Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 Y_RNA.415-201ENST00000384012 112 ntBASIC2.32□□□□□ -2.04
HOXD3P31249 RNU6-245P-201ENST00000384020 107 ntBASIC2.32□□□□□ -2.04
HOXD3P31249 SNORD63-201ENST00000384262 68 ntBASIC2.32□□□□□ -2.04
HOXD3P31249 RNU6-301P-201ENST00000384277 107 ntBASIC2.32□□□□□ -2.04
HOXD3P31249 RNA5SP274-201ENST00000410484 108 ntBASIC2.32□□□□□ -2.04
HOXD3P31249 RPL19P1-201ENST00000411635 428 ntBASIC2.32□□□□□ -2.04
HOXD3P31249 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.32□□□□□ -2.04
HOXD3P31249 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.32□□□□□ -2.04
HOXD3P31249 IFNA11P-201ENST00000446352 526 ntBASIC2.32□□□□□ -2.04
HOXD3P31249 UQCRBP2-201ENST00000447827 297 ntBASIC2.32□□□□□ -2.04
HOXD3P31249 AC007395.1-201ENST00000451333 677 ntBASIC2.32□□□□□ -2.04
HOXD3P31249 RPL23AP3-201ENST00000453844 468 ntBASIC2.32□□□□□ -2.04
HOXD3P31249 RPS29P26-201ENST00000477483 171 ntBASIC2.32□□□□□ -2.04
HOXD3P31249 RNA5SP356-201ENST00000515972 94 ntBASIC2.32□□□□□ -2.04
HOXD3P31249 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.32□□□□□ -2.04
HOXD3P31249 RNU6-496P-201ENST00000516145 99 ntBASIC2.32□□□□□ -2.04
HOXD3P31249 RNU6-1338P-201ENST00000516328 91 ntBASIC2.32□□□□□ -2.04
HOXD3P31249 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.32□□□□□ -2.04
HOXD3P31249 AP002001.1-203ENST00000534002 267 ntBASIC2.32□□□□□ -2.04
HOXD3P31249 AC018448.1-201ENST00000552843 316 ntBASIC2.32□□□□□ -2.04
HOXD3P31249 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.32□□□□□ -2.04
HOXD3P31249 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.32□□□□□ -2.04
HOXD3P31249 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.32□□□□□ -2.04
HOXD3P31249 AL713866.2-201ENST00000603579 219 ntBASIC2.32□□□□□ -2.04
HOXD3P31249 AC005562.2-201ENST00000618264 111 ntBASIC2.32□□□□□ -2.04
HOXD3P31249 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.32□□□□□ -2.04
HOXD3P31249 MAPK10-266ENST00000641066 6555 ntBASIC2.31□□□□□ -2.04
HOXD3P31249 AL391987.6-201ENST00000305671 199 ntBASIC2.31□□□□□ -2.04
HOXD3P31249 RNU6-486P-201ENST00000363116 107 ntBASIC2.31□□□□□ -2.04
HOXD3P31249 SNORA68.1-201ENST00000364537 132 ntBASIC2.31□□□□□ -2.04
HOXD3P31249 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
HOXD3P31249 SNORA18.3-201ENST00000384122 132 ntBASIC2.31□□□□□ -2.04
HOXD3P31249 Y_RNA.498-201ENST00000384460 102 ntBASIC2.31□□□□□ -2.04
HOXD3P31249 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC2.31□□□□□ -2.04
HOXD3P31249 Y_RNA.581-201ENST00000391017 97 ntBASIC2.31□□□□□ -2.04
HOXD3P31249 RNA5SP293-201ENST00000410527 113 ntBASIC2.31□□□□□ -2.04
HOXD3P31249 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.31□□□□□ -2.04
HOXD3P31249 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC2.31□□□□□ -2.04
HOXD3P31249 AC092427.1-202ENST00000430569 476 ntBASIC2.31□□□□□ -2.04
HOXD3P31249 MTND4LP30-201ENST00000454092 297 ntBASIC2.31□□□□□ -2.04
HOXD3P31249 RN7SL20P-201ENST00000488827 297 ntBASIC2.31□□□□□ -2.04
HOXD3P31249 SCGB1D5P-201ENST00000515134 247 ntBASIC2.31□□□□□ -2.04
HOXD3P31249 RPPH1-2P-201ENST00000516688 293 ntBASIC2.31□□□□□ -2.04
HOXD3P31249 RNU7-110P-201ENST00000516891 62 ntBASIC2.31□□□□□ -2.04
HOXD3P31249 RNU1-117P-201ENST00000517041 158 ntBASIC2.31□□□□□ -2.04
HOXD3P31249 RN7SKP40-201ENST00000517211 242 ntBASIC2.31□□□□□ -2.04
HOXD3P31249 AC068657.1-201ENST00000520807 306 ntBASIC2.31□□□□□ -2.04
HOXD3P31249 AC007536.1-201ENST00000533382 349 ntBASIC2.31□□□□□ -2.04
HOXD3P31249 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC2.31□□□□□ -2.04
HOXD3P31249 AK6P2-201ENST00000549020 471 ntBASIC2.31□□□□□ -2.04
HOXD3P31249 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.31□□□□□ -2.04
HOXD3P31249 AC005357.1-201ENST00000588399 301 ntBASIC2.31□□□□□ -2.04
HOXD3P31249 AL670379.2-201ENST00000604983 252 ntBASIC2.31□□□□□ -2.04
HOXD3P31249 TCL6_2.1-201ENST00000615162 119 ntBASIC2.31□□□□□ -2.04
HOXD3P31249 AC078938.1-201ENST00000620993 318 ntBASIC2.31□□□□□ -2.04
HOXD3P31249 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.31□□□□□ -2.04
HOXD3P31249 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.31□□□□□ -2.04
HOXD3P31249 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
HOXD3P31249 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC2.31□□□□□ -2.04
HOXD3P31249 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
HOXD3P31249 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.3□□□□□ -2.04
HOXD3P31249 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.3□□□□□ -2.04
HOXD3P31249 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.3□□□□□ -2.04
HOXD3P31249 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC2.3□□□□□ -2.04
HOXD3P31249 AC073325.2-201ENST00000339545 159 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 MIR148B-201ENST00000362252 99 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 Y_RNA.101-201ENST00000363154 102 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 RNA5SP126-201ENST00000365092 109 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 RNU6-1175P-201ENST00000365200 107 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 RNU1-109P-201ENST00000383960 147 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 RNU6-1274P-201ENST00000384557 107 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 Y_RNA.562-201ENST00000384695 113 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 Y_RNA.570-201ENST00000384750 101 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
HOXD3P31249 RNU6-907P-201ENST00000390924 102 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 SNORA26.7-201ENST00000391288 122 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 RNA5SP504-201ENST00000410676 117 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC2.3□□□□□ -2.04
HOXD3P31249 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC2.3□□□□□ -2.04
HOXD3P31249 AC096920.1-201ENST00000423991 241 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.3□□□□□ -2.04
HOXD3P31249 RNU6-625P-201ENST00000459412 107 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 AC117440.1-201ENST00000474107 571 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 RN7SL429P-201ENST00000479090 223 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 RN7SL489P-201ENST00000486185 223 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 RN7SL327P-201ENST00000488659 223 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.3□□□□□ -2.04
HOXD3P31249 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.3□□□□□ -2.04
HOXD3P31249 AC233702.2-202ENST00000562547 291 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 MIR4423-201ENST00000580922 80 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 AL356575.1-201ENST00000603008 283 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 RN7SL853P-201ENST00000617250 223 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.3□□□□□ -2.04
HOXD3P31249 AC080128.1-201ENST00000474389 1917 ntBASIC2.3□□□□□ -2.04
HOXD3P31249 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.3□□□□□ -2.04
HOXD3P31249 AL035425.3-201ENST00000564206 4996 ntBASIC2.29□□□□□ -2.04
HOXD3P31249 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.29□□□□□ -2.04
HOXD3P31249 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 128.7 ms