Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AP003355.3-201ENST00000623465 114 ntBASIC3.32□□□□□ -1.88
RNF4P78317 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC3.32□□□□□ -1.88
RNF4P78317 AC091564.4-201ENST00000533934 2194 ntBASIC3.32□□□□□ -1.88
RNF4P78317 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC3.32□□□□□ -1.88
RNF4P78317 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.32□□□□□ -1.88
RNF4P78317 ADGRL4-201ENST00000370742 3527 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
RNF4P78317 GABRG2-229ENST00000641017 3628 ntBASIC3.32□□□□□ -1.88
RNF4P78317 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
RNF4P78317 AC093274.1-201ENST00000503488 5454 ntTSL 5 BASIC3.31□□□□□ -1.88
RNF4P78317 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
RNF4P78317 5S_rRNA.1-201ENST00000364415 116 ntBASIC3.31□□□□□ -1.88
RNF4P78317 RNU6-312P-201ENST00000364629 107 ntBASIC3.31□□□□□ -1.88
RNF4P78317 Y_RNA.310-201ENST00000365063 113 ntBASIC3.31□□□□□ -1.88
RNF4P78317 SNORD50.2-201ENST00000365465 70 ntBASIC3.31□□□□□ -1.88
RNF4P78317 Y_RNA.357-201ENST00000365487 109 ntBASIC3.31□□□□□ -1.88
RNF4P78317 Y_RNA.361-201ENST00000365515 120 ntBASIC3.31□□□□□ -1.88
RNF4P78317 SNORD14D-201ENST00000384390 87 ntBASIC3.31□□□□□ -1.88
RNF4P78317 Y_RNA.580-201ENST00000391004 95 ntBASIC3.31□□□□□ -1.88
RNF4P78317 SNORA70.18-201ENST00000516696 98 ntBASIC3.31□□□□□ -1.88
RNF4P78317 RNU6-579P-201ENST00000516879 102 ntBASIC3.31□□□□□ -1.88
RNF4P78317 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.31□□□□□ -1.88
RNF4P78317 AC008739.3-201ENST00000603262 127 ntBASIC3.31□□□□□ -1.88
RNF4P78317 RPL17P51-201ENST00000605218 238 ntBASIC3.31□□□□□ -1.88
RNF4P78317 AC025754.2-201ENST00000606491 432 ntBASIC3.31□□□□□ -1.88
RNF4P78317 MIR7851-201ENST00000610611 160 ntBASIC3.31□□□□□ -1.88
RNF4P78317 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.31□□□□□ -1.88
RNF4P78317 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.3□□□□□ -1.88
RNF4P78317 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
RNF4P78317 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
RNF4P78317 Y_RNA.24-201ENST00000362508 103 ntBASIC3.3□□□□□ -1.88
RNF4P78317 RNU1-18P-201ENST00000363062 164 ntBASIC3.3□□□□□ -1.88
RNF4P78317 RNU6-486P-201ENST00000363116 107 ntBASIC3.3□□□□□ -1.88
RNF4P78317 Y_RNA.172-201ENST00000363765 102 ntBASIC3.3□□□□□ -1.88
RNF4P78317 RNU6-899P-201ENST00000363947 107 ntBASIC3.3□□□□□ -1.88
RNF4P78317 RNU4-84P-201ENST00000364200 139 ntBASIC3.3□□□□□ -1.88
RNF4P78317 RNU6-818P-201ENST00000364837 108 ntBASIC3.3□□□□□ -1.88
RNF4P78317 RNU6-275P-201ENST00000364910 107 ntBASIC3.3□□□□□ -1.88
RNF4P78317 SNORA8.3-201ENST00000384679 139 ntBASIC3.3□□□□□ -1.88
RNF4P78317 SNORA48.5-201ENST00000391143 135 ntBASIC3.3□□□□□ -1.88
RNF4P78317 MIR1185-2-201ENST00000408687 86 ntBASIC3.3□□□□□ -1.88
RNF4P78317 BMS1P22-201ENST00000414726 313 ntBASIC3.3□□□□□ -1.88
RNF4P78317 RNU7-141P-201ENST00000459304 62 ntBASIC3.3□□□□□ -1.88
RNF4P78317 AC006483.1-201ENST00000487308 313 ntBASIC3.3□□□□□ -1.88
RNF4P78317 AC110768.1-201ENST00000509222 400 ntBASIC3.3□□□□□ -1.88
RNF4P78317 RN7SKP164-201ENST00000516138 266 ntBASIC3.3□□□□□ -1.88
RNF4P78317 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC3.3□□□□□ -1.88
RNF4P78317 MIR3922-201ENST00000585192 84 ntBASIC3.3□□□□□ -1.88
RNF4P78317 U3.45-201ENST00000607547 219 ntBASIC3.3□□□□□ -1.88
RNF4P78317 MIR92B-201ENST00000607575 96 ntBASIC3.3□□□□□ -1.88
RNF4P78317 RNVU1-4-201ENST00000612985 164 ntBASIC3.3□□□□□ -1.88
RNF4P78317 MIR6075-201ENST00000620782 95 ntBASIC3.3□□□□□ -1.88
RNF4P78317 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.3□□□□□ -1.88
RNF4P78317 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
RNF4P78317 C5orf42-205ENST00000508244 11062 ntAPPRIS P2 TSL 5 BASIC3.3□□□□□ -1.88
RNF4P78317 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
RNF4P78317 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
RNF4P78317 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.29□□□□□ -1.88
RNF4P78317 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.29□□□□□ -1.88
RNF4P78317 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC3.29□□□□□ -1.88
RNF4P78317 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
RNF4P78317 RNA5SP119-201ENST00000362715 117 ntBASIC3.29□□□□□ -1.88
RNF4P78317 RNU1-72P-201ENST00000362976 153 ntBASIC3.29□□□□□ -1.88
RNF4P78317 RNA5SP42-201ENST00000364278 115 ntBASIC3.29□□□□□ -1.88
RNF4P78317 Y_RNA.456-201ENST00000384232 111 ntBASIC3.29□□□□□ -1.88
RNF4P78317 MIR184-201ENST00000384962 84 ntBASIC3.29□□□□□ -1.88
RNF4P78317 MIR1283-1-201ENST00000408494 87 ntBASIC3.29□□□□□ -1.88
RNF4P78317 MIR1294-201ENST00000408503 142 ntBASIC3.29□□□□□ -1.88
RNF4P78317 DBIP2-201ENST00000419076 262 ntBASIC3.29□□□□□ -1.88
RNF4P78317 AC006989.1-201ENST00000427212 131 ntBASIC3.29□□□□□ -1.88
RNF4P78317 SNORA70.12-201ENST00000516084 153 ntBASIC3.29□□□□□ -1.88
RNF4P78317 AC090616.3-201ENST00000582184 217 ntBASIC3.29□□□□□ -1.88
RNF4P78317 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.29□□□□□ -1.88
RNF4P78317 Y_RNA.802-201ENST00000614892 130 ntBASIC3.29□□□□□ -1.88
RNF4P78317 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
RNF4P78317 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
RNF4P78317 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.29□□□□□ -1.88
RNF4P78317 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
RNF4P78317 AL049781.1-201ENST00000623195 3585 ntBASIC3.28□□□□□ -1.88
RNF4P78317 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
RNF4P78317 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
RNF4P78317 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
RNF4P78317 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
RNF4P78317 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
RNF4P78317 CEP170P1-201ENST00000502249 4587 ntBASIC3.28□□□□□ -1.88
RNF4P78317 SNORA71.3-201ENST00000362582 128 ntBASIC3.28□□□□□ -1.88
RNF4P78317 RNU6-1205P-201ENST00000363625 106 ntBASIC3.28□□□□□ -1.88
RNF4P78317 RNU6-969P-201ENST00000383900 105 ntBASIC3.28□□□□□ -1.88
RNF4P78317 MIR626-201ENST00000385032 94 ntBASIC3.28□□□□□ -1.88
RNF4P78317 RNA5SP171-201ENST00000391071 115 ntBASIC3.28□□□□□ -1.88
RNF4P78317 RNU1-101P-201ENST00000391171 127 ntBASIC3.28□□□□□ -1.88
RNF4P78317 AL355497.1-201ENST00000406262 551 ntBASIC3.28□□□□□ -1.88
RNF4P78317 RNU7-57P-201ENST00000459540 60 ntBASIC3.28□□□□□ -1.88
RNF4P78317 AC083906.5-201ENST00000503722 328 ntBASIC3.28□□□□□ -1.88
RNF4P78317 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.28□□□□□ -1.88
RNF4P78317 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.28□□□□□ -1.88
RNF4P78317 ATP5EP1-201ENST00000510257 156 ntBASIC3.28□□□□□ -1.88
RNF4P78317 SNORD116-25-201ENST00000516517 92 ntBASIC3.28□□□□□ -1.88
RNF4P78317 RNU6-1007P-201ENST00000516586 107 ntBASIC3.28□□□□□ -1.88
RNF4P78317 RNU6-453P-201ENST00000516819 85 ntBASIC3.28□□□□□ -1.88
RNF4P78317 SNORD59.2-201ENST00000516873 68 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms