Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 MTCO1P5-201ENST00000433573 344 ntBASIC2.56□□□□□ -2
HOXA4Q00056 AC009237.7-201ENST00000447357 229 ntBASIC2.56□□□□□ -2
HOXA4Q00056 AC005042.3-201ENST00000453230 174 ntBASIC2.56□□□□□ -2
HOXA4Q00056 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC2.56□□□□□ -2
HOXA4Q00056 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.56□□□□□ -2
HOXA4Q00056 MIR449C-201ENST00000516047 92 ntBASIC2.56□□□□□ -2
HOXA4Q00056 RNU6-344P-201ENST00000516635 111 ntBASIC2.56□□□□□ -2
HOXA4Q00056 SCARNA11.3-201ENST00000517276 130 ntBASIC2.56□□□□□ -2
HOXA4Q00056 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC2.56□□□□□ -2
HOXA4Q00056 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.56□□□□□ -2
HOXA4Q00056 AC027176.1-201ENST00000560204 514 ntBASIC2.56□□□□□ -2
HOXA4Q00056 MIR3145-201ENST00000580727 82 ntBASIC2.56□□□□□ -2
HOXA4Q00056 AL670379.2-201ENST00000604983 252 ntBASIC2.56□□□□□ -2
HOXA4Q00056 AC037487.3-201ENST00000606668 112 ntBASIC2.56□□□□□ -2
HOXA4Q00056 SNORD11B-201ENST00000607707 90 ntBASIC2.56□□□□□ -2
HOXA4Q00056 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC2.56□□□□□ -2
HOXA4Q00056 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.56□□□□□ -2
HOXA4Q00056 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
HOXA4Q00056 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC2.55□□□□□ -2
HOXA4Q00056 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
HOXA4Q00056 MIR22-201ENST00000362190 85 ntBASIC2.55□□□□□ -2
HOXA4Q00056 MIR148B-201ENST00000362252 99 ntBASIC2.55□□□□□ -2
HOXA4Q00056 SNORA25.1-201ENST00000362326 128 ntBASIC2.55□□□□□ -2
HOXA4Q00056 RNU6-486P-201ENST00000363116 107 ntBASIC2.55□□□□□ -2
HOXA4Q00056 Y_RNA.122-201ENST00000363331 96 ntBASIC2.55□□□□□ -2
HOXA4Q00056 Y_RNA.136-201ENST00000363444 102 ntBASIC2.55□□□□□ -2
HOXA4Q00056 RNU6-1027P-201ENST00000383998 107 ntBASIC2.55□□□□□ -2
HOXA4Q00056 RNU6-1310P-201ENST00000384153 107 ntBASIC2.55□□□□□ -2
HOXA4Q00056 SNORA67.2-201ENST00000384300 149 ntBASIC2.55□□□□□ -2
HOXA4Q00056 MIR218-1-201ENST00000384999 110 ntBASIC2.55□□□□□ -2
HOXA4Q00056 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.55□□□□□ -2
HOXA4Q00056 RNA5SP293-201ENST00000410527 113 ntBASIC2.55□□□□□ -2
HOXA4Q00056 RPL32P35-201ENST00000415214 394 ntBASIC2.55□□□□□ -2
HOXA4Q00056 AC009963.1-201ENST00000417265 157 ntBASIC2.55□□□□□ -2
HOXA4Q00056 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC2.55□□□□□ -2
HOXA4Q00056 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.55□□□□□ -2
HOXA4Q00056 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC2.55□□□□□ -2
HOXA4Q00056 RPS29P26-201ENST00000477483 171 ntBASIC2.55□□□□□ -2
HOXA4Q00056 AC091959.1-201ENST00000495857 238 ntBASIC2.55□□□□□ -2
HOXA4Q00056 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC2.55□□□□□ -2
HOXA4Q00056 AC092593.1-201ENST00000515413 1815 ntBASIC2.55□□□□□ -2
HOXA4Q00056 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC2.55□□□□□ -2
HOXA4Q00056 RNU6-155P-201ENST00000516347 100 ntBASIC2.55□□□□□ -2
HOXA4Q00056 AC068657.1-201ENST00000520807 306 ntBASIC2.55□□□□□ -2
HOXA4Q00056 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.55□□□□□ -2
HOXA4Q00056 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.55□□□□□ -2
HOXA4Q00056 AL162274.2-201ENST00000614406 332 ntBASIC2.55□□□□□ -2
HOXA4Q00056 AC068205.3-201ENST00000636385 468 ntBASIC2.55□□□□□ -2
HOXA4Q00056 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.55□□□□□ -2
HOXA4Q00056 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.55□□□□□ -2
HOXA4Q00056 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC2.54□□□□□ -2
HOXA4Q00056 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC2.54□□□□□ -2
HOXA4Q00056 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.54□□□□□ -2
HOXA4Q00056 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC2.54□□□□□ -2
HOXA4Q00056 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
HOXA4Q00056 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC2.54□□□□□ -2
HOXA4Q00056 MIR422A-201ENST00000362286 90 ntBASIC2.54□□□□□ -2
HOXA4Q00056 Y_RNA.200-201ENST00000364018 102 ntBASIC2.54□□□□□ -2
HOXA4Q00056 Y_RNA.297-201ENST00000364950 91 ntBASIC2.54□□□□□ -2
HOXA4Q00056 SNORA48.5-201ENST00000391143 135 ntBASIC2.54□□□□□ -2
HOXA4Q00056 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC2.54□□□□□ -2
HOXA4Q00056 MIR1298-201ENST00000408783 112 ntBASIC2.54□□□□□ -2
HOXA4Q00056 RNU2-54P-201ENST00000410299 190 ntBASIC2.54□□□□□ -2
HOXA4Q00056 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC2.54□□□□□ -2
HOXA4Q00056 RPL30P4-201ENST00000429309 333 ntBASIC2.54□□□□□ -2
HOXA4Q00056 AC090515.1-201ENST00000465295 476 ntBASIC2.54□□□□□ -2
HOXA4Q00056 SNORA74D-201ENST00000516404 141 ntBASIC2.54□□□□□ -2
HOXA4Q00056 SNORA27.4-201ENST00000516650 95 ntBASIC2.54□□□□□ -2
HOXA4Q00056 RNU6-1098P-201ENST00000516772 96 ntBASIC2.54□□□□□ -2
HOXA4Q00056 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC2.54□□□□□ -2
HOXA4Q00056 AC023043.3-201ENST00000593113 385 ntBASIC2.54□□□□□ -2
HOXA4Q00056 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.54□□□□□ -2
HOXA4Q00056 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.54□□□□□ -2
HOXA4Q00056 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
HOXA4Q00056 AP003122.5-201ENST00000527668 3766 ntBASIC2.54□□□□□ -2
HOXA4Q00056 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
HOXA4Q00056 RNU6-944P-201ENST00000364023 107 ntBASIC2.53□□□□□ -2
HOXA4Q00056 Y_RNA.275-201ENST00000364726 110 ntBASIC2.53□□□□□ -2
HOXA4Q00056 RNU6-1264P-201ENST00000383891 107 ntBASIC2.53□□□□□ -2
HOXA4Q00056 RNU6-662P-201ENST00000384253 104 ntBASIC2.53□□□□□ -2
HOXA4Q00056 RNU6-1274P-201ENST00000384557 107 ntBASIC2.53□□□□□ -2
HOXA4Q00056 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC2.53□□□□□ -2
HOXA4Q00056 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC2.53□□□□□ -2
HOXA4Q00056 RN7SL75P-201ENST00000461926 281 ntBASIC2.53□□□□□ -2
HOXA4Q00056 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.53□□□□□ -2
HOXA4Q00056 SNORD116-28-201ENST00000516123 91 ntBASIC2.53□□□□□ -2
HOXA4Q00056 SNORA81.3-201ENST00000517283 198 ntBASIC2.53□□□□□ -2
HOXA4Q00056 AL162424.1-201ENST00000602325 221 ntBASIC2.53□□□□□ -2
HOXA4Q00056 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC2.53□□□□□ -2
HOXA4Q00056 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.53□□□□□ -2
HOXA4Q00056 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.53□□□□□ -2
HOXA4Q00056 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.53□□□□□ -2
HOXA4Q00056 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
HOXA4Q00056 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.53□□□□□ -2
HOXA4Q00056 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.53□□□□□ -2
HOXA4Q00056 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2.01
HOXA4Q00056 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
HOXA4Q00056 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
HOXA4Q00056 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
HOXA4Q00056 RNU4-80P-201ENST00000363200 141 ntBASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 103.4 ms