Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC004832.4-201ENST00000608952 331 ntBASIC0.21□□□□□ -2.38
CCDC42Q96M95 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC0.21□□□□□ -2.38
CCDC42Q96M95 MTND5P17-201ENST00000418405 1603 ntBASIC0.2□□□□□ -2.38
CCDC42Q96M95 AP000568.1-201ENST00000282964 442 ntBASIC0.2□□□□□ -2.38
CCDC42Q96M95 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.2□□□□□ -2.38
CCDC42Q96M95 AC009237.7-201ENST00000447357 229 ntBASIC0.2□□□□□ -2.38
CCDC42Q96M95 FGF14-AS1-202ENST00000451630 321 ntTSL 2 BASIC0.2□□□□□ -2.38
CCDC42Q96M95 RNU7-57P-201ENST00000459540 60 ntBASIC0.2□□□□□ -2.38
CCDC42Q96M95 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC0.2□□□□□ -2.38
CCDC42Q96M95 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC0.2□□□□□ -2.38
CCDC42Q96M95 AC016256.1-201ENST00000547971 354 ntBASIC0.2□□□□□ -2.38
CCDC42Q96M95 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.2□□□□□ -2.38
CCDC42Q96M95 MTND5P16-201ENST00000460269 1703 ntBASIC0.19□□□□□ -2.38
CCDC42Q96M95 MIRLET7D-201ENST00000362263 87 ntBASIC0.19□□□□□ -2.38
CCDC42Q96M95 RNU6-157P-201ENST00000383957 107 ntBASIC0.19□□□□□ -2.38
CCDC42Q96M95 Y_RNA.608-201ENST00000410647 95 ntBASIC0.19□□□□□ -2.38
CCDC42Q96M95 AC008134.1-201ENST00000420943 193 ntBASIC0.19□□□□□ -2.38
CCDC42Q96M95 AL354692.1-201ENST00000423044 315 ntBASIC0.19□□□□□ -2.38
CCDC42Q96M95 AC244098.3-201ENST00000424803 96 ntBASIC0.19□□□□□ -2.38
CCDC42Q96M95 AL445305.1-201ENST00000432577 575 ntBASIC0.19□□□□□ -2.38
CCDC42Q96M95 RPL23AP50-201ENST00000434149 455 ntBASIC0.19□□□□□ -2.38
CCDC42Q96M95 DAP3P1-201ENST00000441522 278 ntBASIC0.19□□□□□ -2.38
CCDC42Q96M95 MTCO2P7-201ENST00000446518 666 ntBASIC0.19□□□□□ -2.38
CCDC42Q96M95 LINC01399-202ENST00000458450 244 ntBASIC0.19□□□□□ -2.38
CCDC42Q96M95 MTCO2P6-201ENST00000463134 685 ntBASIC0.19□□□□□ -2.38
CCDC42Q96M95 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC0.19□□□□□ -2.38
CCDC42Q96M95 RNU6-1110P-201ENST00000516462 101 ntBASIC0.19□□□□□ -2.38
CCDC42Q96M95 RNU7-128P-201ENST00000517247 62 ntBASIC0.19□□□□□ -2.38
CCDC42Q96M95 AC025647.1-201ENST00000517879 253 ntBASIC0.19□□□□□ -2.38
CCDC42Q96M95 AC022616.3-201ENST00000523940 148 ntBASIC0.19□□□□□ -2.38
CCDC42Q96M95 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC0.19□□□□□ -2.38
CCDC42Q96M95 7SK.10-201ENST00000621414 298 ntBASIC0.19□□□□□ -2.38
CCDC42Q96M95 Y_RNA.18-201ENST00000362461 102 ntBASIC0.18□□□□□ -2.38
CCDC42Q96M95 RNU6-1240P-201ENST00000365155 104 ntBASIC0.18□□□□□ -2.38
CCDC42Q96M95 Y_RNA.480-201ENST00000384364 102 ntBASIC0.18□□□□□ -2.38
CCDC42Q96M95 RNU6-1067P-201ENST00000384752 107 ntBASIC0.18□□□□□ -2.38
CCDC42Q96M95 MIR936-201ENST00000401264 98 ntBASIC0.18□□□□□ -2.38
CCDC42Q96M95 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC0.18□□□□□ -2.38
CCDC42Q96M95 MTCO2P23-201ENST00000425216 680 ntBASIC0.18□□□□□ -2.38
CCDC42Q96M95 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC0.18□□□□□ -2.38
CCDC42Q96M95 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC0.18□□□□□ -2.38
CCDC42Q96M95 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.18□□□□□ -2.38
CCDC42Q96M95 RNU6-405P-201ENST00000516637 110 ntBASIC0.18□□□□□ -2.38
CCDC42Q96M95 RNU6-467P-201ENST00000517027 110 ntBASIC0.18□□□□□ -2.38
CCDC42Q96M95 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC0.18□□□□□ -2.38
CCDC42Q96M95 AL096861.1-201ENST00000610899 123 ntBASIC0.18□□□□□ -2.38
CCDC42Q96M95 AL139418.1-201ENST00000613613 177 ntBASIC0.18□□□□□ -2.38
CCDC42Q96M95 snoZ196.1-201ENST00000625269 89 ntBASIC0.18□□□□□ -2.38
CCDC42Q96M95 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.17□□□□□ -2.38
CCDC42Q96M95 RNU6-1305P-201ENST00000364353 104 ntBASIC0.17□□□□□ -2.38
CCDC42Q96M95 RNU6-660P-201ENST00000364566 109 ntBASIC0.17□□□□□ -2.38
CCDC42Q96M95 MIR216A-201ENST00000385063 110 ntBASIC0.17□□□□□ -2.38
CCDC42Q96M95 RNA5SP193-201ENST00000410353 107 ntBASIC0.17□□□□□ -2.38
CCDC42Q96M95 snoU13.6-201ENST00000458785 104 ntBASIC0.17□□□□□ -2.38
CCDC42Q96M95 snoU13.25-201ENST00000458945 104 ntBASIC0.17□□□□□ -2.38
CCDC42Q96M95 AC108740.1-201ENST00000498629 225 ntBASIC0.17□□□□□ -2.38
CCDC42Q96M95 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC0.17□□□□□ -2.38
CCDC42Q96M95 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.17□□□□□ -2.38
CCDC42Q96M95 SCARNA24.1-201ENST00000516465 137 ntBASIC0.17□□□□□ -2.38
CCDC42Q96M95 AC022868.1-201ENST00000517767 391 ntBASIC0.17□□□□□ -2.38
CCDC42Q96M95 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC0.17□□□□□ -2.38
CCDC42Q96M95 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC0.17□□□□□ -2.38
CCDC42Q96M95 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC0.17□□□□□ -2.38
CCDC42Q96M95 AC131055.1-201ENST00000584626 316 ntBASIC0.17□□□□□ -2.38
CCDC42Q96M95 AC004223.2-201ENST00000590309 544 ntBASIC0.17□□□□□ -2.38
CCDC42Q96M95 SNORA28-201ENST00000606769 126 ntBASIC0.17□□□□□ -2.38
CCDC42Q96M95 AL031667.3-201ENST00000620124 655 ntBASIC0.17□□□□□ -2.38
CCDC42Q96M95 AC011155.2-201ENST00000623202 216 ntBASIC0.17□□□□□ -2.38
CCDC42Q96M95 AL078595.3-201ENST00000623815 1166 ntBASIC0.17□□□□□ -2.38
CCDC42Q96M95 CEP290-203ENST00000547691 5968 ntTSL 1 (best) BASIC0.16□□□□□ -2.38
CCDC42Q96M95 RNU6-1287P-201ENST00000362914 107 ntBASIC0.16□□□□□ -2.38
CCDC42Q96M95 RNY1P12-201ENST00000364251 105 ntBASIC0.16□□□□□ -2.38
CCDC42Q96M95 RNU6-1060P-201ENST00000384664 107 ntBASIC0.16□□□□□ -2.38
CCDC42Q96M95 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.16□□□□□ -2.38
CCDC42Q96M95 RNA5SP504-201ENST00000410676 117 ntBASIC0.16□□□□□ -2.38
CCDC42Q96M95 AC004866.1-201ENST00000411748 78 ntBASIC0.16□□□□□ -2.38
CCDC42Q96M95 RPS3AP3-201ENST00000411933 242 ntBASIC0.16□□□□□ -2.38
CCDC42Q96M95 RPS26P42-201ENST00000413485 326 ntBASIC0.16□□□□□ -2.38
CCDC42Q96M95 RNU6-1132P-201ENST00000459214 107 ntBASIC0.16□□□□□ -2.38
CCDC42Q96M95 RNU6-221P-201ENST00000459541 99 ntBASIC0.16□□□□□ -2.38
CCDC42Q96M95 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC0.16□□□□□ -2.38
CCDC42Q96M95 AC079140.5-201ENST00000507882 310 ntBASIC0.16□□□□□ -2.38
CCDC42Q96M95 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC0.16□□□□□ -2.38
CCDC42Q96M95 SNORA25.17-201ENST00000517184 124 ntBASIC0.16□□□□□ -2.38
CCDC42Q96M95 MTND4LP26-201ENST00000518144 282 ntBASIC0.16□□□□□ -2.38
CCDC42Q96M95 AC092354.1-201ENST00000606057 376 ntBASIC0.16□□□□□ -2.38
CCDC42Q96M95 AC017083.3-201ENST00000609955 700 ntBASIC0.16□□□□□ -2.38
CCDC42Q96M95 AC022418.1-201ENST00000624118 445 ntBASIC0.16□□□□□ -2.38
CCDC42Q96M95 U6.114-201ENST00000636407 96 ntBASIC0.16□□□□□ -2.38
CCDC42Q96M95 RNU6-1327P-201ENST00000365302 105 ntBASIC0.15□□□□□ -2.39
CCDC42Q96M95 RNU6-424P-201ENST00000384367 105 ntBASIC0.15□□□□□ -2.39
CCDC42Q96M95 AL162725.1-201ENST00000435405 301 ntBASIC0.15□□□□□ -2.39
CCDC42Q96M95 STAG3L5P-204ENST00000443759 179 ntBASIC0.15□□□□□ -2.39
CCDC42Q96M95 USP9YP25-201ENST00000457708 443 ntBASIC0.15□□□□□ -2.39
CCDC42Q96M95 RNU7-94P-201ENST00000459576 63 ntBASIC0.15□□□□□ -2.39
CCDC42Q96M95 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.15□□□□□ -2.39
CCDC42Q96M95 RNA5SP220-201ENST00000516298 104 ntBASIC0.15□□□□□ -2.39
CCDC42Q96M95 RNU6-1220P-201ENST00000517126 108 ntBASIC0.15□□□□□ -2.39
CCDC42Q96M95 AC109810.1-201ENST00000534066 224 ntBASIC0.15□□□□□ -2.39
CCDC42Q96M95 NTS-203ENST00000551529 801 ntTSL 3 BASIC0.15□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms