Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.65□□□□□ -1.99
HOXD9P28356 RNU6-496P-201ENST00000516145 99 ntBASIC2.65□□□□□ -1.99
HOXD9P28356 SCARNA11.3-201ENST00000517276 130 ntBASIC2.65□□□□□ -1.99
HOXD9P28356 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC2.65□□□□□ -1.99
HOXD9P28356 AC011476.5-201ENST00000615594 130 ntBASIC2.65□□□□□ -1.99
HOXD9P28356 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
HOXD9P28356 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.64□□□□□ -1.99
HOXD9P28356 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.64□□□□□ -1.99
HOXD9P28356 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.64□□□□□ -1.99
HOXD9P28356 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
HOXD9P28356 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
HOXD9P28356 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
HOXD9P28356 RNA5SP361-201ENST00000362686 118 ntBASIC2.64□□□□□ -1.99
HOXD9P28356 SNORD113-8-201ENST00000363497 74 ntBASIC2.64□□□□□ -1.99
HOXD9P28356 Y_RNA.352-201ENST00000365439 102 ntBASIC2.64□□□□□ -1.99
HOXD9P28356 RNU6-937P-201ENST00000384325 106 ntBASIC2.64□□□□□ -1.99
HOXD9P28356 Y_RNA.515-201ENST00000384535 112 ntBASIC2.64□□□□□ -1.99
HOXD9P28356 Y_RNA.541-201ENST00000384640 113 ntBASIC2.64□□□□□ -1.99
HOXD9P28356 AL513328.1-201ENST00000446460 224 ntBASIC2.64□□□□□ -1.99
HOXD9P28356 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC2.64□□□□□ -1.99
HOXD9P28356 RNA5SP320-201ENST00000516263 124 ntBASIC2.64□□□□□ -1.99
HOXD9P28356 RNU6-567P-201ENST00000516746 107 ntBASIC2.64□□□□□ -1.99
HOXD9P28356 RNU6-111P-201ENST00000517179 105 ntBASIC2.64□□□□□ -1.99
HOXD9P28356 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC2.64□□□□□ -1.99
HOXD9P28356 MIR4423-201ENST00000580922 80 ntBASIC2.64□□□□□ -1.99
HOXD9P28356 MIR3136-201ENST00000583498 78 ntBASIC2.64□□□□□ -1.99
HOXD9P28356 AC005520.5-201ENST00000613926 164 ntBASIC2.64□□□□□ -1.99
HOXD9P28356 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.64□□□□□ -1.99
HOXD9P28356 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.64□□□□□ -1.99
HOXD9P28356 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.64□□□□□ -1.99
HOXD9P28356 AL161431.1-201ENST00000618966 4205 ntBASIC2.64□□□□□ -1.99
HOXD9P28356 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
HOXD9P28356 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.63□□□□□ -1.99
HOXD9P28356 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
HOXD9P28356 RNU6-1010P-201ENST00000362757 107 ntBASIC2.63□□□□□ -1.99
HOXD9P28356 RNU6-280P-201ENST00000364145 104 ntBASIC2.63□□□□□ -1.99
HOXD9P28356 SNORD56.5-201ENST00000364281 72 ntBASIC2.63□□□□□ -1.99
HOXD9P28356 RNU6-1083P-201ENST00000384022 107 ntBASIC2.63□□□□□ -1.99
HOXD9P28356 Y_RNA.539-201ENST00000384635 107 ntBASIC2.63□□□□□ -1.99
HOXD9P28356 SNORA67.4-201ENST00000384688 142 ntBASIC2.63□□□□□ -1.99
HOXD9P28356 MIR487A-201ENST00000385009 80 ntBASIC2.63□□□□□ -1.99
HOXD9P28356 RNU2-20P-201ENST00000410425 191 ntBASIC2.63□□□□□ -1.99
HOXD9P28356 AC009963.1-201ENST00000417265 157 ntBASIC2.63□□□□□ -1.99
HOXD9P28356 AL590135.1-201ENST00000422215 156 ntBASIC2.63□□□□□ -1.99
HOXD9P28356 AC019205.3-201ENST00000424573 156 ntBASIC2.63□□□□□ -1.99
HOXD9P28356 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.63□□□□□ -1.99
HOXD9P28356 AC005002.2-201ENST00000438228 269 ntBASIC2.63□□□□□ -1.99
HOXD9P28356 AC107626.1-201ENST00000471084 183 ntBASIC2.63□□□□□ -1.99
HOXD9P28356 AIG1P1-201ENST00000503376 148 ntBASIC2.63□□□□□ -1.99
HOXD9P28356 SNORA31.16-201ENST00000516773 139 ntBASIC2.63□□□□□ -1.99
HOXD9P28356 DEFB108E-201ENST00000524692 240 ntBASIC2.63□□□□□ -1.99
HOXD9P28356 AK6P2-201ENST00000549020 471 ntBASIC2.63□□□□□ -1.99
HOXD9P28356 AC027176.1-201ENST00000560204 514 ntBASIC2.63□□□□□ -1.99
HOXD9P28356 UBL5P4-201ENST00000562584 236 ntBASIC2.63□□□□□ -1.99
HOXD9P28356 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.63□□□□□ -1.99
HOXD9P28356 AC127459.3-201ENST00000624328 466 ntBASIC2.63□□□□□ -1.99
HOXD9P28356 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.63□□□□□ -1.99
HOXD9P28356 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.63□□□□□ -1.99
HOXD9P28356 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
HOXD9P28356 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.63□□□□□ -1.99
HOXD9P28356 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
HOXD9P28356 RNU5F-3P-201ENST00000363767 117 ntBASIC2.62□□□□□ -1.99
HOXD9P28356 RNY1-201ENST00000364228 113 ntBASIC2.62□□□□□ -1.99
HOXD9P28356 RNA5SP126-201ENST00000365092 109 ntBASIC2.62□□□□□ -1.99
HOXD9P28356 RNU6-926P-201ENST00000384075 107 ntBASIC2.62□□□□□ -1.99
HOXD9P28356 MIR518C-201ENST00000384822 101 ntBASIC2.62□□□□□ -1.99
HOXD9P28356 MIR27B-201ENST00000385129 97 ntBASIC2.62□□□□□ -1.99
HOXD9P28356 MIR147B-201ENST00000390185 80 ntBASIC2.62□□□□□ -1.99
HOXD9P28356 RNA5SP210-201ENST00000391034 120 ntBASIC2.62□□□□□ -1.99
HOXD9P28356 RNU5A-5P-201ENST00000411054 116 ntBASIC2.62□□□□□ -1.99
HOXD9P28356 HSPE1P25-201ENST00000455484 251 ntBASIC2.62□□□□□ -1.99
HOXD9P28356 AL441985.1-201ENST00000457727 251 ntBASIC2.62□□□□□ -1.99
HOXD9P28356 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.62□□□□□ -1.99
HOXD9P28356 snoU13.6-201ENST00000458785 104 ntBASIC2.62□□□□□ -1.99
HOXD9P28356 snoU13.14-201ENST00000459372 104 ntBASIC2.62□□□□□ -1.99
HOXD9P28356 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC2.62□□□□□ -1.99
HOXD9P28356 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.62□□□□□ -1.99
HOXD9P28356 CYP4A27P-201ENST00000567218 190 ntBASIC2.62□□□□□ -1.99
HOXD9P28356 AC105137.2-201ENST00000569073 466 ntBASIC2.62□□□□□ -1.99
HOXD9P28356 MIR5695-201ENST00000579717 85 ntBASIC2.62□□□□□ -1.99
HOXD9P28356 RPS15AP11-201ENST00000594193 385 ntBASIC2.62□□□□□ -1.99
HOXD9P28356 AL356575.1-201ENST00000603008 283 ntBASIC2.62□□□□□ -1.99
HOXD9P28356 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.62□□□□□ -1.99
HOXD9P28356 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.62□□□□□ -1.99
HOXD9P28356 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC2.62□□□□□ -1.99
HOXD9P28356 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.62□□□□□ -1.99
HOXD9P28356 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.61□□□□□ -1.99
HOXD9P28356 BX322639.1-202ENST00000423987 2213 ntBASIC2.61□□□□□ -1.99
HOXD9P28356 Y_RNA.16-201ENST00000362421 102 ntBASIC2.61□□□□□ -1.99
HOXD9P28356 RNU4-90P-201ENST00000362773 141 ntBASIC2.61□□□□□ -1.99
HOXD9P28356 RNU6-200P-201ENST00000364743 107 ntBASIC2.61□□□□□ -1.99
HOXD9P28356 AL603910.2-201ENST00000407268 136 ntBASIC2.61□□□□□ -1.99
HOXD9P28356 MIR548I3-201ENST00000408378 149 ntBASIC2.61□□□□□ -1.99
HOXD9P28356 MIR548I1-201ENST00000408810 149 ntBASIC2.61□□□□□ -1.99
HOXD9P28356 RNU6-1140P-201ENST00000410517 106 ntBASIC2.61□□□□□ -1.99
HOXD9P28356 RNU6-1001P-201ENST00000411265 100 ntBASIC2.61□□□□□ -1.99
HOXD9P28356 HMGB1P35-201ENST00000503360 598 ntBASIC2.61□□□□□ -1.99
HOXD9P28356 HMGB3P17-201ENST00000504195 649 ntBASIC2.61□□□□□ -1.99
HOXD9P28356 SEPT14P8-201ENST00000508026 178 ntBASIC2.61□□□□□ -1.99
HOXD9P28356 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.61□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 129.8 ms