Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.29□□□□□ -2.04
HOXC11O43248 RNU6-344P-201ENST00000516635 111 ntBASIC2.29□□□□□ -2.04
HOXC11O43248 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.29□□□□□ -2.04
HOXC11O43248 AL355802.3-201ENST00000607571 545 ntBASIC2.29□□□□□ -2.04
HOXC11O43248 AC005014.2-201ENST00000607795 599 ntBASIC2.29□□□□□ -2.04
HOXC11O43248 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.29□□□□□ -2.04
HOXC11O43248 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC2.29□□□□□ -2.04
HOXC11O43248 AL590240.4-201ENST00000616908 390 ntBASIC2.29□□□□□ -2.04
HOXC11O43248 AL359757.2-201ENST00000624309 274 ntBASIC2.29□□□□□ -2.04
HOXC11O43248 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.29□□□□□ -2.04
HOXC11O43248 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
HOXC11O43248 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.28□□□□□ -2.04
HOXC11O43248 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC2.28□□□□□ -2.04
HOXC11O43248 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.28□□□□□ -2.04
HOXC11O43248 SNORD114-1-201ENST00000362705 72 ntBASIC2.28□□□□□ -2.04
HOXC11O43248 RNU6-1305P-201ENST00000364353 104 ntBASIC2.28□□□□□ -2.04
HOXC11O43248 SNORA16B-201ENST00000364674 135 ntBASIC2.28□□□□□ -2.04
HOXC11O43248 RNU1-51P-201ENST00000365345 176 ntBASIC2.28□□□□□ -2.04
HOXC11O43248 SNORA51.11-201ENST00000384442 131 ntBASIC2.28□□□□□ -2.04
HOXC11O43248 MIR597-201ENST00000384968 97 ntBASIC2.28□□□□□ -2.04
HOXC11O43248 RNU6-159P-201ENST00000391080 106 ntBASIC2.28□□□□□ -2.04
HOXC11O43248 MIR1283-2-201ENST00000408621 87 ntBASIC2.28□□□□□ -2.04
HOXC11O43248 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.28□□□□□ -2.04
HOXC11O43248 AC007098.1-201ENST00000420122 367 ntBASIC2.28□□□□□ -2.04
HOXC11O43248 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC2.28□□□□□ -2.04
HOXC11O43248 AC091951.2-201ENST00000500762 203 ntBASIC2.28□□□□□ -2.04
HOXC11O43248 RNA5SP200-201ENST00000516360 103 ntBASIC2.28□□□□□ -2.04
HOXC11O43248 SCARNA16.2-201ENST00000516520 172 ntBASIC2.28□□□□□ -2.04
HOXC11O43248 Y_RNA.702-201ENST00000516843 96 ntBASIC2.28□□□□□ -2.04
HOXC11O43248 RNU6-264P-201ENST00000517134 104 ntBASIC2.28□□□□□ -2.04
HOXC11O43248 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC2.28□□□□□ -2.04
HOXC11O43248 AC133104.2-201ENST00000615272 193 ntBASIC2.28□□□□□ -2.04
HOXC11O43248 AC098657.3-201ENST00000620434 263 ntBASIC2.28□□□□□ -2.04
HOXC11O43248 U1.36-201ENST00000620684 176 ntBASIC2.28□□□□□ -2.04
HOXC11O43248 AC009831.4-201ENST00000620744 325 ntBASIC2.28□□□□□ -2.04
HOXC11O43248 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.28□□□□□ -2.04
HOXC11O43248 AC245060.5-201ENST00000610778 3293 ntBASIC2.28□□□□□ -2.04
HOXC11O43248 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
HOXC11O43248 ZNF720P1-201ENST00000562403 1939 ntBASIC2.27□□□□□ -2.05
HOXC11O43248 RNU1-62P-201ENST00000362599 164 ntBASIC2.27□□□□□ -2.05
HOXC11O43248 RNU6-873P-201ENST00000363833 107 ntBASIC2.27□□□□□ -2.05
HOXC11O43248 SNORD114-6-201ENST00000364393 72 ntBASIC2.27□□□□□ -2.05
HOXC11O43248 Y_RNA.387-201ENST00000383918 102 ntBASIC2.27□□□□□ -2.05
HOXC11O43248 RNU6-1297P-201ENST00000384415 104 ntBASIC2.27□□□□□ -2.05
HOXC11O43248 MIR190B-201ENST00000401119 79 ntBASIC2.27□□□□□ -2.05
HOXC11O43248 USP9YP16-201ENST00000430287 407 ntBASIC2.27□□□□□ -2.05
HOXC11O43248 MTND3P23-201ENST00000431980 347 ntBASIC2.27□□□□□ -2.05
HOXC11O43248 USP9YP23-201ENST00000455085 407 ntBASIC2.27□□□□□ -2.05
HOXC11O43248 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.27□□□□□ -2.05
HOXC11O43248 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC2.27□□□□□ -2.05
HOXC11O43248 AP000870.1-201ENST00000472927 406 ntBASIC2.27□□□□□ -2.05
HOXC11O43248 RNU6-875P-201ENST00000516488 106 ntBASIC2.27□□□□□ -2.05
HOXC11O43248 RNU1-117P-201ENST00000517041 158 ntBASIC2.27□□□□□ -2.05
HOXC11O43248 RNU6-1213P-201ENST00000517075 94 ntBASIC2.27□□□□□ -2.05
HOXC11O43248 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC2.27□□□□□ -2.05
HOXC11O43248 MIR5701-3-201ENST00000578890 82 ntBASIC2.27□□□□□ -2.05
HOXC11O43248 MIR5701-1-201ENST00000585138 82 ntBASIC2.27□□□□□ -2.05
HOXC11O43248 SNORD11B-201ENST00000607707 90 ntBASIC2.27□□□□□ -2.05
HOXC11O43248 MIR5701-2-201ENST00000615634 82 ntBASIC2.27□□□□□ -2.05
HOXC11O43248 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.27□□□□□ -2.05
HOXC11O43248 MIR7843-201ENST00000622274 79 ntBASIC2.27□□□□□ -2.05
HOXC11O43248 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.27□□□□□ -2.05
HOXC11O43248 ZNF702P-202ENST00000434269 1966 ntBASIC2.27□□□□□ -2.05
HOXC11O43248 Y_RNA.474-201ENST00000384341 102 ntBASIC2.26□□□□□ -2.05
HOXC11O43248 SNORA64-201ENST00000384674 134 ntBASIC2.26□□□□□ -2.05
HOXC11O43248 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
HOXC11O43248 AC004866.1-201ENST00000411748 78 ntBASIC2.26□□□□□ -2.05
HOXC11O43248 AL445305.1-201ENST00000432577 575 ntBASIC2.26□□□□□ -2.05
HOXC11O43248 MTND2P29-201ENST00000438595 412 ntBASIC2.26□□□□□ -2.05
HOXC11O43248 AL357134.1-201ENST00000445848 426 ntBASIC2.26□□□□□ -2.05
HOXC11O43248 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC2.26□□□□□ -2.05
HOXC11O43248 RNU7-87P-201ENST00000459343 62 ntBASIC2.26□□□□□ -2.05
HOXC11O43248 RPL17P19-201ENST00000489069 552 ntBASIC2.26□□□□□ -2.05
HOXC11O43248 RNU6-948P-201ENST00000516374 107 ntBASIC2.26□□□□□ -2.05
HOXC11O43248 RNU2-34P-201ENST00000516534 121 ntBASIC2.26□□□□□ -2.05
HOXC11O43248 SCARNA16.3-201ENST00000516595 184 ntBASIC2.26□□□□□ -2.05
HOXC11O43248 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
HOXC11O43248 UBL5P4-201ENST00000562584 236 ntBASIC2.26□□□□□ -2.05
HOXC11O43248 AC104260.1-201ENST00000616660 539 ntBASIC2.26□□□□□ -2.05
HOXC11O43248 MIR6132-201ENST00000622083 109 ntBASIC2.26□□□□□ -2.05
HOXC11O43248 AL078596.1-201ENST00000624856 447 ntBASIC2.26□□□□□ -2.05
HOXC11O43248 MIR1302-1-201ENST00000637932 143 ntBASIC2.26□□□□□ -2.05
HOXC11O43248 RNA5SP276-201ENST00000362580 94 ntBASIC2.25□□□□□ -2.05
HOXC11O43248 Y_RNA.106-201ENST00000363189 100 ntBASIC2.25□□□□□ -2.05
HOXC11O43248 RNU6-1188P-201ENST00000363795 107 ntBASIC2.25□□□□□ -2.05
HOXC11O43248 RNU6-418P-201ENST00000384035 107 ntBASIC2.25□□□□□ -2.05
HOXC11O43248 MIR586-201ENST00000385035 97 ntBASIC2.25□□□□□ -2.05
HOXC11O43248 AL033519.2-201ENST00000403958 392 ntBASIC2.25□□□□□ -2.05
HOXC11O43248 AL512604.1-201ENST00000404812 257 ntBASIC2.25□□□□□ -2.05
HOXC11O43248 SNORA11.4-201ENST00000408823 129 ntBASIC2.25□□□□□ -2.05
HOXC11O43248 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.25□□□□□ -2.05
HOXC11O43248 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC2.25□□□□□ -2.05
HOXC11O43248 MTCO1P44-201ENST00000441935 243 ntBASIC2.25□□□□□ -2.05
HOXC11O43248 Y_RNA.653-201ENST00000459091 95 ntBASIC2.25□□□□□ -2.05
HOXC11O43248 AC010531.2-201ENST00000465012 153 ntBASIC2.25□□□□□ -2.05
HOXC11O43248 AC097473.1-201ENST00000508142 408 ntBASIC2.25□□□□□ -2.05
HOXC11O43248 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC2.25□□□□□ -2.05
HOXC11O43248 RNU6-1114P-201ENST00000516022 107 ntBASIC2.25□□□□□ -2.05
HOXC11O43248 MIR5695-201ENST00000579717 85 ntBASIC2.25□□□□□ -2.05
HOXC11O43248 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC2.25□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 86.9 ms