Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC010733.2-201ENST00000589496 5702 ntBASIC2.9□□□□□ -1.94
COL3A1P02461 Y_RNA.4-201ENST00000362333 112 ntBASIC2.9□□□□□ -1.95
COL3A1P02461 SNORD114-1-201ENST00000362705 72 ntBASIC2.9□□□□□ -1.95
COL3A1P02461 RNA5SP99-201ENST00000364020 114 ntBASIC2.9□□□□□ -1.95
COL3A1P02461 Y_RNA.233-201ENST00000364407 101 ntBASIC2.9□□□□□ -1.95
COL3A1P02461 RNU6-1117P-201ENST00000384525 104 ntBASIC2.9□□□□□ -1.95
COL3A1P02461 RNU6-394P-201ENST00000410735 107 ntBASIC2.9□□□□□ -1.95
COL3A1P02461 RN7SKP51-201ENST00000410781 304 ntBASIC2.9□□□□□ -1.95
COL3A1P02461 TRAPPC2P9-201ENST00000434556 343 ntBASIC2.9□□□□□ -1.95
COL3A1P02461 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.9□□□□□ -1.95
COL3A1P02461 AC027288.2-201ENST00000553028 243 ntBASIC2.9□□□□□ -1.95
COL3A1P02461 MIR3144-201ENST00000579460 79 ntBASIC2.9□□□□□ -1.95
COL3A1P02461 MIR5002-201ENST00000584713 97 ntBASIC2.9□□□□□ -1.95
COL3A1P02461 AL078605.1-201ENST00000603529 500 ntBASIC2.9□□□□□ -1.95
COL3A1P02461 Hammerhead_HH10.1-201ENST00000620658 125 ntBASIC2.9□□□□□ -1.95
COL3A1P02461 U4.7-201ENST00000638126 106 ntBASIC2.9□□□□□ -1.95
COL3A1P02461 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.9□□□□□ -1.95
COL3A1P02461 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.89□□□□□ -1.95
COL3A1P02461 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.89□□□□□ -1.95
COL3A1P02461 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2.89□□□□□ -1.95
COL3A1P02461 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.89□□□□□ -1.95
COL3A1P02461 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC2.89□□□□□ -1.95
COL3A1P02461 Y_RNA.8-201ENST00000362353 102 ntBASIC2.89□□□□□ -1.95
COL3A1P02461 Y_RNA.240-201ENST00000364469 95 ntBASIC2.89□□□□□ -1.95
COL3A1P02461 RNU6-17P-201ENST00000384245 107 ntBASIC2.89□□□□□ -1.95
COL3A1P02461 RNU6-843P-201ENST00000384454 104 ntBASIC2.89□□□□□ -1.95
COL3A1P02461 RNU6-18P-201ENST00000384527 107 ntBASIC2.89□□□□□ -1.95
COL3A1P02461 RNU6-21P-201ENST00000384710 107 ntBASIC2.89□□□□□ -1.95
COL3A1P02461 SNORA40C-201ENST00000391285 128 ntBASIC2.89□□□□□ -1.95
COL3A1P02461 RNU2-61P-201ENST00000411069 191 ntBASIC2.89□□□□□ -1.95
COL3A1P02461 AL356867.1-201ENST00000429623 299 ntBASIC2.89□□□□□ -1.95
COL3A1P02461 Z98742.2-201ENST00000431564 187 ntBASIC2.89□□□□□ -1.95
COL3A1P02461 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC2.89□□□□□ -1.95
COL3A1P02461 AC009296.1-201ENST00000443146 155 ntBASIC2.89□□□□□ -1.95
COL3A1P02461 HMGN2P23-201ENST00000456759 269 ntBASIC2.89□□□□□ -1.95
COL3A1P02461 RPL23AP75-201ENST00000491601 451 ntBASIC2.89□□□□□ -1.95
COL3A1P02461 SNORA31.18-201ENST00000517043 134 ntBASIC2.89□□□□□ -1.95
COL3A1P02461 RNA5SP290-201ENST00000517133 127 ntBASIC2.89□□□□□ -1.95
COL3A1P02461 RNU4-60P-201ENST00000517239 135 ntBASIC2.89□□□□□ -1.95
COL3A1P02461 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.89□□□□□ -1.95
COL3A1P02461 AK6P2-201ENST00000549020 471 ntBASIC2.89□□□□□ -1.95
COL3A1P02461 HMGB1P14-201ENST00000557424 591 ntBASIC2.89□□□□□ -1.95
COL3A1P02461 FAM60BP-201ENST00000578364 658 ntBASIC2.89□□□□□ -1.95
COL3A1P02461 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.89□□□□□ -1.95
COL3A1P02461 MIR4282-201ENST00000583613 67 ntBASIC2.89□□□□□ -1.95
COL3A1P02461 RMST_6.1-201ENST00000611980 203 ntBASIC2.89□□□□□ -1.95
COL3A1P02461 AL590240.4-201ENST00000616908 390 ntBASIC2.89□□□□□ -1.95
COL3A1P02461 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC2.89□□□□□ -1.95
COL3A1P02461 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.88□□□□□ -1.95
COL3A1P02461 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC2.88□□□□□ -1.95
COL3A1P02461 DSG2-AS1-202ENST00000583706 2024 ntTSL 5 BASIC2.88□□□□□ -1.95
COL3A1P02461 RNU6-879P-201ENST00000364328 108 ntBASIC2.88□□□□□ -1.95
COL3A1P02461 RNU6-1027P-201ENST00000383998 107 ntBASIC2.88□□□□□ -1.95
COL3A1P02461 RNU6-926P-201ENST00000384075 107 ntBASIC2.88□□□□□ -1.95
COL3A1P02461 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.88□□□□□ -1.95
COL3A1P02461 AC007560.1-201ENST00000426912 237 ntBASIC2.88□□□□□ -1.95
COL3A1P02461 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.88□□□□□ -1.95
COL3A1P02461 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.88□□□□□ -1.95
COL3A1P02461 CKS1BP2-201ENST00000497342 240 ntBASIC2.88□□□□□ -1.95
COL3A1P02461 SNORD116-28-201ENST00000516123 91 ntBASIC2.88□□□□□ -1.95
COL3A1P02461 RPL23AP88-201ENST00000605759 454 ntBASIC2.88□□□□□ -1.95
COL3A1P02461 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.88□□□□□ -1.95
COL3A1P02461 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.88□□□□□ -1.95
COL3A1P02461 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.88□□□□□ -1.95
COL3A1P02461 AC009541.1-201ENST00000438279 2662 ntBASIC2.88□□□□□ -1.95
COL3A1P02461 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.87□□□□□ -1.95
COL3A1P02461 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
COL3A1P02461 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL3A1P02461 SNORA25.1-201ENST00000362326 128 ntBASIC2.87□□□□□ -1.95
COL3A1P02461 Y_RNA.275-201ENST00000364726 110 ntBASIC2.87□□□□□ -1.95
COL3A1P02461 RNU6-541P-201ENST00000384709 110 ntBASIC2.87□□□□□ -1.95
COL3A1P02461 AL390729.2-201ENST00000416137 156 ntBASIC2.87□□□□□ -1.95
COL3A1P02461 AC005002.2-201ENST00000438228 269 ntBASIC2.87□□□□□ -1.95
COL3A1P02461 RPS15AP7-201ENST00000439294 405 ntBASIC2.87□□□□□ -1.95
COL3A1P02461 AP001324.2-201ENST00000461163 319 ntBASIC2.87□□□□□ -1.95
COL3A1P02461 SCARNA15.2-201ENST00000516409 127 ntBASIC2.87□□□□□ -1.95
COL3A1P02461 RNU6-62P-201ENST00000516526 102 ntBASIC2.87□□□□□ -1.95
COL3A1P02461 RNU6-572P-201ENST00000516724 80 ntBASIC2.87□□□□□ -1.95
COL3A1P02461 RNU7-110P-201ENST00000516891 62 ntBASIC2.87□□□□□ -1.95
COL3A1P02461 SNORA31.19-201ENST00000517079 126 ntBASIC2.87□□□□□ -1.95
COL3A1P02461 MIR3921-201ENST00000577308 85 ntBASIC2.87□□□□□ -1.95
COL3A1P02461 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC2.87□□□□□ -1.95
COL3A1P02461 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL3A1P02461 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.87□□□□□ -1.95
COL3A1P02461 BX322639.1-202ENST00000423987 2213 ntBASIC2.87□□□□□ -1.95
COL3A1P02461 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC2.87□□□□□ -1.95
COL3A1P02461 AL133412.1-201ENST00000380194 2992 ntBASIC2.86□□□□□ -1.95
COL3A1P02461 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
COL3A1P02461 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC2.86□□□□□ -1.95
COL3A1P02461 Y_RNA.82-201ENST00000363000 102 ntBASIC2.86□□□□□ -1.95
COL3A1P02461 Y_RNA.92-201ENST00000363043 102 ntBASIC2.86□□□□□ -1.95
COL3A1P02461 Y_RNA.226-201ENST00000364337 114 ntBASIC2.86□□□□□ -1.95
COL3A1P02461 Y_RNA.235-201ENST00000364412 102 ntBASIC2.86□□□□□ -1.95
COL3A1P02461 RNU6-336P-201ENST00000364891 107 ntBASIC2.86□□□□□ -1.95
COL3A1P02461 Y_RNA.306-201ENST00000365015 102 ntBASIC2.86□□□□□ -1.95
COL3A1P02461 Y_RNA.312-201ENST00000365089 102 ntBASIC2.86□□□□□ -1.95
COL3A1P02461 Y_RNA.322-201ENST00000365151 102 ntBASIC2.86□□□□□ -1.95
COL3A1P02461 RNU6-514P-201ENST00000384208 107 ntBASIC2.86□□□□□ -1.95
COL3A1P02461 RNU6-804P-201ENST00000384286 107 ntBASIC2.86□□□□□ -1.95
COL3A1P02461 RNU6-166P-201ENST00000384371 107 ntBASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms