Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 snoU13.30-201ENST00000458951 104 ntBASIC1.63□□□□□ -2.15
FOXA2Q9Y261 RNU6-498P-201ENST00000459468 107 ntBASIC1.63□□□□□ -2.15
FOXA2Q9Y261 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.63□□□□□ -2.15
FOXA2Q9Y261 RNU6-864P-201ENST00000516256 108 ntBASIC1.63□□□□□ -2.15
FOXA2Q9Y261 RNU6-1198P-201ENST00000516904 67 ntBASIC1.63□□□□□ -2.15
FOXA2Q9Y261 RNU1-117P-201ENST00000517041 158 ntBASIC1.63□□□□□ -2.15
FOXA2Q9Y261 MIR4648-201ENST00000580107 72 ntBASIC1.63□□□□□ -2.15
FOXA2Q9Y261 MIR3935-201ENST00000583472 104 ntBASIC1.63□□□□□ -2.15
FOXA2Q9Y261 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.63□□□□□ -2.15
FOXA2Q9Y261 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
FOXA2Q9Y261 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.62□□□□□ -2.15
FOXA2Q9Y261 Y_RNA.6-201ENST00000362350 114 ntBASIC1.62□□□□□ -2.15
FOXA2Q9Y261 SNORD115-32-201ENST00000364079 82 ntBASIC1.62□□□□□ -2.15
FOXA2Q9Y261 U8.10-201ENST00000384260 133 ntBASIC1.62□□□□□ -2.15
FOXA2Q9Y261 RNU6-541P-201ENST00000384709 110 ntBASIC1.62□□□□□ -2.15
FOXA2Q9Y261 MIR520A-201ENST00000384862 85 ntBASIC1.62□□□□□ -2.15
FOXA2Q9Y261 MIR586-201ENST00000385035 97 ntBASIC1.62□□□□□ -2.15
FOXA2Q9Y261 MIR153-2-201ENST00000385225 87 ntBASIC1.62□□□□□ -2.15
FOXA2Q9Y261 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
FOXA2Q9Y261 MIR548F1-201ENST00000408667 84 ntBASIC1.62□□□□□ -2.15
FOXA2Q9Y261 AC060773.1-201ENST00000421698 310 ntBASIC1.62□□□□□ -2.15
FOXA2Q9Y261 AC099677.2-201ENST00000436385 175 ntBASIC1.62□□□□□ -2.15
FOXA2Q9Y261 MTATP6P13-201ENST00000438531 667 ntBASIC1.62□□□□□ -2.15
FOXA2Q9Y261 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.62□□□□□ -2.15
FOXA2Q9Y261 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.62□□□□□ -2.15
FOXA2Q9Y261 APOA2-205ENST00000468465 421 ntTSL 2 BASIC1.62□□□□□ -2.15
FOXA2Q9Y261 HMGN2P9-201ENST00000476875 229 ntBASIC1.62□□□□□ -2.15
FOXA2Q9Y261 AC025465.3-201ENST00000510570 311 ntBASIC1.62□□□□□ -2.15
FOXA2Q9Y261 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.62□□□□□ -2.15
FOXA2Q9Y261 AC011406.1-201ENST00000512440 370 ntBASIC1.62□□□□□ -2.15
FOXA2Q9Y261 RNU6-718P-201ENST00000516166 105 ntBASIC1.62□□□□□ -2.15
FOXA2Q9Y261 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.62□□□□□ -2.15
FOXA2Q9Y261 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.62□□□□□ -2.15
FOXA2Q9Y261 MIR4273-201ENST00000582824 84 ntBASIC1.62□□□□□ -2.15
FOXA2Q9Y261 AC010928.2-201ENST00000588017 287 ntBASIC1.62□□□□□ -2.15
FOXA2Q9Y261 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.62□□□□□ -2.15
FOXA2Q9Y261 MIR8074-201ENST00000615081 81 ntBASIC1.62□□□□□ -2.15
FOXA2Q9Y261 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.62□□□□□ -2.15
FOXA2Q9Y261 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.62□□□□□ -2.15
FOXA2Q9Y261 AL078596.1-201ENST00000624856 447 ntBASIC1.62□□□□□ -2.15
FOXA2Q9Y261 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.62□□□□□ -2.15
FOXA2Q9Y261 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.62□□□□□ -2.15
FOXA2Q9Y261 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
FOXA2Q9Y261 RNU6-414P-201ENST00000363705 104 ntBASIC1.61□□□□□ -2.15
FOXA2Q9Y261 Y_RNA.319-201ENST00000365138 92 ntBASIC1.61□□□□□ -2.15
FOXA2Q9Y261 RPL31P63-201ENST00000422565 375 ntBASIC1.61□□□□□ -2.15
FOXA2Q9Y261 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC1.61□□□□□ -2.15
FOXA2Q9Y261 RPL36AP21-201ENST00000490372 323 ntBASIC1.61□□□□□ -2.15
FOXA2Q9Y261 RNA5SP384-201ENST00000516615 116 ntBASIC1.61□□□□□ -2.15
FOXA2Q9Y261 RNU1-54P-201ENST00000517181 120 ntBASIC1.61□□□□□ -2.15
FOXA2Q9Y261 IGKV3-31-201ENST00000523109 329 ntBASIC1.61□□□□□ -2.15
FOXA2Q9Y261 HSBP1P1-201ENST00000555205 166 ntBASIC1.61□□□□□ -2.15
FOXA2Q9Y261 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.61□□□□□ -2.15
FOXA2Q9Y261 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.61□□□□□ -2.15
FOXA2Q9Y261 AC010615.1-201ENST00000594254 1764 ntBASIC1.6□□□□□ -2.15
FOXA2Q9Y261 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
FOXA2Q9Y261 MIR424-201ENST00000362227 98 ntBASIC1.6□□□□□ -2.15
FOXA2Q9Y261 RNU6-1019P-201ENST00000364424 107 ntBASIC1.6□□□□□ -2.15
FOXA2Q9Y261 RNU6-245P-201ENST00000384020 107 ntBASIC1.6□□□□□ -2.15
FOXA2Q9Y261 SNORA67.3-201ENST00000384366 140 ntBASIC1.6□□□□□ -2.15
FOXA2Q9Y261 RNU6-296P-201ENST00000384608 107 ntBASIC1.6□□□□□ -2.15
FOXA2Q9Y261 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.6□□□□□ -2.15
FOXA2Q9Y261 AL139156.1-201ENST00000412785 841 ntBASIC1.6□□□□□ -2.15
FOXA2Q9Y261 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.6□□□□□ -2.15
FOXA2Q9Y261 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.6□□□□□ -2.15
FOXA2Q9Y261 UBE2V1P8-201ENST00000437166 265 ntBASIC1.6□□□□□ -2.15
FOXA2Q9Y261 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.6□□□□□ -2.15
FOXA2Q9Y261 RNU7-57P-201ENST00000459540 60 ntBASIC1.6□□□□□ -2.15
FOXA2Q9Y261 FO393415.2-201ENST00000480085 343 ntBASIC1.6□□□□□ -2.15
FOXA2Q9Y261 RPS29P21-201ENST00000496272 170 ntBASIC1.6□□□□□ -2.15
FOXA2Q9Y261 TRAPPC2P7-201ENST00000509650 231 ntBASIC1.6□□□□□ -2.15
FOXA2Q9Y261 RNU6-1146P-201ENST00000516282 102 ntBASIC1.6□□□□□ -2.15
FOXA2Q9Y261 SNORA25.14-201ENST00000516481 132 ntBASIC1.6□□□□□ -2.15
FOXA2Q9Y261 RNU6-344P-201ENST00000516635 111 ntBASIC1.6□□□□□ -2.15
FOXA2Q9Y261 RNA5SP364-201ENST00000516938 78 ntBASIC1.6□□□□□ -2.15
FOXA2Q9Y261 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.6□□□□□ -2.15
FOXA2Q9Y261 SNORD11B-201ENST00000607707 90 ntBASIC1.6□□□□□ -2.15
FOXA2Q9Y261 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC1.6□□□□□ -2.15
FOXA2Q9Y261 AC126177.8-201ENST00000618339 1015 ntBASIC1.6□□□□□ -2.15
FOXA2Q9Y261 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.6□□□□□ -2.15
FOXA2Q9Y261 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.6□□□□□ -2.15
FOXA2Q9Y261 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC1.59□□□□□ -2.15
FOXA2Q9Y261 RNU6-831P-201ENST00000384548 107 ntBASIC1.59□□□□□ -2.15
FOXA2Q9Y261 MIR934-201ENST00000401241 83 ntBASIC1.59□□□□□ -2.15
FOXA2Q9Y261 AL023284.1-201ENST00000403956 276 ntBASIC1.59□□□□□ -2.15
FOXA2Q9Y261 SUMO2P12-201ENST00000405924 140 ntBASIC1.59□□□□□ -2.15
FOXA2Q9Y261 MIR1253-201ENST00000408273 105 ntBASIC1.59□□□□□ -2.15
FOXA2Q9Y261 RNU6-57P-201ENST00000411348 103 ntBASIC1.59□□□□□ -2.15
FOXA2Q9Y261 AL139396.1-201ENST00000421137 167 ntBASIC1.59□□□□□ -2.15
FOXA2Q9Y261 MTCO3P29-201ENST00000432119 779 ntBASIC1.59□□□□□ -2.15
FOXA2Q9Y261 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC1.59□□□□□ -2.15
FOXA2Q9Y261 RNU6-566P-201ENST00000516790 107 ntBASIC1.59□□□□□ -2.15
FOXA2Q9Y261 RNU6-1088P-201ENST00000516850 104 ntBASIC1.59□□□□□ -2.15
FOXA2Q9Y261 RNU6-58P-201ENST00000517143 103 ntBASIC1.59□□□□□ -2.15
FOXA2Q9Y261 RNA5SP454-201ENST00000517231 127 ntBASIC1.59□□□□□ -2.15
FOXA2Q9Y261 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC1.59□□□□□ -2.15
FOXA2Q9Y261 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.59□□□□□ -2.15
FOXA2Q9Y261 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.59□□□□□ -2.15
FOXA2Q9Y261 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC1.59□□□□□ -2.15
FOXA2Q9Y261 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.59□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 155.4 ms