Protein–RNA interactions for Protein: Q15858

SCN9A, Sodium channel protein type 9 subunit alpha, humanhuman

Predictions only

Length 1,988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9AQ15858 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.64□□□□□ -2.31
SCN9AQ15858 RNU6-169P-201ENST00000365336 107 ntBASIC0.64□□□□□ -2.31
SCN9AQ15858 RNU6-827P-201ENST00000365553 106 ntBASIC0.64□□□□□ -2.31
SCN9AQ15858 RNU6-245P-201ENST00000384020 107 ntBASIC0.64□□□□□ -2.31
SCN9AQ15858 RNU6-456P-201ENST00000384493 107 ntBASIC0.64□□□□□ -2.31
SCN9AQ15858 RNU6-606P-201ENST00000384721 111 ntBASIC0.64□□□□□ -2.31
SCN9AQ15858 MIR515-2-201ENST00000384883 83 ntBASIC0.64□□□□□ -2.31
SCN9AQ15858 MIR515-1-201ENST00000384884 83 ntBASIC0.64□□□□□ -2.31
SCN9AQ15858 SNORA40.3-201ENST00000390964 122 ntBASIC0.64□□□□□ -2.31
SCN9AQ15858 RNU6-903P-201ENST00000391270 109 ntBASIC0.64□□□□□ -2.31
SCN9AQ15858 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC0.64□□□□□ -2.31
SCN9AQ15858 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.64□□□□□ -2.31
SCN9AQ15858 HSPE1P13-201ENST00000451143 297 ntBASIC0.64□□□□□ -2.31
SCN9AQ15858 RNU2-34P-201ENST00000516534 121 ntBASIC0.64□□□□□ -2.31
SCN9AQ15858 SNORA18.6-201ENST00000516792 115 ntBASIC0.64□□□□□ -2.31
SCN9AQ15858 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.64□□□□□ -2.31
SCN9AQ15858 MIR4775-201ENST00000581168 75 ntBASIC0.64□□□□□ -2.31
SCN9AQ15858 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC0.64□□□□□ -2.31
SCN9AQ15858 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.64□□□□□ -2.31
SCN9AQ15858 RNU6-545P-201ENST00000362681 104 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 SNORA32.2-201ENST00000384049 122 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 Y_RNA.504-201ENST00000384481 104 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 MIR608-201ENST00000384820 100 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 SNORD73A-201ENST00000386062 65 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 AC010099.3-201ENST00000423896 409 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 RAB28P5-201ENST00000427490 651 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 AC073910.1-201ENST00000445047 438 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.63□□□□□ -2.31
SCN9AQ15858 AK3P2-201ENST00000507976 429 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 KRTAP13-6P-201ENST00000508999 371 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 SCARNA24.1-201ENST00000516465 137 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 MTCO2P4-201ENST00000517968 247 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 AC009094.1-201ENST00000564443 426 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC0.63□□□□□ -2.31
SCN9AQ15858 AC002044.1-201ENST00000606707 158 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 BX322639.1-202ENST00000423987 2213 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC0.63□□□□□ -2.31
SCN9AQ15858 RNU6-1127P-201ENST00000384580 107 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 RNU6-417P-201ENST00000384712 107 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 MRPL35P1-201ENST00000404272 572 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 USP9YP28-201ENST00000435142 589 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 AL031274.1-201ENST00000450334 232 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC0.63□□□□□ -2.31
SCN9AQ15858 HMGN1P12-201ENST00000499125 195 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC0.63□□□□□ -2.31
SCN9AQ15858 RNA5SP503-201ENST00000517047 117 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 AC024995.1-201ENST00000523014 93 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 AC019288.1-201ENST00000557918 224 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.63□□□□□ -2.31
SCN9AQ15858 MIR4703-201ENST00000577728 79 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 AL162424.1-201ENST00000602325 221 ntBASIC0.63□□□□□ -2.31
SCN9AQ15858 RNU6-82P-201ENST00000363970 107 ntBASIC0.62□□□□□ -2.31
SCN9AQ15858 RNU6-266P-201ENST00000364225 107 ntBASIC0.62□□□□□ -2.31
SCN9AQ15858 RNU6-534P-201ENST00000364877 106 ntBASIC0.62□□□□□ -2.31
SCN9AQ15858 VTRNA1-3-201ENST00000365645 89 ntBASIC0.62□□□□□ -2.31
SCN9AQ15858 RNU6-418P-201ENST00000384035 107 ntBASIC0.62□□□□□ -2.31
SCN9AQ15858 MIR92A1-201ENST00000385233 78 ntBASIC0.62□□□□□ -2.31
SCN9AQ15858 RNU6-910P-201ENST00000390844 107 ntBASIC0.62□□□□□ -2.31
SCN9AQ15858 FGFR1OP2P1-201ENST00000395943 500 ntBASIC0.62□□□□□ -2.31
SCN9AQ15858 AL117342.1-201ENST00000404861 406 ntBASIC0.62□□□□□ -2.31
SCN9AQ15858 AL606490.4-201ENST00000423117 127 ntBASIC0.62□□□□□ -2.31
SCN9AQ15858 AC000111.3-201ENST00000433478 193 ntBASIC0.62□□□□□ -2.31
SCN9AQ15858 HMGN2P34-201ENST00000437647 269 ntBASIC0.62□□□□□ -2.31
SCN9AQ15858 AC074290.1-201ENST00000448883 135 ntBASIC0.62□□□□□ -2.31
SCN9AQ15858 ZNF114P1-201ENST00000453500 292 ntBASIC0.62□□□□□ -2.31
SCN9AQ15858 SNRPGP20-201ENST00000604477 205 ntBASIC0.62□□□□□ -2.31
SCN9AQ15858 AL022345.2-201ENST00000606307 135 ntBASIC0.62□□□□□ -2.31
SCN9AQ15858 AL451064.1-201ENST00000607718 471 ntBASIC0.62□□□□□ -2.31
SCN9AQ15858 GHRLOS.1-201ENST00000610995 70 ntBASIC0.62□□□□□ -2.31
SCN9AQ15858 RNU6-1123P-201ENST00000362347 106 ntBASIC0.61□□□□□ -2.31
SCN9AQ15858 RNU6-1286P-201ENST00000383871 107 ntBASIC0.61□□□□□ -2.31
SCN9AQ15858 RNU6-975P-201ENST00000384296 105 ntBASIC0.61□□□□□ -2.31
SCN9AQ15858 USP9YP14-201ENST00000430663 563 ntBASIC0.61□□□□□ -2.31
SCN9AQ15858 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC0.61□□□□□ -2.31
SCN9AQ15858 UBE2D3P4-201ENST00000441973 436 ntBASIC0.61□□□□□ -2.31
SCN9AQ15858 AL133217.1-201ENST00000450980 425 ntBASIC0.61□□□□□ -2.31
SCN9AQ15858 RPS20P10-201ENST00000451209 253 ntBASIC0.61□□□□□ -2.31
SCN9AQ15858 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC0.61□□□□□ -2.31
SCN9AQ15858 RNU6-1041P-201ENST00000516254 102 ntBASIC0.61□□□□□ -2.31
SCN9AQ15858 SCARNA16.2-201ENST00000516520 172 ntBASIC0.61□□□□□ -2.31
SCN9AQ15858 AP002963.1-201ENST00000530590 184 ntBASIC0.61□□□□□ -2.31
SCN9AQ15858 AC146944.4-201ENST00000602697 718 ntBASIC0.61□□□□□ -2.31
SCN9AQ15858 AL022161.1-201ENST00000604390 213 ntBASIC0.61□□□□□ -2.31
SCN9AQ15858 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC0.61□□□□□ -2.31
SCN9AQ15858 MPP6-209ENST00000625307 126 ntTSL 5 BASIC0.61□□□□□ -2.31
SCN9AQ15858 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.61□□□□□ -2.31
SCN9AQ15858 RNU6-715P-201ENST00000365204 103 ntBASIC0.61□□□□□ -2.31
SCN9AQ15858 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.61□□□□□ -2.31
SCN9AQ15858 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.61□□□□□ -2.31
SCN9AQ15858 AL356776.1-201ENST00000406574 447 ntBASIC0.61□□□□□ -2.31
SCN9AQ15858 AC012306.1-201ENST00000423267 114 ntBASIC0.61□□□□□ -2.31
SCN9AQ15858 AC245047.7-201ENST00000440265 293 ntBASIC0.61□□□□□ -2.31
SCN9AQ15858 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC0.61□□□□□ -2.31
SCN9AQ15858 AC022364.2-201ENST00000457963 554 ntBASIC0.61□□□□□ -2.31
SCN9AQ15858 RPS29P27-201ENST00000463711 170 ntBASIC0.61□□□□□ -2.31
SCN9AQ15858 MTCO3P38-201ENST00000468910 766 ntBASIC0.61□□□□□ -2.31
SCN9AQ15858 RPS27P22-201ENST00000478056 241 ntBASIC0.61□□□□□ -2.31
SCN9AQ15858 HMGB1P29-201ENST00000505659 499 ntBASIC0.61□□□□□ -2.31
SCN9AQ15858 RNU6-948P-201ENST00000516374 107 ntBASIC0.61□□□□□ -2.31
SCN9AQ15858 MTND4P7-201ENST00000523876 130 ntBASIC0.61□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms