Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
COL6A1P12109 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC3.36□□□□□ -1.87
COL6A1P12109 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL6A1P12109 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.36□□□□□ -1.87
COL6A1P12109 MIR410-201ENST00000362222 80 ntBASIC3.36□□□□□ -1.87
COL6A1P12109 SNORA68.1-201ENST00000364537 132 ntBASIC3.36□□□□□ -1.87
COL6A1P12109 Y_RNA.275-201ENST00000364726 110 ntBASIC3.36□□□□□ -1.87
COL6A1P12109 Y_RNA.292-201ENST00000364904 97 ntBASIC3.36□□□□□ -1.87
COL6A1P12109 RNU6-1175P-201ENST00000365200 107 ntBASIC3.36□□□□□ -1.87
COL6A1P12109 RNY4P28-201ENST00000365281 93 ntBASIC3.36□□□□□ -1.87
COL6A1P12109 RNU6-487P-201ENST00000365430 104 ntBASIC3.36□□□□□ -1.87
COL6A1P12109 RNU6-1083P-201ENST00000384022 107 ntBASIC3.36□□□□□ -1.87
COL6A1P12109 RNU6-851P-201ENST00000384565 107 ntBASIC3.36□□□□□ -1.87
COL6A1P12109 AL512633.1-201ENST00000399931 655 ntBASIC3.36□□□□□ -1.87
COL6A1P12109 Y_RNA.595-201ENST00000410403 105 ntBASIC3.36□□□□□ -1.87
COL6A1P12109 RNU2-61P-201ENST00000411069 191 ntBASIC3.36□□□□□ -1.87
COL6A1P12109 RNA5SP508-201ENST00000411327 119 ntBASIC3.36□□□□□ -1.87
COL6A1P12109 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.36□□□□□ -1.87
COL6A1P12109 RPL39P29-201ENST00000447779 157 ntBASIC3.36□□□□□ -1.87
COL6A1P12109 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.36□□□□□ -1.87
COL6A1P12109 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC3.36□□□□□ -1.87
COL6A1P12109 AC007395.1-201ENST00000451333 677 ntBASIC3.36□□□□□ -1.87
COL6A1P12109 AC107393.1-201ENST00000512403 346 ntBASIC3.36□□□□□ -1.87
COL6A1P12109 CYCSP23-201ENST00000519781 313 ntBASIC3.36□□□□□ -1.87
COL6A1P12109 AC021739.1-201ENST00000559631 174 ntBASIC3.36□□□□□ -1.87
COL6A1P12109 AC005176.2-201ENST00000596933 147 ntBASIC3.36□□□□□ -1.87
COL6A1P12109 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.36□□□□□ -1.87
COL6A1P12109 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.36□□□□□ -1.87
COL6A1P12109 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
COL6A1P12109 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.35□□□□□ -1.87
COL6A1P12109 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.35□□□□□ -1.87
COL6A1P12109 AL021368.2-201ENST00000606125 5352 ntBASIC3.35□□□□□ -1.87
COL6A1P12109 AL157777.2-201ENST00000258070 137 ntBASIC3.35□□□□□ -1.87
COL6A1P12109 MIR30E-201ENST00000362104 92 ntBASIC3.35□□□□□ -1.87
COL6A1P12109 RNU6-774P-201ENST00000363238 107 ntBASIC3.35□□□□□ -1.87
COL6A1P12109 Y_RNA.122-201ENST00000363331 96 ntBASIC3.35□□□□□ -1.87
COL6A1P12109 SNORA36A-201ENST00000384221 132 ntBASIC3.35□□□□□ -1.87
COL6A1P12109 RPS26P42-201ENST00000413485 326 ntBASIC3.35□□□□□ -1.87
COL6A1P12109 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC3.35□□□□□ -1.87
COL6A1P12109 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC3.35□□□□□ -1.87
COL6A1P12109 POLR2KP2-201ENST00000438155 177 ntBASIC3.35□□□□□ -1.87
COL6A1P12109 snoU13.6-201ENST00000458785 104 ntBASIC3.35□□□□□ -1.87
COL6A1P12109 Y_RNA.638-201ENST00000459374 113 ntBASIC3.35□□□□□ -1.87
COL6A1P12109 AKIRIN2P1-201ENST00000505898 352 ntBASIC3.35□□□□□ -1.87
COL6A1P12109 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC3.35□□□□□ -1.87
COL6A1P12109 Y_RNA.703-201ENST00000516846 111 ntBASIC3.35□□□□□ -1.87
COL6A1P12109 RNU6-1212P-201ENST00000517023 104 ntBASIC3.35□□□□□ -1.87
COL6A1P12109 SCARNA11.3-201ENST00000517276 130 ntBASIC3.35□□□□□ -1.87
COL6A1P12109 AC087441.2-201ENST00000529141 262 ntBASIC3.35□□□□□ -1.87
COL6A1P12109 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC3.35□□□□□ -1.87
COL6A1P12109 MIR3616-201ENST00000584070 92 ntBASIC3.35□□□□□ -1.87
COL6A1P12109 AC008749.1-201ENST00000597650 306 ntBASIC3.35□□□□□ -1.87
COL6A1P12109 AC072026.1-201ENST00000605023 201 ntBASIC3.35□□□□□ -1.87
COL6A1P12109 AC010999.1-201ENST00000611856 324 ntBASIC3.35□□□□□ -1.87
COL6A1P12109 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
COL6A1P12109 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL6A1P12109 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
COL6A1P12109 AC096644.4-201ENST00000563417 2912 ntBASIC3.35□□□□□ -1.87
COL6A1P12109 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.35□□□□□ -1.87
COL6A1P12109 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
COL6A1P12109 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC3.34□□□□□ -1.87
COL6A1P12109 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
COL6A1P12109 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
COL6A1P12109 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
COL6A1P12109 AC073325.2-201ENST00000339545 159 ntBASIC3.34□□□□□ -1.87
COL6A1P12109 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
COL6A1P12109 RNU6-961P-201ENST00000363893 105 ntBASIC3.34□□□□□ -1.87
COL6A1P12109 Y_RNA.331-201ENST00000365267 102 ntBASIC3.34□□□□□ -1.87
COL6A1P12109 SNORA19-201ENST00000384737 128 ntBASIC3.34□□□□□ -1.87
COL6A1P12109 MIR487A-201ENST00000385009 80 ntBASIC3.34□□□□□ -1.87
COL6A1P12109 MIR147B-201ENST00000390185 80 ntBASIC3.34□□□□□ -1.87
COL6A1P12109 SNORA26.3-201ENST00000391119 136 ntBASIC3.34□□□□□ -1.87
COL6A1P12109 AC012306.1-201ENST00000423267 114 ntBASIC3.34□□□□□ -1.87
COL6A1P12109 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC3.34□□□□□ -1.87
COL6A1P12109 AC010095.1-201ENST00000443543 144 ntBASIC3.34□□□□□ -1.87
COL6A1P12109 AP001025.1-201ENST00000486139 332 ntBASIC3.34□□□□□ -1.87
COL6A1P12109 RPPH1-2P-201ENST00000516688 293 ntBASIC3.34□□□□□ -1.87
COL6A1P12109 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.34□□□□□ -1.87
COL6A1P12109 SNORD19.2-201ENST00000516978 73 ntBASIC3.34□□□□□ -1.87
COL6A1P12109 ACA59.2-201ENST00000517061 156 ntBASIC3.34□□□□□ -1.87
COL6A1P12109 AC115990.1-201ENST00000526957 301 ntBASIC3.34□□□□□ -1.87
COL6A1P12109 AC079600.2-201ENST00000550076 130 ntBASIC3.34□□□□□ -1.87
COL6A1P12109 MIR3117-201ENST00000584034 78 ntBASIC3.34□□□□□ -1.87
COL6A1P12109 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC3.34□□□□□ -1.87
COL6A1P12109 MIR7153-201ENST00000637758 57 ntBASIC3.34□□□□□ -1.87
COL6A1P12109 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.34□□□□□ -1.88
COL6A1P12109 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
COL6A1P12109 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.88
COL6A1P12109 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.33□□□□□ -1.88
COL6A1P12109 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
COL6A1P12109 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
COL6A1P12109 UBE2WP1-201ENST00000362030 340 ntBASIC3.33□□□□□ -1.88
COL6A1P12109 Y_RNA.82-201ENST00000363000 102 ntBASIC3.33□□□□□ -1.88
COL6A1P12109 Y_RNA.92-201ENST00000363043 102 ntBASIC3.33□□□□□ -1.88
COL6A1P12109 RNU6-873P-201ENST00000363833 107 ntBASIC3.33□□□□□ -1.88
COL6A1P12109 Y_RNA.235-201ENST00000364412 102 ntBASIC3.33□□□□□ -1.88
COL6A1P12109 Y_RNA.306-201ENST00000365015 102 ntBASIC3.33□□□□□ -1.88
COL6A1P12109 SNORA72.2-201ENST00000365028 127 ntBASIC3.33□□□□□ -1.88
COL6A1P12109 Y_RNA.312-201ENST00000365089 102 ntBASIC3.33□□□□□ -1.88
COL6A1P12109 Y_RNA.322-201ENST00000365151 102 ntBASIC3.33□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 120.8 ms