Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 Y_RNA.801-201ENST00000619005 101 ntBASIC2.9□□□□□ -1.95
NUP88Q99567 CTSLP2-204ENST00000629029 392 ntBASIC2.9□□□□□ -1.95
NUP88Q99567 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
NUP88Q99567 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
NUP88Q99567 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.9□□□□□ -1.95
NUP88Q99567 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
NUP88Q99567 Y_RNA.179-201ENST00000363844 90 ntBASIC2.89□□□□□ -1.95
NUP88Q99567 RNU1-91P-201ENST00000364746 163 ntBASIC2.89□□□□□ -1.95
NUP88Q99567 RNU6-234P-201ENST00000365229 104 ntBASIC2.89□□□□□ -1.95
NUP88Q99567 RNU6-639P-201ENST00000384074 107 ntBASIC2.89□□□□□ -1.95
NUP88Q99567 MRPL42P3-201ENST00000401492 326 ntBASIC2.89□□□□□ -1.95
NUP88Q99567 SNORA3.2-201ENST00000408221 125 ntBASIC2.89□□□□□ -1.95
NUP88Q99567 MIR1261-201ENST00000408659 82 ntBASIC2.89□□□□□ -1.95
NUP88Q99567 RNU6-1001P-201ENST00000411265 100 ntBASIC2.89□□□□□ -1.95
NUP88Q99567 EIF1P2-201ENST00000428233 350 ntBASIC2.89□□□□□ -1.95
NUP88Q99567 RNU6-1098P-201ENST00000516772 96 ntBASIC2.89□□□□□ -1.95
NUP88Q99567 AC018630.3-201ENST00000542637 96 ntBASIC2.89□□□□□ -1.95
NUP88Q99567 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.89□□□□□ -1.95
NUP88Q99567 SNORD58B-201ENST00000607313 66 ntBASIC2.89□□□□□ -1.95
NUP88Q99567 AC010999.1-201ENST00000611856 324 ntBASIC2.89□□□□□ -1.95
NUP88Q99567 AC138305.3-201ENST00000624988 240 ntBASIC2.89□□□□□ -1.95
NUP88Q99567 MPP6-209ENST00000625307 126 ntTSL 5 BASIC2.89□□□□□ -1.95
NUP88Q99567 AC091812.1-201ENST00000432235 1948 ntBASIC2.89□□□□□ -1.95
NUP88Q99567 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.89□□□□□ -1.95
NUP88Q99567 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.89□□□□□ -1.95
NUP88Q99567 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
NUP88Q99567 SNORA33.2-201ENST00000365413 134 ntBASIC2.88□□□□□ -1.95
NUP88Q99567 DEFA7P-201ENST00000382676 285 ntBASIC2.88□□□□□ -1.95
NUP88Q99567 RNU6-793P-201ENST00000384233 104 ntBASIC2.88□□□□□ -1.95
NUP88Q99567 SNORA51.11-201ENST00000384442 131 ntBASIC2.88□□□□□ -1.95
NUP88Q99567 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
NUP88Q99567 AL033519.2-201ENST00000403958 392 ntBASIC2.88□□□□□ -1.95
NUP88Q99567 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.88□□□□□ -1.95
NUP88Q99567 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.88□□□□□ -1.95
NUP88Q99567 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.88□□□□□ -1.95
NUP88Q99567 RNU6-667P-201ENST00000517186 102 ntBASIC2.88□□□□□ -1.95
NUP88Q99567 DEFB131C-201ENST00000528817 165 ntBASIC2.88□□□□□ -1.95
NUP88Q99567 MIR5188-201ENST00000583467 113 ntBASIC2.88□□□□□ -1.95
NUP88Q99567 AC006504.6-201ENST00000590142 199 ntBASIC2.88□□□□□ -1.95
NUP88Q99567 AC064859.1-201ENST00000624741 174 ntBASIC2.88□□□□□ -1.95
NUP88Q99567 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
NUP88Q99567 AP006437.1-201ENST00000641440 3685 ntBASIC2.87□□□□□ -1.95
NUP88Q99567 RNA5SP361-201ENST00000362686 118 ntBASIC2.87□□□□□ -1.95
NUP88Q99567 Y_RNA.326-201ENST00000365176 113 ntBASIC2.87□□□□□ -1.95
NUP88Q99567 RNU6-438P-201ENST00000365561 103 ntBASIC2.87□□□□□ -1.95
NUP88Q99567 SNORD14.1-201ENST00000365609 90 ntBASIC2.87□□□□□ -1.95
NUP88Q99567 Y_RNA.389-201ENST00000383924 113 ntBASIC2.87□□□□□ -1.95
NUP88Q99567 AL357139.1-201ENST00000407792 426 ntBASIC2.87□□□□□ -1.95
NUP88Q99567 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.87□□□□□ -1.95
NUP88Q99567 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.87□□□□□ -1.95
NUP88Q99567 AC010095.1-201ENST00000443543 144 ntBASIC2.87□□□□□ -1.95
NUP88Q99567 AC009237.7-201ENST00000447357 229 ntBASIC2.87□□□□□ -1.95
NUP88Q99567 RN7SL636P-201ENST00000497504 294 ntBASIC2.87□□□□□ -1.95
NUP88Q99567 RNU1-41P-201ENST00000516161 162 ntBASIC2.87□□□□□ -1.95
NUP88Q99567 RNU1-48P-201ENST00000516400 162 ntBASIC2.87□□□□□ -1.95
NUP88Q99567 RNA5SP24-201ENST00000516478 95 ntBASIC2.87□□□□□ -1.95
NUP88Q99567 RNU6-911P-201ENST00000516523 104 ntBASIC2.87□□□□□ -1.95
NUP88Q99567 AL442163.3-201ENST00000554110 156 ntBASIC2.87□□□□□ -1.95
NUP88Q99567 AC104984.5-201ENST00000586878 94 ntBASIC2.87□□□□□ -1.95
NUP88Q99567 AC125232.2-201ENST00000592457 143 ntBASIC2.87□□□□□ -1.95
NUP88Q99567 U4atac.1-201ENST00000618345 95 ntBASIC2.87□□□□□ -1.95
NUP88Q99567 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.87□□□□□ -1.95
NUP88Q99567 MIR1248-201ENST00000629190 106 ntBASIC2.87□□□□□ -1.95
NUP88Q99567 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.87□□□□□ -1.95
NUP88Q99567 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
NUP88Q99567 AC135776.4-201ENST00000624300 1904 ntBASIC2.87□□□□□ -1.95
NUP88Q99567 SNORA25B-201ENST00000365507 128 ntBASIC2.86□□□□□ -1.95
NUP88Q99567 RNU1-109P-201ENST00000383960 147 ntBASIC2.86□□□□□ -1.95
NUP88Q99567 RNU6-281P-201ENST00000384212 103 ntBASIC2.86□□□□□ -1.95
NUP88Q99567 Y_RNA.526-201ENST00000384572 110 ntBASIC2.86□□□□□ -1.95
NUP88Q99567 AL359511.1-201ENST00000402970 211 ntBASIC2.86□□□□□ -1.95
NUP88Q99567 RNU6-101P-201ENST00000410323 104 ntBASIC2.86□□□□□ -1.95
NUP88Q99567 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.86□□□□□ -1.95
NUP88Q99567 AC234781.5-201ENST00000508429 271 ntBASIC2.86□□□□□ -1.95
NUP88Q99567 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC2.86□□□□□ -1.95
NUP88Q99567 RNU6-475P-201ENST00000516073 104 ntBASIC2.86□□□□□ -1.95
NUP88Q99567 Y_RNA.683-201ENST00000516508 93 ntBASIC2.86□□□□□ -1.95
NUP88Q99567 SNORA40.14-201ENST00000516543 86 ntBASIC2.86□□□□□ -1.95
NUP88Q99567 RNA5SP490-201ENST00000517141 136 ntBASIC2.86□□□□□ -1.95
NUP88Q99567 MIR4658-201ENST00000584344 65 ntBASIC2.86□□□□□ -1.95
NUP88Q99567 AC046143.2-201ENST00000609789 160 ntBASIC2.86□□□□□ -1.95
NUP88Q99567 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.86□□□□□ -1.95
NUP88Q99567 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.86□□□□□ -1.95
NUP88Q99567 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.85□□□□□ -1.95
NUP88Q99567 RNU1-62P-201ENST00000362599 164 ntBASIC2.85□□□□□ -1.95
NUP88Q99567 RNU6-1301P-201ENST00000362724 104 ntBASIC2.85□□□□□ -1.95
NUP88Q99567 Y_RNA.422-201ENST00000384054 114 ntBASIC2.85□□□□□ -1.95
NUP88Q99567 RNU6-926P-201ENST00000384075 107 ntBASIC2.85□□□□□ -1.95
NUP88Q99567 RNU6-1072P-201ENST00000384703 107 ntBASIC2.85□□□□□ -1.95
NUP88Q99567 RNU6-443P-201ENST00000384780 107 ntBASIC2.85□□□□□ -1.95
NUP88Q99567 AL139095.1-201ENST00000404326 391 ntBASIC2.85□□□□□ -1.95
NUP88Q99567 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.85□□□□□ -1.95
NUP88Q99567 Y_RNA.595-201ENST00000410403 105 ntBASIC2.85□□□□□ -1.95
NUP88Q99567 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.85□□□□□ -1.95
NUP88Q99567 SNORA4.4-201ENST00000515921 135 ntBASIC2.85□□□□□ -1.95
NUP88Q99567 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.85□□□□□ -1.95
NUP88Q99567 AC040926.1-201ENST00000530195 238 ntBASIC2.85□□□□□ -1.95
NUP88Q99567 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.85□□□□□ -1.95
NUP88Q99567 AC025754.2-201ENST00000606491 432 ntBASIC2.85□□□□□ -1.95
NUP88Q99567 SNORD11B-201ENST00000607707 90 ntBASIC2.85□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 138.1 ms