Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 MTCO3P8-201ENST00000453691 755 ntBASIC1.96□□□□□ -2.1
LHX1P48742 AC016925.1-201ENST00000458303 298 ntBASIC1.96□□□□□ -2.1
LHX1P48742 RN7SKP210-201ENST00000459176 261 ntBASIC1.96□□□□□ -2.1
LHX1P48742 MTND4P17-201ENST00000470444 350 ntBASIC1.96□□□□□ -2.1
LHX1P48742 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.96□□□□□ -2.1
LHX1P48742 RPL30P10-201ENST00000488148 337 ntBASIC1.96□□□□□ -2.1
LHX1P48742 RNU7-175P-201ENST00000515915 61 ntBASIC1.96□□□□□ -2.1
LHX1P48742 Y_RNA.670-201ENST00000516255 105 ntBASIC1.96□□□□□ -2.1
LHX1P48742 RNU6-1198P-201ENST00000516904 67 ntBASIC1.96□□□□□ -2.1
LHX1P48742 AP005660.1-201ENST00000522972 293 ntBASIC1.96□□□□□ -2.1
LHX1P48742 AC005730.3-201ENST00000583067 366 ntBASIC1.96□□□□□ -2.1
LHX1P48742 AC009229.3-201ENST00000608056 282 ntBASIC1.96□□□□□ -2.1
LHX1P48742 AL355073.2-201ENST00000612106 557 ntBASIC1.96□□□□□ -2.1
LHX1P48742 PISRT1.1-201ENST00000616930 107 ntBASIC1.96□□□□□ -2.1
LHX1P48742 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC1.96□□□□□ -2.1
LHX1P48742 BX322639.1-202ENST00000423987 2213 ntBASIC1.96□□□□□ -2.1
LHX1P48742 KPNA2P1-201ENST00000458289 1591 ntBASIC1.96□□□□□ -2.1
LHX1P48742 LINC02555-201ENST00000563933 1951 ntBASIC1.96□□□□□ -2.1
LHX1P48742 AC009487.4-201ENST00000624969 3585 ntBASIC1.95□□□□□ -2.1
LHX1P48742 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.95□□□□□ -2.1
LHX1P48742 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.95□□□□□ -2.1
LHX1P48742 RNU6-23P-201ENST00000363283 107 ntBASIC1.95□□□□□ -2.1
LHX1P48742 RNU6-541P-201ENST00000384709 110 ntBASIC1.95□□□□□ -2.1
LHX1P48742 SNORA12.2-201ENST00000391040 156 ntBASIC1.95□□□□□ -2.1
LHX1P48742 RNU11-3P-201ENST00000391111 133 ntBASIC1.95□□□□□ -2.1
LHX1P48742 AL356432.1-201ENST00000405809 419 ntBASIC1.95□□□□□ -2.1
LHX1P48742 MIR1283-2-201ENST00000408621 87 ntBASIC1.95□□□□□ -2.1
LHX1P48742 AC009237.7-201ENST00000447357 229 ntBASIC1.95□□□□□ -2.1
LHX1P48742 Y_RNA.635-201ENST00000459041 101 ntBASIC1.95□□□□□ -2.1
LHX1P48742 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.95□□□□□ -2.1
LHX1P48742 CBX3P8-201ENST00000532412 525 ntBASIC1.95□□□□□ -2.1
LHX1P48742 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC1.95□□□□□ -2.1
LHX1P48742 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.95□□□□□ -2.1
LHX1P48742 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.95□□□□□ -2.1
LHX1P48742 AL359697.1-201ENST00000624879 587 ntBASIC1.95□□□□□ -2.1
LHX1P48742 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.95□□□□□ -2.1
LHX1P48742 MTND4P12-201ENST00000498999 1377 ntBASIC1.95□□□□□ -2.1
LHX1P48742 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.95□□□□□ -2.1
LHX1P48742 AL359851.1-201ENST00000569460 4997 ntBASIC1.95□□□□□ -2.1
LHX1P48742 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.94□□□□□ -2.1
LHX1P48742 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
LHX1P48742 RNU6-545P-201ENST00000362681 104 ntBASIC1.94□□□□□ -2.1
LHX1P48742 SNORA72.1-201ENST00000363485 129 ntBASIC1.94□□□□□ -2.1
LHX1P48742 SNORD115-8-201ENST00000363856 82 ntBASIC1.94□□□□□ -2.1
LHX1P48742 SNORD115-38-201ENST00000365037 82 ntBASIC1.94□□□□□ -2.1
LHX1P48742 RNA5SP138-201ENST00000365098 114 ntBASIC1.94□□□□□ -2.1
LHX1P48742 MIR597-201ENST00000384968 97 ntBASIC1.94□□□□□ -2.1
LHX1P48742 MIR9-3-201ENST00000385084 90 ntBASIC1.94□□□□□ -2.1
LHX1P48742 MIR300-201ENST00000401138 83 ntBASIC1.94□□□□□ -2.1
LHX1P48742 AC003989.2-201ENST00000440224 169 ntBASIC1.94□□□□□ -2.1
LHX1P48742 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.94□□□□□ -2.1
LHX1P48742 RPL7P42-201ENST00000481005 679 ntBASIC1.94□□□□□ -2.1
LHX1P48742 RNU6-548P-201ENST00000517083 115 ntBASIC1.94□□□□□ -2.1
LHX1P48742 AC087441.2-201ENST00000529141 262 ntBASIC1.94□□□□□ -2.1
LHX1P48742 AC015712.3-201ENST00000559380 164 ntBASIC1.94□□□□□ -2.1
LHX1P48742 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.94□□□□□ -2.1
LHX1P48742 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.94□□□□□ -2.1
LHX1P48742 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.94□□□□□ -2.1
LHX1P48742 AL590240.4-201ENST00000616908 390 ntBASIC1.94□□□□□ -2.1
LHX1P48742 AC098657.3-201ENST00000620434 263 ntBASIC1.94□□□□□ -2.1
LHX1P48742 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.94□□□□□ -2.1
LHX1P48742 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.94□□□□□ -2.1
LHX1P48742 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.93□□□□□ -2.1
LHX1P48742 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.93□□□□□ -2.1
LHX1P48742 Y_RNA.132-201ENST00000363421 102 ntBASIC1.93□□□□□ -2.1
LHX1P48742 RNA5SP493-201ENST00000364115 91 ntBASIC1.93□□□□□ -2.1
LHX1P48742 SNORA16.1-201ENST00000364597 132 ntBASIC1.93□□□□□ -2.1
LHX1P48742 Y_RNA.405-201ENST00000383979 100 ntBASIC1.93□□□□□ -2.1
LHX1P48742 Y_RNA.451-201ENST00000384200 100 ntBASIC1.93□□□□□ -2.1
LHX1P48742 RNU6-17P-201ENST00000384245 107 ntBASIC1.93□□□□□ -2.1
LHX1P48742 RNU6-18P-201ENST00000384527 107 ntBASIC1.93□□□□□ -2.1
LHX1P48742 Y_RNA.524-201ENST00000384564 100 ntBASIC1.93□□□□□ -2.1
LHX1P48742 Y_RNA.561-201ENST00000384694 100 ntBASIC1.93□□□□□ -2.1
LHX1P48742 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
LHX1P48742 RNA5SP338-201ENST00000410495 85 ntBASIC1.93□□□□□ -2.1
LHX1P48742 RNU2-40P-201ENST00000410833 196 ntBASIC1.93□□□□□ -2.1
LHX1P48742 AC139712.2-201ENST00000424302 339 ntBASIC1.93□□□□□ -2.1
LHX1P48742 USMG5P1-201ENST00000425964 177 ntBASIC1.93□□□□□ -2.1
LHX1P48742 AC007395.1-201ENST00000451333 677 ntBASIC1.93□□□□□ -2.1
LHX1P48742 RPL23AP63-201ENST00000498752 471 ntBASIC1.93□□□□□ -2.1
LHX1P48742 RNU4ATAC7P-201ENST00000516280 125 ntBASIC1.93□□□□□ -2.1
LHX1P48742 RNU6-58P-201ENST00000517143 103 ntBASIC1.93□□□□□ -2.1
LHX1P48742 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.93□□□□□ -2.1
LHX1P48742 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.93□□□□□ -2.1
LHX1P48742 AC027288.2-201ENST00000553028 243 ntBASIC1.93□□□□□ -2.1
LHX1P48742 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.93□□□□□ -2.1
LHX1P48742 AC104581.2-201ENST00000572227 430 ntBASIC1.93□□□□□ -2.1
LHX1P48742 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC1.93□□□□□ -2.1
LHX1P48742 MIR4524B-201ENST00000581569 115 ntBASIC1.93□□□□□ -2.1
LHX1P48742 UBE2V2P2-201ENST00000587677 504 ntBASIC1.93□□□□□ -2.1
LHX1P48742 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC1.93□□□□□ -2.1
LHX1P48742 AL359757.2-201ENST00000624309 274 ntBASIC1.93□□□□□ -2.1
LHX1P48742 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.93□□□□□ -2.1
LHX1P48742 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.92□□□□□ -2.1
LHX1P48742 SNORD114-6-201ENST00000364393 72 ntBASIC1.92□□□□□ -2.1
LHX1P48742 MIR764-201ENST00000390811 85 ntBASIC1.92□□□□□ -2.1
LHX1P48742 SNORA75.4-201ENST00000391278 119 ntBASIC1.92□□□□□ -2.1
LHX1P48742 MIR1283-1-201ENST00000408494 87 ntBASIC1.92□□□□□ -2.1
LHX1P48742 AC004866.1-201ENST00000411748 78 ntBASIC1.92□□□□□ -2.1
LHX1P48742 MTCO3P29-201ENST00000432119 779 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 126.2 ms