Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 MIR181A2-201ENST00000384863 110 ntBASIC3.31□□□□□ -1.88
SF3A1Q15459 MIR512-1-201ENST00000384913 84 ntBASIC3.31□□□□□ -1.88
SF3A1Q15459 RNA5SP504-201ENST00000410676 117 ntBASIC3.31□□□□□ -1.88
SF3A1Q15459 SRIP3-201ENST00000413200 219 ntBASIC3.31□□□□□ -1.88
SF3A1Q15459 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC3.31□□□□□ -1.88
SF3A1Q15459 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC3.31□□□□□ -1.88
SF3A1Q15459 AC016925.1-201ENST00000458303 298 ntBASIC3.31□□□□□ -1.88
SF3A1Q15459 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.31□□□□□ -1.88
SF3A1Q15459 RNU6-408P-201ENST00000515910 100 ntBASIC3.31□□□□□ -1.88
SF3A1Q15459 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.31□□□□□ -1.88
SF3A1Q15459 AL360085.1-201ENST00000604713 532 ntBASIC3.31□□□□□ -1.88
SF3A1Q15459 AL121655.1-201ENST00000605811 308 ntBASIC3.31□□□□□ -1.88
SF3A1Q15459 AC090115.4-201ENST00000609970 188 ntBASIC3.31□□□□□ -1.88
SF3A1Q15459 AC240442.1-201ENST00000616055 283 ntBASIC3.31□□□□□ -1.88
SF3A1Q15459 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.3□□□□□ -1.88
SF3A1Q15459 SNORD115-3-201ENST00000363100 82 ntBASIC3.3□□□□□ -1.88
SF3A1Q15459 Y_RNA.498-201ENST00000384460 102 ntBASIC3.3□□□□□ -1.88
SF3A1Q15459 AL356057.3-201ENST00000402607 340 ntBASIC3.3□□□□□ -1.88
SF3A1Q15459 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.3□□□□□ -1.88
SF3A1Q15459 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.3□□□□□ -1.88
SF3A1Q15459 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.3□□□□□ -1.88
SF3A1Q15459 RNU6-397P-201ENST00000516226 104 ntBASIC3.3□□□□□ -1.88
SF3A1Q15459 AC018448.1-201ENST00000552843 316 ntBASIC3.3□□□□□ -1.88
SF3A1Q15459 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.3□□□□□ -1.88
SF3A1Q15459 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC3.29□□□□□ -1.88
SF3A1Q15459 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
SF3A1Q15459 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.29□□□□□ -1.88
SF3A1Q15459 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.29□□□□□ -1.88
SF3A1Q15459 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
SF3A1Q15459 Y_RNA.510-201ENST00000384511 114 ntBASIC3.29□□□□□ -1.88
SF3A1Q15459 SNORD88.1-201ENST00000408684 91 ntBASIC3.29□□□□□ -1.88
SF3A1Q15459 RNU6-985P-201ENST00000410182 104 ntBASIC3.29□□□□□ -1.88
SF3A1Q15459 U8.20-201ENST00000459445 131 ntBASIC3.29□□□□□ -1.88
SF3A1Q15459 SCGB1D5P-201ENST00000515134 247 ntBASIC3.29□□□□□ -1.88
SF3A1Q15459 AC074133.1-201ENST00000515696 183 ntBASIC3.29□□□□□ -1.88
SF3A1Q15459 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC3.29□□□□□ -1.88
SF3A1Q15459 AC113195.1-201ENST00000579952 141 ntBASIC3.29□□□□□ -1.88
SF3A1Q15459 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.29□□□□□ -1.88
SF3A1Q15459 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.29□□□□□ -1.88
SF3A1Q15459 Y_RNA.772-201ENST00000606692 102 ntBASIC3.29□□□□□ -1.88
SF3A1Q15459 AC022202.1-201ENST00000613515 211 ntBASIC3.29□□□□□ -1.88
SF3A1Q15459 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.29□□□□□ -1.88
SF3A1Q15459 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
SF3A1Q15459 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
SF3A1Q15459 MIR422A-201ENST00000362286 90 ntBASIC3.28□□□□□ -1.88
SF3A1Q15459 SNORA63.7-201ENST00000365579 123 ntBASIC3.28□□□□□ -1.88
SF3A1Q15459 SNORA67.2-201ENST00000384300 149 ntBASIC3.28□□□□□ -1.88
SF3A1Q15459 HMGN2P35-201ENST00000412164 270 ntBASIC3.28□□□□□ -1.88
SF3A1Q15459 DPH3P2-201ENST00000422618 250 ntBASIC3.28□□□□□ -1.88
SF3A1Q15459 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.28□□□□□ -1.88
SF3A1Q15459 TRAPPC2P8-201ENST00000440676 396 ntBASIC3.28□□□□□ -1.88
SF3A1Q15459 RPEP5-201ENST00000441137 268 ntBASIC3.28□□□□□ -1.88
SF3A1Q15459 AL031274.2-201ENST00000599419 203 ntBASIC3.28□□□□□ -1.88
SF3A1Q15459 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
SF3A1Q15459 Y_RNA.380-201ENST00000365663 111 ntBASIC3.27□□□□□ -1.89
SF3A1Q15459 Y_RNA.458-201ENST00000384240 102 ntBASIC3.27□□□□□ -1.89
SF3A1Q15459 Y_RNA.551-201ENST00000384661 102 ntBASIC3.27□□□□□ -1.89
SF3A1Q15459 MIR1262-201ENST00000408276 93 ntBASIC3.27□□□□□ -1.89
SF3A1Q15459 RNU4ATAC16P-201ENST00000408512 126 ntBASIC3.27□□□□□ -1.89
SF3A1Q15459 MIR1252-201ENST00000408861 65 ntBASIC3.27□□□□□ -1.89
SF3A1Q15459 EDDM3CP-201ENST00000415977 425 ntBASIC3.27□□□□□ -1.89
SF3A1Q15459 AC123900.1-201ENST00000420390 96 ntBASIC3.27□□□□□ -1.89
SF3A1Q15459 AC245102.2-201ENST00000448956 180 ntBASIC3.27□□□□□ -1.89
SF3A1Q15459 AC067942.3-201ENST00000512025 362 ntBASIC3.27□□□□□ -1.89
SF3A1Q15459 RNU6-327P-201ENST00000516270 127 ntBASIC3.27□□□□□ -1.89
SF3A1Q15459 Y_RNA.720-201ENST00000517166 92 ntBASIC3.27□□□□□ -1.89
SF3A1Q15459 AP002404.1-201ENST00000532005 451 ntBASIC3.27□□□□□ -1.89
SF3A1Q15459 AC008737.2-201ENST00000599446 118 ntBASIC3.27□□□□□ -1.89
SF3A1Q15459 AC013412.1-201ENST00000610687 192 ntBASIC3.27□□□□□ -1.89
SF3A1Q15459 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.27□□□□□ -1.89
SF3A1Q15459 AC245060.5-201ENST00000610778 3293 ntBASIC3.26□□□□□ -1.89
SF3A1Q15459 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
SF3A1Q15459 U3.8-201ENST00000363675 217 ntBASIC3.26□□□□□ -1.89
SF3A1Q15459 SNORA63C-201ENST00000364578 129 ntBASIC3.26□□□□□ -1.89
SF3A1Q15459 Y_RNA.332-201ENST00000365271 113 ntBASIC3.26□□□□□ -1.89
SF3A1Q15459 Y_RNA.439-201ENST00000384119 94 ntBASIC3.26□□□□□ -1.89
SF3A1Q15459 SNORD14D-201ENST00000384390 87 ntBASIC3.26□□□□□ -1.89
SF3A1Q15459 MRPL35P1-201ENST00000404272 572 ntBASIC3.26□□□□□ -1.89
SF3A1Q15459 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC3.26□□□□□ -1.89
SF3A1Q15459 MTND2P23-201ENST00000422990 651 ntBASIC3.26□□□□□ -1.89
SF3A1Q15459 AC139712.2-201ENST00000424302 339 ntBASIC3.26□□□□□ -1.89
SF3A1Q15459 RAB28P5-201ENST00000427490 651 ntBASIC3.26□□□□□ -1.89
SF3A1Q15459 RPL39P40-201ENST00000445481 146 ntBASIC3.26□□□□□ -1.89
SF3A1Q15459 AC016717.1-201ENST00000448918 286 ntBASIC3.26□□□□□ -1.89
SF3A1Q15459 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC3.26□□□□□ -1.89
SF3A1Q15459 RNU7-57P-201ENST00000459540 60 ntBASIC3.26□□□□□ -1.89
SF3A1Q15459 AC131281.1-201ENST00000522984 164 ntBASIC3.26□□□□□ -1.89
SF3A1Q15459 AC022080.3-201ENST00000544433 482 ntBASIC3.26□□□□□ -1.89
SF3A1Q15459 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC3.26□□□□□ -1.89
SF3A1Q15459 AC233702.2-202ENST00000562547 291 ntBASIC3.26□□□□□ -1.89
SF3A1Q15459 SNORD14A-201ENST00000606526 91 ntBASIC3.26□□□□□ -1.89
SF3A1Q15459 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC3.26□□□□□ -1.89
SF3A1Q15459 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
SF3A1Q15459 Y_RNA.99-201ENST00000363138 105 ntBASIC3.25□□□□□ -1.89
SF3A1Q15459 Y_RNA.145-201ENST00000363527 102 ntBASIC3.25□□□□□ -1.89
SF3A1Q15459 Y_RNA.152-201ENST00000363578 100 ntBASIC3.25□□□□□ -1.89
SF3A1Q15459 RNU6-418P-201ENST00000384035 107 ntBASIC3.25□□□□□ -1.89
SF3A1Q15459 RNU6-738P-201ENST00000384531 106 ntBASIC3.25□□□□□ -1.89
SF3A1Q15459 MIR548B-201ENST00000385247 97 ntBASIC3.25□□□□□ -1.89
SF3A1Q15459 AL590004.2-201ENST00000404787 371 ntBASIC3.25□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 103.6 ms