ -1.82
TRIM56Q9BRZ2 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
TRIM56Q9BRZ2 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 MAPK10-322ENST00000641485 4530 ntBASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 RNA5SP124-201ENST00000362739 110 ntBASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 RNU4-10P-201ENST00000364383 140 ntBASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 U8.11-201ENST00000384699 133 ntBASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 U8.18-201ENST00000459285 133 ntBASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 SNORA25.12-201ENST00000516202 82 ntBASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 RNU6-1007P-201ENST00000516586 107 ntBASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 CYCSP30-201ENST00000546447 172 ntBASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 MIR4425-201ENST00000580572 84 ntBASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 MIR3944-201ENST00000581277 108 ntBASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
TRIM56Q9BRZ2 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.66□□□□□ -1.82
TRIM56Q9BRZ2 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
TRIM56Q9BRZ2 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.66□□□□□ -1.82
TRIM56Q9BRZ2 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
TRIM56Q9BRZ2 TLR10-206ENST00000508334 2616 ntAPPRIS P1 TSL 1 (best) BASIC3.66□□□□□ -1.82
TRIM56Q9BRZ2 Y_RNA.24-201ENST00000362508 103 ntBASIC3.66□□□□□ -1.82
TRIM56Q9BRZ2 RNU6-1048P-201ENST00000364054 107 ntBASIC3.66□□□□□ -1.82
TRIM56Q9BRZ2 RNU6-818P-201ENST00000364837 108 ntBASIC3.66□□□□□ -1.82
TRIM56Q9BRZ2 Y_RNA.310-201ENST00000365063 113 ntBASIC3.66□□□□□ -1.82
TRIM56Q9BRZ2 AP002088.1-201ENST00000382740 395 ntBASIC3.66□□□□□ -1.82
TRIM56Q9BRZ2 RNU6-144P-201ENST00000383951 107 ntBASIC3.66□□□□□ -1.82
TRIM56Q9BRZ2 SNORA67.2-201ENST00000384300 149 ntBASIC3.66□□□□□ -1.82
TRIM56Q9BRZ2 YME1L1P1-201ENST00000429435 297 ntBASIC3.66□□□□□ -1.82
TRIM56Q9BRZ2 Z98742.2-201ENST00000431564 187 ntBASIC3.66□□□□□ -1.82
TRIM56Q9BRZ2 AL133162.1-201ENST00000463228 453 ntBASIC3.66□□□□□ -1.82
TRIM56Q9BRZ2 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
TRIM56Q9BRZ2 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.66□□□□□ -1.82
TRIM56Q9BRZ2 AL121772.2-201ENST00000614331 297 ntBASIC3.66□□□□□ -1.82
TRIM56Q9BRZ2 AP000553.6-201ENST00000641242 118 ntBASIC3.66□□□□□ -1.82
TRIM56Q9BRZ2 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.66□□□□□ -1.82
TRIM56Q9BRZ2 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.66□□□□□ -1.82
TRIM56Q9BRZ2 AC091152.2-201ENST00000591628 2569 ntBASIC3.65□□□□□ -1.82
TRIM56Q9BRZ2 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.65□□□□□ -1.82
TRIM56Q9BRZ2 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.65□□□□□ -1.82
TRIM56Q9BRZ2 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.65□□□□□ -1.82
TRIM56Q9BRZ2 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.82
TRIM56Q9BRZ2 snoU2_19.1-201ENST00000362361 80 ntBASIC3.65□□□□□ -1.83
TRIM56Q9BRZ2 SNORD32B-201ENST00000364460 84 ntBASIC3.65□□□□□ -1.83
TRIM56Q9BRZ2 RNU6-969P-201ENST00000383900 105 ntBASIC3.65□□□□□ -1.83
TRIM56Q9BRZ2 MIR586-201ENST00000385035 97 ntBASIC3.65□□□□□ -1.83
TRIM56Q9BRZ2 DBIP2-201ENST00000419076 262 ntBASIC3.65□□□□□ -1.83
TRIM56Q9BRZ2 AL137159.1-201ENST00000452808 512 ntBASIC3.65□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 893.1 ms