Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 ZNF658B-202ENST00000615961 3375 ntBASIC3.79□□□□□ -1.8
CCDC9Q9Y3X0 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
CCDC9Q9Y3X0 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC3.78□□□□□ -1.8
CCDC9Q9Y3X0 Y_RNA.128-201ENST00000363391 112 ntBASIC3.78□□□□□ -1.8
CCDC9Q9Y3X0 RNU6-281P-201ENST00000384212 103 ntBASIC3.78□□□□□ -1.8
CCDC9Q9Y3X0 EDDM3CP-201ENST00000415977 425 ntBASIC3.78□□□□□ -1.8
CCDC9Q9Y3X0 AC018865.2-201ENST00000423631 129 ntBASIC3.78□□□□□ -1.8
CCDC9Q9Y3X0 AL137792.2-201ENST00000443484 235 ntBASIC3.78□□□□□ -1.8
CCDC9Q9Y3X0 IFNA11P-201ENST00000446352 526 ntBASIC3.78□□□□□ -1.8
CCDC9Q9Y3X0 Y_RNA.631-201ENST00000459607 101 ntBASIC3.78□□□□□ -1.8
CCDC9Q9Y3X0 RN7SL283P-201ENST00000489055 303 ntBASIC3.78□□□□□ -1.8
CCDC9Q9Y3X0 RPS29P21-201ENST00000496272 170 ntBASIC3.78□□□□□ -1.8
CCDC9Q9Y3X0 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC3.78□□□□□ -1.8
CCDC9Q9Y3X0 AC006157.1-201ENST00000611750 366 ntBASIC3.78□□□□□ -1.8
CCDC9Q9Y3X0 U2.1-201ENST00000618978 145 ntBASIC3.78□□□□□ -1.8
CCDC9Q9Y3X0 AC134503.1-201ENST00000633048 54 ntBASIC3.78□□□□□ -1.8
CCDC9Q9Y3X0 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC9Q9Y3X0 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.77□□□□□ -1.81
CCDC9Q9Y3X0 RNU1-52P-201ENST00000384190 164 ntBASIC3.77□□□□□ -1.81
CCDC9Q9Y3X0 AL033519.2-201ENST00000403958 392 ntBASIC3.77□□□□□ -1.81
CCDC9Q9Y3X0 AC004866.1-201ENST00000411748 78 ntBASIC3.77□□□□□ -1.81
CCDC9Q9Y3X0 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC9Q9Y3X0 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC9Q9Y3X0 U8.22-201ENST00000459141 133 ntBASIC3.77□□□□□ -1.81
CCDC9Q9Y3X0 RN7SL442P-201ENST00000473804 320 ntBASIC3.77□□□□□ -1.81
CCDC9Q9Y3X0 RNU1-117P-201ENST00000517041 158 ntBASIC3.77□□□□□ -1.81
CCDC9Q9Y3X0 AL442663.2-201ENST00000554385 511 ntBASIC3.77□□□□□ -1.81
CCDC9Q9Y3X0 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC9Q9Y3X0 MIR4753-201ENST00000585119 83 ntBASIC3.77□□□□□ -1.81
CCDC9Q9Y3X0 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC9Q9Y3X0 AC091925.1-201ENST00000623204 462 ntBASIC3.77□□□□□ -1.81
CCDC9Q9Y3X0 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC9Q9Y3X0 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC3.77□□□□□ -1.81
CCDC9Q9Y3X0 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC9Q9Y3X0 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
CCDC9Q9Y3X0 RNU1-75P-201ENST00000347264 129 ntBASIC3.76□□□□□ -1.81
CCDC9Q9Y3X0 Y_RNA.496-201ENST00000384444 101 ntBASIC3.76□□□□□ -1.81
CCDC9Q9Y3X0 MIR9-1-201ENST00000385198 89 ntBASIC3.76□□□□□ -1.81
CCDC9Q9Y3X0 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC9Q9Y3X0 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC9Q9Y3X0 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC9Q9Y3X0 snoU13.23-201ENST00000458863 104 ntBASIC3.76□□□□□ -1.81
CCDC9Q9Y3X0 Y_RNA.683-201ENST00000516508 93 ntBASIC3.76□□□□□ -1.81
CCDC9Q9Y3X0 RNU6-1153P-201ENST00000516760 105 ntBASIC3.76□□□□□ -1.81
CCDC9Q9Y3X0 RRN3P3-201ENST00000549207 578 ntBASIC3.76□□□□□ -1.81
CCDC9Q9Y3X0 PRELID2P1-201ENST00000552837 301 ntBASIC3.76□□□□□ -1.81
CCDC9Q9Y3X0 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC3.76□□□□□ -1.81
CCDC9Q9Y3X0 AL031274.2-201ENST00000599419 203 ntBASIC3.76□□□□□ -1.81
CCDC9Q9Y3X0 SNORD14A-201ENST00000606526 91 ntBASIC3.76□□□□□ -1.81
CCDC9Q9Y3X0 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC3.76□□□□□ -1.81
CCDC9Q9Y3X0 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
CCDC9Q9Y3X0 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.75□□□□□ -1.81
CCDC9Q9Y3X0 RNU6-545P-201ENST00000362681 104 ntBASIC3.75□□□□□ -1.81
CCDC9Q9Y3X0 Y_RNA.132-201ENST00000363421 102 ntBASIC3.75□□□□□ -1.81
CCDC9Q9Y3X0 RNU6-727P-201ENST00000363592 107 ntBASIC3.75□□□□□ -1.81
CCDC9Q9Y3X0 MIR1283-1-201ENST00000408494 87 ntBASIC3.75□□□□□ -1.81
CCDC9Q9Y3X0 RNU6-1001P-201ENST00000411265 100 ntBASIC3.75□□□□□ -1.81
CCDC9Q9Y3X0 HMGN2P35-201ENST00000412164 270 ntBASIC3.75□□□□□ -1.81
CCDC9Q9Y3X0 AC007064.1-201ENST00000412238 351 ntBASIC3.75□□□□□ -1.81
CCDC9Q9Y3X0 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC9Q9Y3X0 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.75□□□□□ -1.81
CCDC9Q9Y3X0 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.75□□□□□ -1.81
CCDC9Q9Y3X0 AC096644.2-201ENST00000429278 159 ntBASIC3.75□□□□□ -1.81
CCDC9Q9Y3X0 AC074290.1-201ENST00000448883 135 ntBASIC3.75□□□□□ -1.81
CCDC9Q9Y3X0 GSTA11P-201ENST00000452866 669 ntBASIC3.75□□□□□ -1.81
CCDC9Q9Y3X0 AC114982.1-201ENST00000469402 321 ntBASIC3.75□□□□□ -1.81
CCDC9Q9Y3X0 AC091179.3-201ENST00000474761 144 ntBASIC3.75□□□□□ -1.81
CCDC9Q9Y3X0 AC015712.3-201ENST00000559380 164 ntBASIC3.75□□□□□ -1.81
CCDC9Q9Y3X0 AC006600.1-201ENST00000572529 153 ntBASIC3.75□□□□□ -1.81
CCDC9Q9Y3X0 AC125232.2-201ENST00000592457 143 ntBASIC3.75□□□□□ -1.81
CCDC9Q9Y3X0 VN1R91P-201ENST00000594377 169 ntBASIC3.75□□□□□ -1.81
CCDC9Q9Y3X0 MUM1L1-203ENST00000372552 3957 ntAPPRIS P1 TSL 5 BASIC3.75□□□□□ -1.81
CCDC9Q9Y3X0 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
CCDC9Q9Y3X0 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC3.74□□□□□ -1.81
CCDC9Q9Y3X0 Y_RNA.138-201ENST00000363462 102 ntBASIC3.74□□□□□ -1.81
CCDC9Q9Y3X0 SNORA67.4-201ENST00000384688 142 ntBASIC3.74□□□□□ -1.81
CCDC9Q9Y3X0 RNU6-308P-201ENST00000390957 107 ntBASIC3.74□□□□□ -1.81
CCDC9Q9Y3X0 RNA5SP213-201ENST00000391031 106 ntBASIC3.74□□□□□ -1.81
CCDC9Q9Y3X0 MIR548P-201ENST00000408336 84 ntBASIC3.74□□□□□ -1.81
CCDC9Q9Y3X0 RNA5SP270-201ENST00000411361 118 ntBASIC3.74□□□□□ -1.81
CCDC9Q9Y3X0 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC9Q9Y3X0 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC3.74□□□□□ -1.81
CCDC9Q9Y3X0 AC007677.1-201ENST00000445757 515 ntBASIC3.74□□□□□ -1.81
CCDC9Q9Y3X0 AC108210.2-201ENST00000503681 201 ntBASIC3.74□□□□□ -1.81
CCDC9Q9Y3X0 RNU6-911P-201ENST00000516523 104 ntBASIC3.74□□□□□ -1.81
CCDC9Q9Y3X0 SNORA64.4-201ENST00000516632 81 ntBASIC3.74□□□□□ -1.81
CCDC9Q9Y3X0 AC104027.1-201ENST00000521887 300 ntBASIC3.74□□□□□ -1.81
CCDC9Q9Y3X0 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC3.74□□□□□ -1.81
CCDC9Q9Y3X0 MIR5194-201ENST00000582634 120 ntBASIC3.74□□□□□ -1.81
CCDC9Q9Y3X0 AC108206.1-201ENST00000570186 4159 ntBASIC3.74□□□□□ -1.81
CCDC9Q9Y3X0 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC3.74□□□□□ -1.81
CCDC9Q9Y3X0 MTND5P35-201ENST00000557537 1720 ntBASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 Y_RNA.99-201ENST00000363138 105 ntBASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 SNORA63-201ENST00000363450 132 ntBASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 SNORD56.3-201ENST00000363507 71 ntBASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 RNU6-1305P-201ENST00000364353 104 ntBASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 SNORD14D-201ENST00000384390 87 ntBASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 MIR1302-11-201ENST00000408051 138 ntBASIC3.73□□□□□ -1.81
CCDC9Q9Y3X0 MIR1302-9-201ENST00000408365 138 ntBASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms