Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AC027335.2-201ENST00000624030 375 ntBASIC0.84□□□□□ -2.28
USP42Q9H9J4 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.84□□□□□ -2.28
USP42Q9H9J4 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC0.83□□□□□ -2.28
USP42Q9H9J4 AC092268.1-201ENST00000342691 405 ntBASIC0.83□□□□□ -2.28
USP42Q9H9J4 RNA5SP499-201ENST00000363982 119 ntBASIC0.83□□□□□ -2.28
USP42Q9H9J4 MIR454-201ENST00000390180 115 ntBASIC0.83□□□□□ -2.28
USP42Q9H9J4 SNORA16.2-201ENST00000390991 127 ntBASIC0.83□□□□□ -2.28
USP42Q9H9J4 AL117342.1-201ENST00000404861 406 ntBASIC0.83□□□□□ -2.28
USP42Q9H9J4 MTND3P17-201ENST00000416968 344 ntBASIC0.83□□□□□ -2.28
USP42Q9H9J4 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC0.83□□□□□ -2.28
USP42Q9H9J4 AC060773.1-201ENST00000421698 310 ntBASIC0.83□□□□□ -2.28
USP42Q9H9J4 AC010099.3-201ENST00000423896 409 ntBASIC0.83□□□□□ -2.28
USP42Q9H9J4 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC0.83□□□□□ -2.28
USP42Q9H9J4 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC0.83□□□□□ -2.28
USP42Q9H9J4 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC0.83□□□□□ -2.28
USP42Q9H9J4 USP9YP28-201ENST00000435142 589 ntBASIC0.83□□□□□ -2.28
USP42Q9H9J4 ZNF736P12Y-201ENST00000443152 1243 ntBASIC0.83□□□□□ -2.28
USP42Q9H9J4 AC016632.1-201ENST00000503994 196 ntBASIC0.83□□□□□ -2.28
USP42Q9H9J4 NAF1-205ENST00000509434 385 ntTSL 3 BASIC0.83□□□□□ -2.28
USP42Q9H9J4 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.83□□□□□ -2.28
USP42Q9H9J4 RNU6-1129P-201ENST00000515964 104 ntBASIC0.83□□□□□ -2.28
USP42Q9H9J4 RNU2-69P-201ENST00000516061 100 ntBASIC0.83□□□□□ -2.28
USP42Q9H9J4 RNU6-410P-201ENST00000517006 107 ntBASIC0.83□□□□□ -2.28
USP42Q9H9J4 AC103996.1-201ENST00000555468 102 ntBASIC0.83□□□□□ -2.28
USP42Q9H9J4 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.83□□□□□ -2.28
USP42Q9H9J4 Z99289.3-201ENST00000605586 594 ntBASIC0.83□□□□□ -2.28
USP42Q9H9J4 AC008945.2-201ENST00000606056 604 ntBASIC0.83□□□□□ -2.28
USP42Q9H9J4 AC008250.2-201ENST00000615261 205 ntBASIC0.83□□□□□ -2.28
USP42Q9H9J4 AC022418.1-201ENST00000624118 445 ntBASIC0.83□□□□□ -2.28
USP42Q9H9J4 SNORA43.4-201ENST00000629559 138 ntBASIC0.83□□□□□ -2.28
USP42Q9H9J4 MIR924-201ENST00000638017 53 ntBASIC0.83□□□□□ -2.28
USP42Q9H9J4 RNU1-124P-201ENST00000363861 145 ntBASIC0.82□□□□□ -2.28
USP42Q9H9J4 RNU6-827P-201ENST00000365553 106 ntBASIC0.82□□□□□ -2.28
USP42Q9H9J4 MIR146A-201ENST00000385201 99 ntBASIC0.82□□□□□ -2.28
USP42Q9H9J4 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC0.82□□□□□ -2.28
USP42Q9H9J4 GPR143P-201ENST00000434155 205 ntBASIC0.82□□□□□ -2.28
USP42Q9H9J4 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0.82□□□□□ -2.28
USP42Q9H9J4 RPS29P15-201ENST00000458329 171 ntBASIC0.82□□□□□ -2.28
USP42Q9H9J4 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC0.82□□□□□ -2.28
USP42Q9H9J4 AK3P2-201ENST00000507976 429 ntBASIC0.82□□□□□ -2.28
USP42Q9H9J4 RNU6-496P-201ENST00000516145 99 ntBASIC0.82□□□□□ -2.28
USP42Q9H9J4 AGGF1P4-201ENST00000568249 801 ntBASIC0.82□□□□□ -2.28
USP42Q9H9J4 AC008088.1-201ENST00000580993 280 ntBASIC0.82□□□□□ -2.28
USP42Q9H9J4 Z98751.3-201ENST00000604447 521 ntBASIC0.82□□□□□ -2.28
USP42Q9H9J4 AC002044.1-201ENST00000606707 158 ntBASIC0.82□□□□□ -2.28
USP42Q9H9J4 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.81□□□□□ -2.28
USP42Q9H9J4 RNU1-76P-201ENST00000362903 159 ntBASIC0.81□□□□□ -2.28
USP42Q9H9J4 RNU6-1127P-201ENST00000384580 107 ntBASIC0.81□□□□□ -2.28
USP42Q9H9J4 RNU6-297P-201ENST00000384636 107 ntBASIC0.81□□□□□ -2.28
USP42Q9H9J4 Y_RNA.560-201ENST00000384689 102 ntBASIC0.81□□□□□ -2.28
USP42Q9H9J4 SNORD70.1-201ENST00000391007 85 ntBASIC0.81□□□□□ -2.28
USP42Q9H9J4 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC0.81□□□□□ -2.28
USP42Q9H9J4 Z99497.1-201ENST00000421282 135 ntBASIC0.81□□□□□ -2.28
USP42Q9H9J4 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC0.81□□□□□ -2.28
USP42Q9H9J4 RPL31P35-201ENST00000431058 377 ntBASIC0.81□□□□□ -2.28
USP42Q9H9J4 AC079781.2-201ENST00000446424 169 ntBASIC0.81□□□□□ -2.28
USP42Q9H9J4 RNU6-567P-201ENST00000516746 107 ntBASIC0.81□□□□□ -2.28
USP42Q9H9J4 AP001372.4-201ENST00000524889 472 ntBASIC0.81□□□□□ -2.28
USP42Q9H9J4 DEFB131C-201ENST00000528817 165 ntBASIC0.81□□□□□ -2.28
USP42Q9H9J4 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC0.81□□□□□ -2.28
USP42Q9H9J4 MIR4661-201ENST00000582720 75 ntBASIC0.81□□□□□ -2.28
USP42Q9H9J4 AC091805.2-201ENST00000603848 235 ntBASIC0.81□□□□□ -2.28
USP42Q9H9J4 AC092354.1-201ENST00000606057 376 ntBASIC0.81□□□□□ -2.28
USP42Q9H9J4 MIR330-201ENST00000362196 94 ntBASIC0.8□□□□□ -2.28
USP42Q9H9J4 RNU6-282P-201ENST00000365357 103 ntBASIC0.8□□□□□ -2.28
USP42Q9H9J4 RNU6-108P-201ENST00000365558 107 ntBASIC0.8□□□□□ -2.28
USP42Q9H9J4 RNU6-393P-201ENST00000384475 107 ntBASIC0.8□□□□□ -2.28
USP42Q9H9J4 AC098934.3-201ENST00000430450 190 ntBASIC0.8□□□□□ -2.28
USP42Q9H9J4 AC002486.1-201ENST00000435098 391 ntBASIC0.8□□□□□ -2.28
USP42Q9H9J4 AC092628.1-201ENST00000436250 252 ntBASIC0.8□□□□□ -2.28
USP42Q9H9J4 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC0.8□□□□□ -2.28
USP42Q9H9J4 PRPS1P1-201ENST00000445305 876 ntBASIC0.8□□□□□ -2.28
USP42Q9H9J4 C1DP4-201ENST00000455429 424 ntBASIC0.8□□□□□ -2.28
USP42Q9H9J4 RNU7-182P-201ENST00000459009 62 ntBASIC0.8□□□□□ -2.28
USP42Q9H9J4 AC079382.1-201ENST00000493346 557 ntBASIC0.8□□□□□ -2.28
USP42Q9H9J4 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC0.8□□□□□ -2.28
USP42Q9H9J4 HMGN1P12-201ENST00000499125 195 ntBASIC0.8□□□□□ -2.28
USP42Q9H9J4 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC0.8□□□□□ -2.28
USP42Q9H9J4 LRRC34P2-201ENST00000514850 553 ntBASIC0.8□□□□□ -2.28
USP42Q9H9J4 SNORD116-28-201ENST00000516123 91 ntBASIC0.8□□□□□ -2.28
USP42Q9H9J4 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC0.8□□□□□ -2.28
USP42Q9H9J4 MTCO3P23-201ENST00000561363 289 ntBASIC0.8□□□□□ -2.28
USP42Q9H9J4 MIR4703-201ENST00000577728 79 ntBASIC0.8□□□□□ -2.28
USP42Q9H9J4 AC090616.2-202ENST00000584248 222 ntBASIC0.8□□□□□ -2.28
USP42Q9H9J4 Z84480.1-201ENST00000605131 311 ntBASIC0.8□□□□□ -2.28
USP42Q9H9J4 RPL17P51-201ENST00000605218 238 ntBASIC0.8□□□□□ -2.28
USP42Q9H9J4 AC009994.1-201ENST00000606889 253 ntBASIC0.8□□□□□ -2.28
USP42Q9H9J4 AC027449.1-201ENST00000608890 407 ntBASIC0.8□□□□□ -2.28
USP42Q9H9J4 AC243829.3-201ENST00000622177 108 ntBASIC0.8□□□□□ -2.28
USP42Q9H9J4 AC091925.1-201ENST00000623204 462 ntBASIC0.8□□□□□ -2.28
USP42Q9H9J4 SEPT14P19-203ENST00000633205 211 ntBASIC0.8□□□□□ -2.28
USP42Q9H9J4 RNU6-1093P-201ENST00000391194 107 ntBASIC0.79□□□□□ -2.28
USP42Q9H9J4 RNU4-46P-201ENST00000410818 138 ntBASIC0.79□□□□□ -2.28
USP42Q9H9J4 AC090960.1-201ENST00000421072 306 ntBASIC0.79□□□□□ -2.28
USP42Q9H9J4 CYCSP46-201ENST00000423569 204 ntBASIC0.79□□□□□ -2.28
USP42Q9H9J4 AL358176.2-201ENST00000425769 204 ntBASIC0.79□□□□□ -2.28
USP42Q9H9J4 MTND5P15-201ENST00000434246 349 ntBASIC0.79□□□□□ -2.28
USP42Q9H9J4 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC0.79□□□□□ -2.28
USP42Q9H9J4 RNU7-125P-201ENST00000458760 62 ntBASIC0.79□□□□□ -2.28
USP42Q9H9J4 AC008628.2-201ENST00000502605 298 ntBASIC0.79□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms