Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 TCL6_2.1-201ENST00000615162 119 ntBASIC1.5□□□□□ -2.17
VPS35Q96QK1 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.5□□□□□ -2.17
VPS35Q96QK1 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.5□□□□□ -2.17
VPS35Q96QK1 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.5□□□□□ -2.17
VPS35Q96QK1 AP000648.3-201ENST00000623539 4507 ntBASIC1.49□□□□□ -2.17
VPS35Q96QK1 RNU6-414P-201ENST00000363705 104 ntBASIC1.49□□□□□ -2.17
VPS35Q96QK1 RNA5SP99-201ENST00000364020 114 ntBASIC1.49□□□□□ -2.17
VPS35Q96QK1 Y_RNA.559-201ENST00000384686 107 ntBASIC1.49□□□□□ -2.17
VPS35Q96QK1 MIR520A-201ENST00000384862 85 ntBASIC1.49□□□□□ -2.17
VPS35Q96QK1 MIR549A-201ENST00000385268 96 ntBASIC1.49□□□□□ -2.17
VPS35Q96QK1 MIR450B-201ENST00000401182 78 ntBASIC1.49□□□□□ -2.17
VPS35Q96QK1 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.49□□□□□ -2.17
VPS35Q96QK1 AC245047.4-201ENST00000433189 144 ntBASIC1.49□□□□□ -2.17
VPS35Q96QK1 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.49□□□□□ -2.17
VPS35Q96QK1 snoU13.30-201ENST00000458951 104 ntBASIC1.49□□□□□ -2.17
VPS35Q96QK1 HMGN1P13-201ENST00000505795 138 ntBASIC1.49□□□□□ -2.17
VPS35Q96QK1 AC067942.3-201ENST00000512025 362 ntBASIC1.49□□□□□ -2.17
VPS35Q96QK1 RNU6-1041P-201ENST00000516254 102 ntBASIC1.49□□□□□ -2.17
VPS35Q96QK1 RNU2-34P-201ENST00000516534 121 ntBASIC1.49□□□□□ -2.17
VPS35Q96QK1 Y_RNA.704-201ENST00000516851 102 ntBASIC1.49□□□□□ -2.17
VPS35Q96QK1 SNORA31.24-201ENST00000517232 57 ntBASIC1.49□□□□□ -2.17
VPS35Q96QK1 AC026371.1-201ENST00000551867 419 ntBASIC1.49□□□□□ -2.17
VPS35Q96QK1 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC1.49□□□□□ -2.17
VPS35Q96QK1 AL162413.1-201ENST00000603198 110 ntBASIC1.49□□□□□ -2.17
VPS35Q96QK1 AL359697.1-201ENST00000624879 587 ntBASIC1.49□□□□□ -2.17
VPS35Q96QK1 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
VPS35Q96QK1 RNU1-96P-201ENST00000364163 162 ntBASIC1.48□□□□□ -2.17
VPS35Q96QK1 U8.10-201ENST00000384260 133 ntBASIC1.48□□□□□ -2.17
VPS35Q96QK1 RNU6-784P-201ENST00000384330 106 ntBASIC1.48□□□□□ -2.17
VPS35Q96QK1 RNU6-955P-201ENST00000410497 104 ntBASIC1.48□□□□□ -2.17
VPS35Q96QK1 AL513185.2-201ENST00000425543 193 ntBASIC1.48□□□□□ -2.17
VPS35Q96QK1 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.48□□□□□ -2.17
VPS35Q96QK1 OR2AQ1P-201ENST00000451972 200 ntBASIC1.48□□□□□ -2.17
VPS35Q96QK1 RNU6-237P-201ENST00000515985 71 ntBASIC1.48□□□□□ -2.17
VPS35Q96QK1 Y_RNA.665-201ENST00000516177 98 ntBASIC1.48□□□□□ -2.17
VPS35Q96QK1 RNA5SP437-201ENST00000517249 129 ntBASIC1.48□□□□□ -2.17
VPS35Q96QK1 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.48□□□□□ -2.17
VPS35Q96QK1 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC1.48□□□□□ -2.17
VPS35Q96QK1 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.48□□□□□ -2.17
VPS35Q96QK1 MIR4303-201ENST00000581299 66 ntBASIC1.48□□□□□ -2.17
VPS35Q96QK1 AC010525.2-201ENST00000590920 195 ntBASIC1.48□□□□□ -2.17
VPS35Q96QK1 AP000907.4-201ENST00000604143 237 ntBASIC1.48□□□□□ -2.17
VPS35Q96QK1 AL645939.4-201ENST00000604495 135 ntBASIC1.48□□□□□ -2.17
VPS35Q96QK1 AC092954.2-201ENST00000609103 430 ntBASIC1.48□□□□□ -2.17
VPS35Q96QK1 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.48□□□□□ -2.17
VPS35Q96QK1 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
VPS35Q96QK1 AC010615.1-201ENST00000594254 1764 ntBASIC1.47□□□□□ -2.17
VPS35Q96QK1 SNORD113-7-201ENST00000363762 77 ntBASIC1.47□□□□□ -2.17
VPS35Q96QK1 RNU4-13P-201ENST00000364019 141 ntBASIC1.47□□□□□ -2.17
VPS35Q96QK1 RNU1-42P-201ENST00000364033 160 ntBASIC1.47□□□□□ -2.17
VPS35Q96QK1 RNU6-483P-201ENST00000384088 108 ntBASIC1.47□□□□□ -2.17
VPS35Q96QK1 AL117342.1-201ENST00000404861 406 ntBASIC1.47□□□□□ -2.17
VPS35Q96QK1 MIR1304-201ENST00000408243 91 ntBASIC1.47□□□□□ -2.17
VPS35Q96QK1 MIR1267-201ENST00000408723 78 ntBASIC1.47□□□□□ -2.17
VPS35Q96QK1 AC004866.1-201ENST00000411748 78 ntBASIC1.47□□□□□ -2.17
VPS35Q96QK1 EBAG9P1-201ENST00000418955 543 ntBASIC1.47□□□□□ -2.17
VPS35Q96QK1 AC060773.1-201ENST00000421698 310 ntBASIC1.47□□□□□ -2.17
VPS35Q96QK1 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC1.47□□□□□ -2.17
VPS35Q96QK1 HSPE1P9-201ENST00000440046 311 ntBASIC1.47□□□□□ -2.17
VPS35Q96QK1 MTND2P22-201ENST00000444325 1033 ntBASIC1.47□□□□□ -2.17
VPS35Q96QK1 MTND1P1-201ENST00000445453 368 ntBASIC1.47□□□□□ -2.17
VPS35Q96QK1 AC009237.7-201ENST00000447357 229 ntBASIC1.47□□□□□ -2.17
VPS35Q96QK1 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.47□□□□□ -2.17
VPS35Q96QK1 MTCO3P8-201ENST00000453691 755 ntBASIC1.47□□□□□ -2.17
VPS35Q96QK1 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.47□□□□□ -2.17
VPS35Q96QK1 snoU13.9-201ENST00000458927 103 ntBASIC1.47□□□□□ -2.17
VPS35Q96QK1 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.47□□□□□ -2.17
VPS35Q96QK1 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
VPS35Q96QK1 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC1.47□□□□□ -2.17
VPS35Q96QK1 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.47□□□□□ -2.17
VPS35Q96QK1 MIR3976-201ENST00000606807 139 ntBASIC1.47□□□□□ -2.17
VPS35Q96QK1 AL133215.3-201ENST00000609801 448 ntBASIC1.47□□□□□ -2.17
VPS35Q96QK1 DISC2.1-201ENST00000612827 205 ntBASIC1.47□□□□□ -2.17
VPS35Q96QK1 MTND5P10-201ENST00000603719 1809 ntBASIC1.47□□□□□ -2.17
VPS35Q96QK1 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
VPS35Q96QK1 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
VPS35Q96QK1 BX322639.1-202ENST00000423987 2213 ntBASIC1.46□□□□□ -2.18
VPS35Q96QK1 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
VPS35Q96QK1 RNU6-254P-201ENST00000363377 107 ntBASIC1.46□□□□□ -2.18
VPS35Q96QK1 RNU6-1019P-201ENST00000364424 107 ntBASIC1.46□□□□□ -2.18
VPS35Q96QK1 Y_RNA.372-201ENST00000365599 102 ntBASIC1.46□□□□□ -2.18
VPS35Q96QK1 RNU6-128P-201ENST00000383976 107 ntBASIC1.46□□□□□ -2.18
VPS35Q96QK1 RNU6-908P-201ENST00000410160 94 ntBASIC1.46□□□□□ -2.18
VPS35Q96QK1 RNU2-7P-201ENST00000410794 178 ntBASIC1.46□□□□□ -2.18
VPS35Q96QK1 NDUFA5P4-201ENST00000436704 385 ntBASIC1.46□□□□□ -2.18
VPS35Q96QK1 Z83846.1-201ENST00000446798 265 ntBASIC1.46□□□□□ -2.18
VPS35Q96QK1 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC1.46□□□□□ -2.18
VPS35Q96QK1 AC114982.1-201ENST00000469402 321 ntBASIC1.46□□□□□ -2.18
VPS35Q96QK1 AC023790.1-201ENST00000482174 347 ntBASIC1.46□□□□□ -2.18
VPS35Q96QK1 RPL36AP21-201ENST00000490372 323 ntBASIC1.46□□□□□ -2.18
VPS35Q96QK1 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.46□□□□□ -2.18
VPS35Q96QK1 AC011406.1-201ENST00000512440 370 ntBASIC1.46□□□□□ -2.18
VPS35Q96QK1 MTND1P35-201ENST00000526739 508 ntBASIC1.46□□□□□ -2.18
VPS35Q96QK1 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC1.46□□□□□ -2.18
VPS35Q96QK1 AL353149.1-201ENST00000610667 244 ntBASIC1.46□□□□□ -2.18
VPS35Q96QK1 AC048344.4-201ENST00000619744 527 ntBASIC1.46□□□□□ -2.18
VPS35Q96QK1 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
VPS35Q96QK1 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
VPS35Q96QK1 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.45□□□□□ -2.18
VPS35Q96QK1 RNU6-1235P-201ENST00000384559 107 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms