Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 RN7SKP49-201ENST00000516675 260 ntBASIC2.37□□□□□ -2.03
CLIP4Q8N3C7 RNU6-570P-201ENST00000517051 105 ntBASIC2.37□□□□□ -2.03
CLIP4Q8N3C7 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC2.37□□□□□ -2.03
CLIP4Q8N3C7 AC090616.3-201ENST00000582184 217 ntBASIC2.37□□□□□ -2.03
CLIP4Q8N3C7 MIR4765-201ENST00000585007 77 ntBASIC2.37□□□□□ -2.03
CLIP4Q8N3C7 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.37□□□□□ -2.03
CLIP4Q8N3C7 AC062037.2-201ENST00000610137 73 ntBASIC2.37□□□□□ -2.03
CLIP4Q8N3C7 AC005520.5-201ENST00000613926 164 ntBASIC2.37□□□□□ -2.03
CLIP4Q8N3C7 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.37□□□□□ -2.03
CLIP4Q8N3C7 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
CLIP4Q8N3C7 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.36□□□□□ -2.03
CLIP4Q8N3C7 RNU4-15P-201ENST00000362613 141 ntBASIC2.36□□□□□ -2.03
CLIP4Q8N3C7 Y_RNA.288-201ENST00000364854 92 ntBASIC2.36□□□□□ -2.03
CLIP4Q8N3C7 RNU6-1145P-201ENST00000384246 107 ntBASIC2.36□□□□□ -2.03
CLIP4Q8N3C7 MIR329-1-201ENST00000385028 80 ntBASIC2.36□□□□□ -2.03
CLIP4Q8N3C7 RNU6-1001P-201ENST00000411265 100 ntBASIC2.36□□□□□ -2.03
CLIP4Q8N3C7 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.36□□□□□ -2.03
CLIP4Q8N3C7 RPL21P38-201ENST00000418090 167 ntBASIC2.36□□□□□ -2.03
CLIP4Q8N3C7 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.36□□□□□ -2.03
CLIP4Q8N3C7 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.36□□□□□ -2.03
CLIP4Q8N3C7 RNU6-408P-201ENST00000515910 100 ntBASIC2.36□□□□□ -2.03
CLIP4Q8N3C7 SNORA25.14-201ENST00000516481 132 ntBASIC2.36□□□□□ -2.03
CLIP4Q8N3C7 RNU6-1271P-201ENST00000517049 105 ntBASIC2.36□□□□□ -2.03
CLIP4Q8N3C7 AC136932.1-201ENST00000574771 208 ntBASIC2.36□□□□□ -2.03
CLIP4Q8N3C7 ELOCP29-201ENST00000588193 334 ntBASIC2.36□□□□□ -2.03
CLIP4Q8N3C7 PCGEM1.1-201ENST00000613431 131 ntBASIC2.36□□□□□ -2.03
CLIP4Q8N3C7 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.36□□□□□ -2.03
CLIP4Q8N3C7 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
CLIP4Q8N3C7 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.36□□□□□ -2.03
CLIP4Q8N3C7 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 AC080128.1-201ENST00000474389 1917 ntBASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 AC010329.5-201ENST00000623497 2174 ntBASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 snoU2_19.1-201ENST00000362361 80 ntBASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 Y_RNA.483-201ENST00000384380 101 ntBASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 MT-TG-201ENST00000387429 68 ntBASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 SNORD115-46-201ENST00000390982 71 ntBASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 MRPL35P1-201ENST00000404272 572 ntBASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 RNU2-52P-201ENST00000410680 190 ntBASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 MICF-203ENST00000432679 129 ntBASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 TRAPPC2P8-201ENST00000440676 396 ntBASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 AC010095.1-201ENST00000443543 144 ntBASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 RPS3P1-201ENST00000456781 192 ntBASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 SNORD109B-201ENST00000458961 67 ntBASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 SNORD109A-201ENST00000459128 67 ntBASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 AC025465.3-201ENST00000510570 311 ntBASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 AC010999.1-201ENST00000611856 324 ntBASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 MIR376A1-201ENST00000616574 68 ntBASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 U6.104-201ENST00000637979 90 ntBASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 LINC02555-201ENST00000563933 1951 ntBASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.35□□□□□ -2.03
CLIP4Q8N3C7 BX322639.1-202ENST00000423987 2213 ntBASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 AC010615.1-201ENST00000594254 1764 ntBASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 AC005336.3-201ENST00000623833 2679 ntBASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 Y_RNA.307-201ENST00000365022 117 ntBASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 RNU6-937P-201ENST00000384325 106 ntBASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 MIR215-201ENST00000384858 110 ntBASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 FO393413.1-201ENST00000402892 195 ntBASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 RNA5SP201-201ENST00000410316 124 ntBASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 EIF4EP4-201ENST00000424916 578 ntBASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 RPL30P4-201ENST00000429309 333 ntBASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 AC145146.1-201ENST00000496370 254 ntBASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 AC096725.1-201ENST00000514266 313 ntBASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 IGLV3-17-201ENST00000519099 244 ntBASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 EIF4A1P12-201ENST00000551910 141 ntBASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 GTF3AP2-201ENST00000557014 266 ntBASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 MIR4300-201ENST00000581016 96 ntBASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 MIR5092-201ENST00000583139 88 ntBASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.34□□□□□ -2.03
CLIP4Q8N3C7 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
CLIP4Q8N3C7 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
CLIP4Q8N3C7 AC026241.1-201ENST00000517873 2142 ntBASIC2.33□□□□□ -2.04
CLIP4Q8N3C7 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
CLIP4Q8N3C7 U3.9-201ENST00000363823 204 ntBASIC2.33□□□□□ -2.04
CLIP4Q8N3C7 Y_RNA.179-201ENST00000363844 90 ntBASIC2.33□□□□□ -2.04
CLIP4Q8N3C7 Y_RNA.476-201ENST00000384347 108 ntBASIC2.33□□□□□ -2.04
CLIP4Q8N3C7 MIR627-201ENST00000384979 97 ntBASIC2.33□□□□□ -2.04
CLIP4Q8N3C7 Y_RNA.595-201ENST00000410403 105 ntBASIC2.33□□□□□ -2.04
CLIP4Q8N3C7 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.33□□□□□ -2.04
CLIP4Q8N3C7 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.33□□□□□ -2.04
CLIP4Q8N3C7 SNORD127-201ENST00000458892 86 ntBASIC2.33□□□□□ -2.04
CLIP4Q8N3C7 RNU6-1132P-201ENST00000459214 107 ntBASIC2.33□□□□□ -2.04
CLIP4Q8N3C7 TRBVB-201ENST00000477100 408 ntBASIC2.33□□□□□ -2.04
CLIP4Q8N3C7 RNA5SP112-201ENST00000515937 99 ntBASIC2.33□□□□□ -2.04
CLIP4Q8N3C7 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC2.33□□□□□ -2.04
CLIP4Q8N3C7 AC023157.2-201ENST00000540596 141 ntBASIC2.33□□□□□ -2.04
CLIP4Q8N3C7 AC103810.1-201ENST00000579873 453 ntBASIC2.33□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 140.9 ms