Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 MIR190B-201ENST00000401119 79 ntBASIC1.91□□□□□ -2.1
SOX3P41225 MTND3P23-201ENST00000431980 347 ntBASIC1.91□□□□□ -2.1
SOX3P41225 MTCO3P29-201ENST00000432119 779 ntBASIC1.91□□□□□ -2.1
SOX3P41225 IPO7P1-201ENST00000442031 636 ntBASIC1.91□□□□□ -2.1
SOX3P41225 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC1.91□□□□□ -2.1
SOX3P41225 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.91□□□□□ -2.1
SOX3P41225 snoU13.15-201ENST00000459407 104 ntBASIC1.91□□□□□ -2.1
SOX3P41225 SNORA4.4-201ENST00000515921 135 ntBASIC1.91□□□□□ -2.1
SOX3P41225 RNU6-470P-201ENST00000515954 104 ntBASIC1.91□□□□□ -2.1
SOX3P41225 RNU6-264P-201ENST00000517134 104 ntBASIC1.91□□□□□ -2.1
SOX3P41225 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC1.91□□□□□ -2.1
SOX3P41225 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC1.91□□□□□ -2.1
SOX3P41225 DEFB131C-201ENST00000528817 165 ntBASIC1.91□□□□□ -2.1
SOX3P41225 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.91□□□□□ -2.1
SOX3P41225 AC027288.2-201ENST00000553028 243 ntBASIC1.91□□□□□ -2.1
SOX3P41225 AC233702.2-202ENST00000562547 291 ntBASIC1.91□□□□□ -2.1
SOX3P41225 AC009127.3-201ENST00000570531 403 ntBASIC1.91□□□□□ -2.1
SOX3P41225 SNRPGP17-201ENST00000603780 214 ntBASIC1.91□□□□□ -2.1
SOX3P41225 AL355802.3-201ENST00000607571 545 ntBASIC1.91□□□□□ -2.1
SOX3P41225 TCL6_2.1-201ENST00000615162 119 ntBASIC1.91□□□□□ -2.1
SOX3P41225 AC126177.8-201ENST00000618339 1015 ntBASIC1.91□□□□□ -2.1
SOX3P41225 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.91□□□□□ -2.1
SOX3P41225 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.91□□□□□ -2.1
SOX3P41225 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
SOX3P41225 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC1.9□□□□□ -2.1
SOX3P41225 SNORD114-1-201ENST00000362705 72 ntBASIC1.9□□□□□ -2.11
SOX3P41225 Y_RNA.319-201ENST00000365138 92 ntBASIC1.9□□□□□ -2.11
SOX3P41225 SNORA18.2-201ENST00000383865 132 ntBASIC1.9□□□□□ -2.11
SOX3P41225 AL078595.1-201ENST00000404458 226 ntBASIC1.9□□□□□ -2.11
SOX3P41225 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.9□□□□□ -2.11
SOX3P41225 AC027124.2-201ENST00000428249 105 ntBASIC1.9□□□□□ -2.11
SOX3P41225 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
SOX3P41225 HMGN2P18-201ENST00000450680 270 ntBASIC1.9□□□□□ -2.11
SOX3P41225 TOMM22P6-201ENST00000465035 409 ntBASIC1.9□□□□□ -2.11
SOX3P41225 RPS23P5-201ENST00000495419 428 ntBASIC1.9□□□□□ -2.11
SOX3P41225 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC1.9□□□□□ -2.11
SOX3P41225 AC022493.2-201ENST00000506122 481 ntBASIC1.9□□□□□ -2.11
SOX3P41225 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.9□□□□□ -2.11
SOX3P41225 RNU6-1098P-201ENST00000516772 96 ntBASIC1.9□□□□□ -2.11
SOX3P41225 RNU2-44P-201ENST00000516795 194 ntBASIC1.9□□□□□ -2.11
SOX3P41225 Y_RNA.706-201ENST00000516933 99 ntBASIC1.9□□□□□ -2.11
SOX3P41225 RNA5SP364-201ENST00000516938 78 ntBASIC1.9□□□□□ -2.11
SOX3P41225 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC1.9□□□□□ -2.11
SOX3P41225 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.9□□□□□ -2.11
SOX3P41225 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
SOX3P41225 SNRPGP20-201ENST00000604477 205 ntBASIC1.9□□□□□ -2.11
SOX3P41225 Y_RNA.783-201ENST00000613546 102 ntBASIC1.9□□□□□ -2.11
SOX3P41225 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.9□□□□□ -2.11
SOX3P41225 AC005562.2-201ENST00000618264 111 ntBASIC1.9□□□□□ -2.11
SOX3P41225 MTND4P29-201ENST00000503122 1372 ntBASIC1.89□□□□□ -2.11
SOX3P41225 SNORA6-201ENST00000384033 151 ntBASIC1.89□□□□□ -2.11
SOX3P41225 Y_RNA.535-201ENST00000384612 99 ntBASIC1.89□□□□□ -2.11
SOX3P41225 RNU6-541P-201ENST00000384709 110 ntBASIC1.89□□□□□ -2.11
SOX3P41225 MIR549A-201ENST00000385268 96 ntBASIC1.89□□□□□ -2.11
SOX3P41225 RNU6-159P-201ENST00000391080 106 ntBASIC1.89□□□□□ -2.11
SOX3P41225 AL139156.1-201ENST00000412785 841 ntBASIC1.89□□□□□ -2.11
SOX3P41225 SRIP3-201ENST00000413200 219 ntBASIC1.89□□□□□ -2.11
SOX3P41225 EDDM3CP-201ENST00000415977 425 ntBASIC1.89□□□□□ -2.11
SOX3P41225 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.89□□□□□ -2.11
SOX3P41225 AL445646.1-201ENST00000431784 216 ntBASIC1.89□□□□□ -2.11
SOX3P41225 AC004386.2-201ENST00000441858 148 ntBASIC1.89□□□□□ -2.11
SOX3P41225 MTCO3P8-201ENST00000453691 755 ntBASIC1.89□□□□□ -2.11
SOX3P41225 PRELID3BP1-201ENST00000457142 540 ntBASIC1.89□□□□□ -2.11
SOX3P41225 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.89□□□□□ -2.11
SOX3P41225 RNU5F-4P-201ENST00000516581 114 ntBASIC1.89□□□□□ -2.11
SOX3P41225 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.89□□□□□ -2.11
SOX3P41225 MIR3126-201ENST00000577443 74 ntBASIC1.89□□□□□ -2.11
SOX3P41225 SNORD14A-201ENST00000606526 91 ntBASIC1.89□□□□□ -2.11
SOX3P41225 AL050343.2-201ENST00000607338 280 ntBASIC1.89□□□□□ -2.11
SOX3P41225 AC022140.2-201ENST00000623500 188 ntBASIC1.89□□□□□ -2.11
SOX3P41225 ZNF204P-201ENST00000416749 2397 ntBASIC1.89□□□□□ -2.11
SOX3P41225 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SOX3P41225 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
SOX3P41225 MTND5P10-201ENST00000603719 1809 ntBASIC1.89□□□□□ -2.11
SOX3P41225 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.89□□□□□ -2.11
SOX3P41225 Y_RNA.106-201ENST00000363189 100 ntBASIC1.88□□□□□ -2.11
SOX3P41225 RNU6-743P-201ENST00000364151 106 ntBASIC1.88□□□□□ -2.11
SOX3P41225 Y_RNA.813-201ENST00000364639 102 ntBASIC1.88□□□□□ -2.11
SOX3P41225 RNU6-99P-201ENST00000364721 107 ntBASIC1.88□□□□□ -2.11
SOX3P41225 RNU6-245P-201ENST00000384020 107 ntBASIC1.88□□□□□ -2.11
SOX3P41225 Y_RNA.577-201ENST00000384794 101 ntBASIC1.88□□□□□ -2.11
SOX3P41225 AL357139.1-201ENST00000407792 426 ntBASIC1.88□□□□□ -2.11
SOX3P41225 MIR320B2-201ENST00000408479 138 ntBASIC1.88□□□□□ -2.11
SOX3P41225 U3.40-201ENST00000408706 208 ntBASIC1.88□□□□□ -2.11
SOX3P41225 RNU2-2P-201ENST00000410396 191 ntBASIC1.88□□□□□ -2.11
SOX3P41225 AC007098.1-201ENST00000420122 367 ntBASIC1.88□□□□□ -2.11
SOX3P41225 AL137159.1-201ENST00000452808 512 ntBASIC1.88□□□□□ -2.11
SOX3P41225 RNU7-14P-201ENST00000459331 62 ntBASIC1.88□□□□□ -2.11
SOX3P41225 AC093259.1-201ENST00000509755 300 ntBASIC1.88□□□□□ -2.11
SOX3P41225 ATP5EP1-201ENST00000510257 156 ntBASIC1.88□□□□□ -2.11
SOX3P41225 RNA5SP137-201ENST00000516833 135 ntBASIC1.88□□□□□ -2.11
SOX3P41225 AC004584.2-201ENST00000570407 410 ntBASIC1.88□□□□□ -2.11
SOX3P41225 AC026271.5-201ENST00000577873 130 ntBASIC1.88□□□□□ -2.11
SOX3P41225 MIR3935-201ENST00000583472 104 ntBASIC1.88□□□□□ -2.11
SOX3P41225 U2.15-201ENST00000611544 191 ntBASIC1.88□□□□□ -2.11
SOX3P41225 U2.16-201ENST00000613119 191 ntBASIC1.88□□□□□ -2.11
SOX3P41225 AC022202.1-201ENST00000613515 211 ntBASIC1.88□□□□□ -2.11
SOX3P41225 U2.12-201ENST00000613778 191 ntBASIC1.88□□□□□ -2.11
SOX3P41225 U2.20-201ENST00000613956 192 ntBASIC1.88□□□□□ -2.11
SOX3P41225 U2.9-201ENST00000615427 191 ntBASIC1.88□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms