Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 RPS23P5-201ENST00000495419 428 ntBASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 AC097473.1-201ENST00000508142 408 ntBASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 RNA5SP458-201ENST00000516188 119 ntBASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 RNU6-58P-201ENST00000517143 103 ntBASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 AC134698.4-201ENST00000523451 826 ntBASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 CBX3P8-201ENST00000532412 525 ntBASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 AC090517.1-201ENST00000569307 266 ntBASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 AC016727.2-201ENST00000603988 621 ntBASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 AC022202.1-201ENST00000613515 211 ntBASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 AL669831.3-213ENST00000636676 183 ntBASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
CCDC3Q9BQI4 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC3Q9BQI4 AC009487.4-201ENST00000624969 3585 ntBASIC1.95□□□□□ -2.1
CCDC3Q9BQI4 Y_RNA.2-201ENST00000362330 96 ntBASIC1.95□□□□□ -2.1
CCDC3Q9BQI4 Y_RNA.384-201ENST00000383909 102 ntBASIC1.95□□□□□ -2.1
CCDC3Q9BQI4 Y_RNA.404-201ENST00000383978 102 ntBASIC1.95□□□□□ -2.1
CCDC3Q9BQI4 RNU6-1297P-201ENST00000384415 104 ntBASIC1.95□□□□□ -2.1
CCDC3Q9BQI4 MIR32-201ENST00000384965 70 ntBASIC1.95□□□□□ -2.1
CCDC3Q9BQI4 MT-TD-201ENST00000387419 68 ntBASIC1.95□□□□□ -2.1
CCDC3Q9BQI4 MIR300-201ENST00000401138 83 ntBASIC1.95□□□□□ -2.1
CCDC3Q9BQI4 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.95□□□□□ -2.1
CCDC3Q9BQI4 AC009237.7-201ENST00000447357 229 ntBASIC1.95□□□□□ -2.1
CCDC3Q9BQI4 AC016925.1-201ENST00000458303 298 ntBASIC1.95□□□□□ -2.1
CCDC3Q9BQI4 RNU6-344P-201ENST00000516635 111 ntBASIC1.95□□□□□ -2.1
CCDC3Q9BQI4 RNU6-965P-201ENST00000516721 96 ntBASIC1.95□□□□□ -2.1
CCDC3Q9BQI4 RNU6-1098P-201ENST00000516772 96 ntBASIC1.95□□□□□ -2.1
CCDC3Q9BQI4 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.95□□□□□ -2.1
CCDC3Q9BQI4 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.95□□□□□ -2.1
CCDC3Q9BQI4 AC027288.2-201ENST00000553028 243 ntBASIC1.95□□□□□ -2.1
CCDC3Q9BQI4 AC100812.1-201ENST00000607622 580 ntBASIC1.95□□□□□ -2.1
CCDC3Q9BQI4 AC131280.1-202ENST00000624067 4211 ntBASIC1.95□□□□□ -2.1
CCDC3Q9BQI4 ZNF720P1-201ENST00000562403 1939 ntBASIC1.95□□□□□ -2.1
CCDC3Q9BQI4 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 SNORD14D-201ENST00000384390 87 ntBASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 RNU6-159P-201ENST00000391080 106 ntBASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 RNU1-139P-201ENST00000391307 165 ntBASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 SNORA75.6-201ENST00000391318 127 ntBASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 MIR1262-201ENST00000408276 93 ntBASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 RNU6-370P-201ENST00000411008 104 ntBASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 AC123900.1-201ENST00000420390 96 ntBASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 MTCYBP10-201ENST00000424905 650 ntBASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 AC027124.2-201ENST00000428249 105 ntBASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 ELOCP24-201ENST00000456370 334 ntBASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 RNU1-131P-201ENST00000458943 161 ntBASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 MTND4P17-201ENST00000470444 350 ntBASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 RPL7P42-201ENST00000481005 679 ntBASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 RNU4ATAC7P-201ENST00000516280 125 ntBASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 RNU5F-4P-201ENST00000516581 114 ntBASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 RNA5SP384-201ENST00000516615 116 ntBASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 RNU2-44P-201ENST00000516795 194 ntBASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 RNU2-19P-201ENST00000517288 84 ntBASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 DEFB131C-201ENST00000528817 165 ntBASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 APOOP3-201ENST00000536787 586 ntBASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 SUB1P3-201ENST00000564581 315 ntBASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 AC002984.1-201ENST00000591692 448 ntBASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 AL031274.2-201ENST00000599419 203 ntBASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.94□□□□□ -2.1
CCDC3Q9BQI4 AL359851.1-201ENST00000569460 4997 ntBASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 RNU1-62P-201ENST00000362599 164 ntBASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 RNY1P16-201ENST00000363063 111 ntBASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 Y_RNA.319-201ENST00000365138 92 ntBASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 SNORA18.2-201ENST00000383865 132 ntBASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 RNU6-700P-201ENST00000391043 107 ntBASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 SNORA40.18-201ENST00000391200 128 ntBASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 CYCSP49-201ENST00000420810 319 ntBASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 AL445685.2-201ENST00000422551 342 ntBASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 RNU7-152P-201ENST00000458982 64 ntBASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 AC025033.1-201ENST00000463883 194 ntBASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 TOMM22P6-201ENST00000465035 409 ntBASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 RPL17P19-201ENST00000489069 552 ntBASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 RNA5SP182-201ENST00000516064 82 ntBASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 RNU6-559P-201ENST00000516151 98 ntBASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 RNU1-40P-201ENST00000516816 164 ntBASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 RNU1-97P-201ENST00000516872 164 ntBASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 RNA5SP490-201ENST00000517141 136 ntBASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 AC110588.1-201ENST00000559699 137 ntBASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 AC078899.2-201ENST00000595282 212 ntBASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms