Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC087588.2-201ENST00000617667 426 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 MIR6873-201ENST00000622788 63 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 AP000553.5-201ENST00000641933 54 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 BX322639.1-202ENST00000423987 2213 ntBASIC1.92□□□□□ -2.1
NKX3-1Q99801 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
NKX3-1Q99801 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
NKX3-1Q99801 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC1.92□□□□□ -2.1
NKX3-1Q99801 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
NKX3-1Q99801 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC1.91□□□□□ -2.1
NKX3-1Q99801 AL596028.1-201ENST00000326971 197 ntBASIC1.91□□□□□ -2.1
NKX3-1Q99801 Y_RNA.5-201ENST00000362334 102 ntBASIC1.91□□□□□ -2.1
NKX3-1Q99801 Y_RNA.146-201ENST00000363549 102 ntBASIC1.91□□□□□ -2.1
NKX3-1Q99801 RNU6-873P-201ENST00000363833 107 ntBASIC1.91□□□□□ -2.1
NKX3-1Q99801 Y_RNA.813-201ENST00000364639 102 ntBASIC1.91□□□□□ -2.1
NKX3-1Q99801 RNA5SP160-201ENST00000364866 120 ntBASIC1.91□□□□□ -2.1
NKX3-1Q99801 Y_RNA.463-201ENST00000384271 102 ntBASIC1.91□□□□□ -2.1
NKX3-1Q99801 RNU6-541P-201ENST00000384709 110 ntBASIC1.91□□□□□ -2.1
NKX3-1Q99801 MIR221-201ENST00000385135 110 ntBASIC1.91□□□□□ -2.1
NKX3-1Q99801 EDDM3CP-201ENST00000415977 425 ntBASIC1.91□□□□□ -2.1
NKX3-1Q99801 MTCYBP10-201ENST00000424905 650 ntBASIC1.91□□□□□ -2.1
NKX3-1Q99801 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.91□□□□□ -2.1
NKX3-1Q99801 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.91□□□□□ -2.1
NKX3-1Q99801 RPL23AP7-203ENST00000449021 469 ntBASIC1.91□□□□□ -2.1
NKX3-1Q99801 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC1.91□□□□□ -2.1
NKX3-1Q99801 RPS23P5-201ENST00000495419 428 ntBASIC1.91□□□□□ -2.1
NKX3-1Q99801 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.91□□□□□ -2.1
NKX3-1Q99801 RNA5SP281-201ENST00000516504 135 ntBASIC1.91□□□□□ -2.1
NKX3-1Q99801 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC1.91□□□□□ -2.1
NKX3-1Q99801 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.91□□□□□ -2.1
NKX3-1Q99801 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.91□□□□□ -2.1
NKX3-1Q99801 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.91□□□□□ -2.1
NKX3-1Q99801 TCL6_2.1-201ENST00000615162 119 ntBASIC1.91□□□□□ -2.1
NKX3-1Q99801 Clostridiales-1.3-201ENST00000637703 147 ntBASIC1.91□□□□□ -2.1
NKX3-1Q99801 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC1.91□□□□□ -2.1
NKX3-1Q99801 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.91□□□□□ -2.1
NKX3-1Q99801 MTND5P10-201ENST00000603719 1809 ntBASIC1.91□□□□□ -2.1
NKX3-1Q99801 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.9□□□□□ -2.1
NKX3-1Q99801 MIR369-201ENST00000362155 70 ntBASIC1.9□□□□□ -2.11
NKX3-1Q99801 RNU4-52P-201ENST00000384209 138 ntBASIC1.9□□□□□ -2.11
NKX3-1Q99801 Y_RNA.496-201ENST00000384444 101 ntBASIC1.9□□□□□ -2.11
NKX3-1Q99801 Y_RNA.577-201ENST00000384794 101 ntBASIC1.9□□□□□ -2.11
NKX3-1Q99801 AL355497.1-201ENST00000406262 551 ntBASIC1.9□□□□□ -2.11
NKX3-1Q99801 HMGN2P38-201ENST00000423806 265 ntBASIC1.9□□□□□ -2.11
NKX3-1Q99801 AC096644.2-201ENST00000429278 159 ntBASIC1.9□□□□□ -2.11
NKX3-1Q99801 CHEK2P4-201ENST00000450340 246 ntBASIC1.9□□□□□ -2.11
NKX3-1Q99801 SNORA25.14-201ENST00000516481 132 ntBASIC1.9□□□□□ -2.11
NKX3-1Q99801 RNA5SP490-201ENST00000517141 136 ntBASIC1.9□□□□□ -2.11
NKX3-1Q99801 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.9□□□□□ -2.11
NKX3-1Q99801 MIR5695-201ENST00000579717 85 ntBASIC1.9□□□□□ -2.11
NKX3-1Q99801 AC012640.5-201ENST00000623897 319 ntBASIC1.9□□□□□ -2.11
NKX3-1Q99801 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.9□□□□□ -2.11
NKX3-1Q99801 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.9□□□□□ -2.11
NKX3-1Q99801 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
NKX3-1Q99801 ZNF72P-201ENST00000425869 1908 ntBASIC1.89□□□□□ -2.11
NKX3-1Q99801 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
NKX3-1Q99801 MIR340-201ENST00000362125 95 ntBASIC1.89□□□□□ -2.11
NKX3-1Q99801 RNU6-1115P-201ENST00000362490 106 ntBASIC1.89□□□□□ -2.11
NKX3-1Q99801 RNU6-490P-201ENST00000362985 107 ntBASIC1.89□□□□□ -2.11
NKX3-1Q99801 SNORD115-3-201ENST00000363100 82 ntBASIC1.89□□□□□ -2.11
NKX3-1Q99801 RNU6-727P-201ENST00000363592 107 ntBASIC1.89□□□□□ -2.11
NKX3-1Q99801 Y_RNA.364-201ENST00000365532 101 ntBASIC1.89□□□□□ -2.11
NKX3-1Q99801 SNORA70B-201ENST00000384210 135 ntBASIC1.89□□□□□ -2.11
NKX3-1Q99801 RNU6-281P-201ENST00000384212 103 ntBASIC1.89□□□□□ -2.11
NKX3-1Q99801 SNORD23.1-201ENST00000408212 104 ntBASIC1.89□□□□□ -2.11
NKX3-1Q99801 Z98742.3-201ENST00000418637 326 ntBASIC1.89□□□□□ -2.11
NKX3-1Q99801 USP9YP16-201ENST00000430287 407 ntBASIC1.89□□□□□ -2.11
NKX3-1Q99801 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC1.89□□□□□ -2.11
NKX3-1Q99801 USP9YP23-201ENST00000455085 407 ntBASIC1.89□□□□□ -2.11
NKX3-1Q99801 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC1.89□□□□□ -2.11
NKX3-1Q99801 RNU6-717P-201ENST00000459076 104 ntBASIC1.89□□□□□ -2.11
NKX3-1Q99801 RNU7-169P-201ENST00000459456 61 ntBASIC1.89□□□□□ -2.11
NKX3-1Q99801 AC132942.1-201ENST00000486753 483 ntBASIC1.89□□□□□ -2.11
NKX3-1Q99801 AC090255.1-201ENST00000495779 349 ntBASIC1.89□□□□□ -2.11
NKX3-1Q99801 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.89□□□□□ -2.11
NKX3-1Q99801 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.89□□□□□ -2.11
NKX3-1Q99801 MIR3126-201ENST00000577443 74 ntBASIC1.89□□□□□ -2.11
NKX3-1Q99801 MIR5007-201ENST00000583098 95 ntBASIC1.89□□□□□ -2.11
NKX3-1Q99801 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC1.89□□□□□ -2.11
NKX3-1Q99801 AC133104.2-201ENST00000615272 193 ntBASIC1.89□□□□□ -2.11
NKX3-1Q99801 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC1.89□□□□□ -2.11
NKX3-1Q99801 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.88□□□□□ -2.11
NKX3-1Q99801 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.88□□□□□ -2.11
NKX3-1Q99801 SNORA67.4-201ENST00000384688 142 ntBASIC1.88□□□□□ -2.11
NKX3-1Q99801 RNU6-308P-201ENST00000390957 107 ntBASIC1.88□□□□□ -2.11
NKX3-1Q99801 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.88□□□□□ -2.11
NKX3-1Q99801 RNA5SP504-201ENST00000410676 117 ntBASIC1.88□□□□□ -2.11
NKX3-1Q99801 AL135786.1-201ENST00000415892 214 ntBASIC1.88□□□□□ -2.11
NKX3-1Q99801 AC007098.1-201ENST00000420122 367 ntBASIC1.88□□□□□ -2.11
NKX3-1Q99801 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.88□□□□□ -2.11
NKX3-1Q99801 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.88□□□□□ -2.11
NKX3-1Q99801 EIF1P2-201ENST00000428233 350 ntBASIC1.88□□□□□ -2.11
NKX3-1Q99801 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.88□□□□□ -2.11
NKX3-1Q99801 AL137159.1-201ENST00000452808 512 ntBASIC1.88□□□□□ -2.11
NKX3-1Q99801 APOA2-205ENST00000468465 421 ntTSL 2 BASIC1.88□□□□□ -2.11
NKX3-1Q99801 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.88□□□□□ -2.11
NKX3-1Q99801 RNU7-193P-201ENST00000516723 65 ntBASIC1.88□□□□□ -2.11
NKX3-1Q99801 RNA5SP54-201ENST00000516951 92 ntBASIC1.88□□□□□ -2.11
NKX3-1Q99801 RRN3P3-201ENST00000549207 578 ntBASIC1.88□□□□□ -2.11
NKX3-1Q99801 AC026470.2-201ENST00000561492 181 ntBASIC1.88□□□□□ -2.11
NKX3-1Q99801 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms