Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC2.9□□□□□ -1.95
VRK3Q8IV63 AL355596.1-201ENST00000565399 3996 ntBASIC2.9□□□□□ -1.95
VRK3Q8IV63 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.9□□□□□ -1.95
VRK3Q8IV63 AL035425.3-201ENST00000564206 4996 ntBASIC2.9□□□□□ -1.95
VRK3Q8IV63 AC008264.2-201ENST00000610193 3731 ntBASIC2.9□□□□□ -1.95
VRK3Q8IV63 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.9□□□□□ -1.95
VRK3Q8IV63 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC2.9□□□□□ -1.95
VRK3Q8IV63 OR10AG1-202ENST00000641071 2807 ntAPPRIS P1 BASIC2.89□□□□□ -1.95
VRK3Q8IV63 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.89□□□□□ -1.95
VRK3Q8IV63 AC002543.1-201ENST00000299783 1954 ntBASIC2.89□□□□□ -1.95
VRK3Q8IV63 RNU6-50P-201ENST00000362356 103 ntBASIC2.89□□□□□ -1.95
VRK3Q8IV63 RNU6-1130P-201ENST00000365434 107 ntBASIC2.89□□□□□ -1.95
VRK3Q8IV63 RNU6-1310P-201ENST00000384153 107 ntBASIC2.89□□□□□ -1.95
VRK3Q8IV63 SNORA48.2-201ENST00000390926 124 ntBASIC2.89□□□□□ -1.95
VRK3Q8IV63 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.89□□□□□ -1.95
VRK3Q8IV63 RNA5SP129-201ENST00000410276 118 ntBASIC2.89□□□□□ -1.95
VRK3Q8IV63 AC009963.1-201ENST00000417265 157 ntBASIC2.89□□□□□ -1.95
VRK3Q8IV63 AC099548.1-201ENST00000421443 426 ntBASIC2.89□□□□□ -1.95
VRK3Q8IV63 AC019205.3-201ENST00000424573 156 ntBASIC2.89□□□□□ -1.95
VRK3Q8IV63 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC2.89□□□□□ -1.95
VRK3Q8IV63 LINC01162-201ENST00000447262 447 ntTSL 5 BASIC2.89□□□□□ -1.95
VRK3Q8IV63 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.89□□□□□ -1.95
VRK3Q8IV63 RPL26P9-201ENST00000457466 433 ntBASIC2.89□□□□□ -1.95
VRK3Q8IV63 Y_RNA.637-201ENST00000459424 114 ntBASIC2.89□□□□□ -1.95
VRK3Q8IV63 RPL27AP5-201ENST00000469428 449 ntBASIC2.89□□□□□ -1.95
VRK3Q8IV63 HMGB3P3-201ENST00000510526 400 ntBASIC2.89□□□□□ -1.95
VRK3Q8IV63 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.89□□□□□ -1.95
VRK3Q8IV63 RN7SKP43-201ENST00000516173 320 ntBASIC2.89□□□□□ -1.95
VRK3Q8IV63 SNORA31.16-201ENST00000516773 139 ntBASIC2.89□□□□□ -1.95
VRK3Q8IV63 AC115990.1-201ENST00000526957 301 ntBASIC2.89□□□□□ -1.95
VRK3Q8IV63 FAM35CP-201ENST00000554755 2470 ntBASIC2.89□□□□□ -1.95
VRK3Q8IV63 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.89□□□□□ -1.95
VRK3Q8IV63 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.89□□□□□ -1.95
VRK3Q8IV63 AC091932.3-201ENST00000624223 323 ntBASIC2.89□□□□□ -1.95
VRK3Q8IV63 AC092593.1-201ENST00000515413 1815 ntBASIC2.89□□□□□ -1.95
VRK3Q8IV63 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
VRK3Q8IV63 FAM35BP-202ENST00000497389 3337 ntBASIC2.88□□□□□ -1.95
VRK3Q8IV63 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
VRK3Q8IV63 Y_RNA.7-201ENST00000362352 102 ntBASIC2.88□□□□□ -1.95
VRK3Q8IV63 Y_RNA.121-201ENST00000363309 113 ntBASIC2.88□□□□□ -1.95
VRK3Q8IV63 SNORA72.2-201ENST00000365028 127 ntBASIC2.88□□□□□ -1.95
VRK3Q8IV63 MIR128-1-201ENST00000384921 82 ntBASIC2.88□□□□□ -1.95
VRK3Q8IV63 RNU6-1248P-201ENST00000391096 64 ntBASIC2.88□□□□□ -1.95
VRK3Q8IV63 SNORA48.5-201ENST00000391143 135 ntBASIC2.88□□□□□ -1.95
VRK3Q8IV63 AL512633.1-201ENST00000399931 655 ntBASIC2.88□□□□□ -1.95
VRK3Q8IV63 AP000567.1-201ENST00000406413 156 ntBASIC2.88□□□□□ -1.95
VRK3Q8IV63 AC024067.1-201ENST00000426199 223 ntBASIC2.88□□□□□ -1.95
VRK3Q8IV63 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.88□□□□□ -1.95
VRK3Q8IV63 RPS15AP5-201ENST00000436276 388 ntBASIC2.88□□□□□ -1.95
VRK3Q8IV63 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.88□□□□□ -1.95
VRK3Q8IV63 AC090525.1-201ENST00000479116 478 ntBASIC2.88□□□□□ -1.95
VRK3Q8IV63 AC005840.1-201ENST00000498412 377 ntBASIC2.88□□□□□ -1.95
VRK3Q8IV63 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.88□□□□□ -1.95
VRK3Q8IV63 RNU5F-8P-201ENST00000515941 111 ntBASIC2.88□□□□□ -1.95
VRK3Q8IV63 CYP4A27P-201ENST00000567218 190 ntBASIC2.88□□□□□ -1.95
VRK3Q8IV63 MIR3145-201ENST00000580727 82 ntBASIC2.88□□□□□ -1.95
VRK3Q8IV63 DEFB117-201ENST00000602356 141 ntBASIC2.88□□□□□ -1.95
VRK3Q8IV63 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
VRK3Q8IV63 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
VRK3Q8IV63 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.88□□□□□ -1.95
VRK3Q8IV63 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC2.87□□□□□ -1.95
VRK3Q8IV63 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.87□□□□□ -1.95
VRK3Q8IV63 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
VRK3Q8IV63 Y_RNA.23-201ENST00000362496 106 ntBASIC2.87□□□□□ -1.95
VRK3Q8IV63 Y_RNA.75-201ENST00000362927 97 ntBASIC2.87□□□□□ -1.95
VRK3Q8IV63 Y_RNA.400-201ENST00000383963 111 ntBASIC2.87□□□□□ -1.95
VRK3Q8IV63 RNU6-22P-201ENST00000384355 107 ntBASIC2.87□□□□□ -1.95
VRK3Q8IV63 RNU6-959P-201ENST00000384671 107 ntBASIC2.87□□□□□ -1.95
VRK3Q8IV63 Y_RNA.568-201ENST00000384742 113 ntBASIC2.87□□□□□ -1.95
VRK3Q8IV63 SNORA40.19-201ENST00000390846 128 ntBASIC2.87□□□□□ -1.95
VRK3Q8IV63 U3.26-201ENST00000391236 204 ntBASIC2.87□□□□□ -1.95
VRK3Q8IV63 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC2.87□□□□□ -1.95
VRK3Q8IV63 YPEL5P1-201ENST00000419731 367 ntBASIC2.87□□□□□ -1.95
VRK3Q8IV63 IFNA11P-201ENST00000446352 526 ntBASIC2.87□□□□□ -1.95
VRK3Q8IV63 HMGN2P16-201ENST00000456802 261 ntBASIC2.87□□□□□ -1.95
VRK3Q8IV63 S100A11P2-201ENST00000467589 312 ntBASIC2.87□□□□□ -1.95
VRK3Q8IV63 RPS29P2-201ENST00000479278 136 ntBASIC2.87□□□□□ -1.95
VRK3Q8IV63 AC006483.1-201ENST00000487308 313 ntBASIC2.87□□□□□ -1.95
VRK3Q8IV63 AC140059.1-201ENST00000489238 361 ntBASIC2.87□□□□□ -1.95
VRK3Q8IV63 RNU6-479P-201ENST00000516348 105 ntBASIC2.87□□□□□ -1.95
VRK3Q8IV63 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.87□□□□□ -1.95
VRK3Q8IV63 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.87□□□□□ -1.95
VRK3Q8IV63 MIR3674-201ENST00000636576 68 ntBASIC2.87□□□□□ -1.95
VRK3Q8IV63 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.87□□□□□ -1.95
VRK3Q8IV63 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.87□□□□□ -1.95
VRK3Q8IV63 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC2.87□□□□□ -1.95
VRK3Q8IV63 AP003122.5-201ENST00000527668 3766 ntBASIC2.87□□□□□ -1.95
VRK3Q8IV63 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.87□□□□□ -1.95
VRK3Q8IV63 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
VRK3Q8IV63 Y_RNA.238-201ENST00000364441 102 ntBASIC2.86□□□□□ -1.95
VRK3Q8IV63 RNU6-449P-201ENST00000383914 107 ntBASIC2.86□□□□□ -1.95
VRK3Q8IV63 RNU6-131P-201ENST00000391144 107 ntBASIC2.86□□□□□ -1.95
VRK3Q8IV63 AL031121.1-201ENST00000406553 254 ntBASIC2.86□□□□□ -1.95
VRK3Q8IV63 RNU2-51P-201ENST00000410708 197 ntBASIC2.86□□□□□ -1.95
VRK3Q8IV63 AC244505.4-201ENST00000434905 287 ntBASIC2.86□□□□□ -1.95
VRK3Q8IV63 SSXP5-201ENST00000443473 287 ntBASIC2.86□□□□□ -1.95
VRK3Q8IV63 AIG1P1-201ENST00000503376 148 ntBASIC2.86□□□□□ -1.95
VRK3Q8IV63 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.86□□□□□ -1.95
VRK3Q8IV63 RNU6-436P-201ENST00000516171 114 ntBASIC2.86□□□□□ -1.95
VRK3Q8IV63 RNU6-155P-201ENST00000516347 100 ntBASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 151.8 ms