Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 SNORD56-201ENST00000413522 71 ntBASIC4.31□□□□□ -1.72
COL17A1Q9UMD9 AC079780.1-201ENST00000428259 207 ntBASIC4.31□□□□□ -1.72
COL17A1Q9UMD9 AC124916.1-201ENST00000444020 547 ntBASIC4.31□□□□□ -1.72
COL17A1Q9UMD9 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC4.31□□□□□ -1.72
COL17A1Q9UMD9 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.31□□□□□ -1.72
COL17A1Q9UMD9 RPS29P24-201ENST00000486345 171 ntBASIC4.31□□□□□ -1.72
COL17A1Q9UMD9 AK3P2-201ENST00000507976 429 ntBASIC4.31□□□□□ -1.72
COL17A1Q9UMD9 AC022616.8-201ENST00000533569 253 ntBASIC4.31□□□□□ -1.72
COL17A1Q9UMD9 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.31□□□□□ -1.72
COL17A1Q9UMD9 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC4.31□□□□□ -1.72
COL17A1Q9UMD9 MIR4644-201ENST00000579929 84 ntBASIC4.31□□□□□ -1.72
COL17A1Q9UMD9 MIR4648-201ENST00000580107 72 ntBASIC4.31□□□□□ -1.72
COL17A1Q9UMD9 AC108081.1-201ENST00000604358 221 ntBASIC4.31□□□□□ -1.72
COL17A1Q9UMD9 AC008555.8-201ENST00000623602 2168 ntBASIC4.31□□□□□ -1.72
COL17A1Q9UMD9 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL17A1Q9UMD9 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.31□□□□□ -1.72
COL17A1Q9UMD9 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
COL17A1Q9UMD9 Y_RNA.217-201ENST00000364214 105 ntBASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 RNU6-335P-201ENST00000364563 113 ntBASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 RNU6-211P-201ENST00000384047 107 ntBASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 RN7SKP210-201ENST00000459176 261 ntBASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 Y_RNA.641-201ENST00000459414 105 ntBASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 RPS26P21-201ENST00000475397 348 ntBASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 NACAP3-201ENST00000552100 481 ntBASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 snoU18.1-201ENST00000629629 71 ntBASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 RNU6-199P-201ENST00000362954 107 ntBASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 RNU6-899P-201ENST00000363947 107 ntBASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 SNORA46.1-201ENST00000391069 153 ntBASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 FABP5P15-201ENST00000453566 214 ntBASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 AC114501.3-201ENST00000453648 164 ntTSL 5 BASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 AC010285.1-201ENST00000470580 392 ntBASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 RNA5SP217-201ENST00000515959 91 ntBASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 RNU6-1256P-201ENST00000516539 103 ntBASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 Y_RNA.712-201ENST00000517011 92 ntBASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC4.3□□□□□ -1.72
COL17A1Q9UMD9 GABRG2-229ENST00000641017 3628 ntBASIC4.29□□□□□ -1.72
COL17A1Q9UMD9 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC4.29□□□□□ -1.72
COL17A1Q9UMD9 Y_RNA.172-201ENST00000363765 102 ntBASIC4.29□□□□□ -1.72
COL17A1Q9UMD9 SNORD14B-201ENST00000364533 90 ntBASIC4.29□□□□□ -1.72
COL17A1Q9UMD9 RNU6-741P-201ENST00000383889 107 ntBASIC4.29□□□□□ -1.72
COL17A1Q9UMD9 RNU6-573P-201ENST00000383938 106 ntBASIC4.29□□□□□ -1.72
COL17A1Q9UMD9 MIR10A-201ENST00000385043 110 ntBASIC4.29□□□□□ -1.72
COL17A1Q9UMD9 RNU5A-5P-201ENST00000411054 116 ntBASIC4.29□□□□□ -1.72
COL17A1Q9UMD9 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.29□□□□□ -1.72
COL17A1Q9UMD9 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC4.29□□□□□ -1.72
COL17A1Q9UMD9 RNU6-612P-201ENST00000516909 102 ntBASIC4.29□□□□□ -1.72
COL17A1Q9UMD9 Y_RNA.706-201ENST00000516933 99 ntBASIC4.29□□□□□ -1.72
COL17A1Q9UMD9 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC4.29□□□□□ -1.72
COL17A1Q9UMD9 AC090049.2-201ENST00000550377 109 ntBASIC4.29□□□□□ -1.72
COL17A1Q9UMD9 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC4.29□□□□□ -1.72
COL17A1Q9UMD9 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC4.29□□□□□ -1.72
COL17A1Q9UMD9 AP003481.1-201ENST00000637808 351 ntTSL 5 BASIC4.29□□□□□ -1.72
COL17A1Q9UMD9 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL17A1Q9UMD9 RGS22-214ENST00000523287 4033 ntAPPRIS ALT2 TSL 2 BASIC4.29□□□□□ -1.72
COL17A1Q9UMD9 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
COL17A1Q9UMD9 Z73965.1-201ENST00000623412 2297 ntBASIC4.28□□□□□ -1.72
COL17A1Q9UMD9 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL17A1Q9UMD9 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
COL17A1Q9UMD9 MBNL1-211ENST00000463374 5092 ntAPPRIS P4 TSL 1 (best) BASIC4.28□□□□□ -1.72
COL17A1Q9UMD9 ATP13A3-203ENST00000439040 7720 ntAPPRIS P1 TSL 5 BASIC4.28□□□□□ -1.72
COL17A1Q9UMD9 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC4.28□□□□□ -1.72
COL17A1Q9UMD9 Y_RNA.121-201ENST00000363309 113 ntBASIC4.28□□□□□ -1.72
COL17A1Q9UMD9 RNU6-275P-201ENST00000364910 107 ntBASIC4.28□□□□□ -1.72
COL17A1Q9UMD9 RNU6-460P-201ENST00000391158 108 ntBASIC4.28□□□□□ -1.72
COL17A1Q9UMD9 AC007919.1-201ENST00000429380 217 ntBASIC4.28□□□□□ -1.72
COL17A1Q9UMD9 UQCRHP3-201ENST00000451503 251 ntBASIC4.28□□□□□ -1.72
COL17A1Q9UMD9 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC4.28□□□□□ -1.72
COL17A1Q9UMD9 RNU7-197P-201ENST00000458836 62 ntBASIC4.28□□□□□ -1.72
COL17A1Q9UMD9 RN7SL330P-201ENST00000469709 307 ntBASIC4.28□□□□□ -1.72
COL17A1Q9UMD9 RPL23AP45-201ENST00000476406 468 ntBASIC4.28□□□□□ -1.72
COL17A1Q9UMD9 RNU6-377P-201ENST00000515965 102 ntBASIC4.28□□□□□ -1.72
COL17A1Q9UMD9 MAL2-206ENST00000522187 547 ntTSL 4 BASIC4.28□□□□□ -1.72
COL17A1Q9UMD9 AC104581.2-201ENST00000572227 430 ntBASIC4.28□□□□□ -1.72
COL17A1Q9UMD9 AL161629.2-201ENST00000615347 275 ntBASIC4.28□□□□□ -1.72
COL17A1Q9UMD9 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC4.27□□□□□ -1.73
COL17A1Q9UMD9 Y_RNA.164-201ENST00000363709 102 ntBASIC4.27□□□□□ -1.73
COL17A1Q9UMD9 RNU6-384P-201ENST00000364900 104 ntBASIC4.27□□□□□ -1.73
COL17A1Q9UMD9 RNU6-245P-201ENST00000384020 107 ntBASIC4.27□□□□□ -1.73
COL17A1Q9UMD9 AC079354.2-201ENST00000453523 154 ntBASIC4.27□□□□□ -1.73
COL17A1Q9UMD9 RPL23AP3-201ENST00000453844 468 ntBASIC4.27□□□□□ -1.73
COL17A1Q9UMD9 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC4.27□□□□□ -1.73
COL17A1Q9UMD9 snoU13.4-201ENST00000458916 104 ntBASIC4.27□□□□□ -1.73
COL17A1Q9UMD9 CKS1BP2-201ENST00000497342 240 ntBASIC4.27□□□□□ -1.73
COL17A1Q9UMD9 Y_RNA.797-201ENST00000515977 94 ntBASIC4.27□□□□□ -1.73
COL17A1Q9UMD9 RNA5SP458-201ENST00000516188 119 ntBASIC4.27□□□□□ -1.73
COL17A1Q9UMD9 RNU2-56P-201ENST00000516826 190 ntBASIC4.27□□□□□ -1.73
COL17A1Q9UMD9 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC4.27□□□□□ -1.73
COL17A1Q9UMD9 SNRPGP15-201ENST00000600149 222 ntBASIC4.27□□□□□ -1.73
COL17A1Q9UMD9 AC025521.1-201ENST00000621624 286 ntBASIC4.27□□□□□ -1.73
COL17A1Q9UMD9 AC068647.2-201ENST00000637380 353 ntBASIC4.27□□□□□ -1.73
COL17A1Q9UMD9 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms