Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC005562.2-201ENST00000618264 111 ntBASIC0.27□□□□□ -2.37
CCDC42Q96M95 MIR6513-201ENST00000621188 64 ntBASIC0.27□□□□□ -2.37
CCDC42Q96M95 RNA5SP247-201ENST00000411181 105 ntBASIC0.26□□□□□ -2.37
CCDC42Q96M95 MTCO2P12-201ENST00000427426 682 ntBASIC0.26□□□□□ -2.37
CCDC42Q96M95 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC0.26□□□□□ -2.37
CCDC42Q96M95 AK3P2-201ENST00000507976 429 ntBASIC0.26□□□□□ -2.37
CCDC42Q96M95 RNU6-496P-201ENST00000516145 99 ntBASIC0.26□□□□□ -2.37
CCDC42Q96M95 AC091805.2-201ENST00000603848 235 ntBASIC0.26□□□□□ -2.37
CCDC42Q96M95 AC093913.1-201ENST00000614178 329 ntBASIC0.26□□□□□ -2.37
CCDC42Q96M95 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC0.26□□□□□ -2.37
CCDC42Q96M95 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC0.26□□□□□ -2.37
CCDC42Q96M95 UGP2-230ENST00000626380 276 ntTSL 5 BASIC0.26□□□□□ -2.37
CCDC42Q96M95 RNU6-1303P-201ENST00000364841 107 ntBASIC0.25□□□□□ -2.37
CCDC42Q96M95 SNORD115-7-201ENST00000365306 82 ntBASIC0.25□□□□□ -2.37
CCDC42Q96M95 SNORA2.2-201ENST00000365473 135 ntBASIC0.25□□□□□ -2.37
CCDC42Q96M95 RNU1-119P-201ENST00000391122 165 ntBASIC0.25□□□□□ -2.37
CCDC42Q96M95 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.25□□□□□ -2.37
CCDC42Q96M95 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC0.25□□□□□ -2.37
CCDC42Q96M95 MTND1P20-201ENST00000430341 950 ntBASIC0.25□□□□□ -2.37
CCDC42Q96M95 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC0.25□□□□□ -2.37
CCDC42Q96M95 AL031313.1-201ENST00000448435 256 ntBASIC0.25□□□□□ -2.37
CCDC42Q96M95 AC245047.8-201ENST00000456455 284 ntBASIC0.25□□□□□ -2.37
CCDC42Q96M95 RNU6-917P-201ENST00000516294 104 ntBASIC0.25□□□□□ -2.37
CCDC42Q96M95 AP003181.2-201ENST00000528941 181 ntBASIC0.25□□□□□ -2.37
CCDC42Q96M95 AC004584.2-201ENST00000570407 410 ntBASIC0.25□□□□□ -2.37
CCDC42Q96M95 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC0.25□□□□□ -2.37
CCDC42Q96M95 MIR4778-201ENST00000577635 80 ntBASIC0.25□□□□□ -2.37
CCDC42Q96M95 MIR5093-201ENST00000583199 100 ntBASIC0.25□□□□□ -2.37
CCDC42Q96M95 AL359999.1-201ENST00000604513 294 ntBASIC0.25□□□□□ -2.37
CCDC42Q96M95 RNU4-68P-201ENST00000364314 141 ntBASIC0.24□□□□□ -2.37
CCDC42Q96M95 SNORD89-201ENST00000390981 114 ntBASIC0.24□□□□□ -2.37
CCDC42Q96M95 MRPL42P2-201ENST00000403169 426 ntBASIC0.24□□□□□ -2.37
CCDC42Q96M95 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.24□□□□□ -2.37
CCDC42Q96M95 MTND3P17-201ENST00000416968 344 ntBASIC0.24□□□□□ -2.37
CCDC42Q96M95 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC0.24□□□□□ -2.37
CCDC42Q96M95 MTATP6P16-201ENST00000434543 526 ntBASIC0.24□□□□□ -2.37
CCDC42Q96M95 AC074290.1-201ENST00000448883 135 ntBASIC0.24□□□□□ -2.37
CCDC42Q96M95 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC0.24□□□□□ -2.37
CCDC42Q96M95 AC116562.3-201ENST00000506136 177 ntBASIC0.24□□□□□ -2.37
CCDC42Q96M95 RNU6-1223P-201ENST00000517124 104 ntBASIC0.24□□□□□ -2.37
CCDC42Q96M95 AC106038.2-201ENST00000520706 568 ntBASIC0.24□□□□□ -2.37
CCDC42Q96M95 AC068587.5-201ENST00000528506 175 ntBASIC0.24□□□□□ -2.37
CCDC42Q96M95 AP002001.1-203ENST00000534002 267 ntBASIC0.24□□□□□ -2.37
CCDC42Q96M95 AC026470.2-201ENST00000561492 181 ntBASIC0.24□□□□□ -2.37
CCDC42Q96M95 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC0.24□□□□□ -2.37
CCDC42Q96M95 MTND1P15-201ENST00000579262 949 ntBASIC0.24□□□□□ -2.37
CCDC42Q96M95 MIR3124-201ENST00000582636 67 ntBASIC0.24□□□□□ -2.37
CCDC42Q96M95 TCL6_2.1-201ENST00000615162 119 ntBASIC0.24□□□□□ -2.37
CCDC42Q96M95 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC0.24□□□□□ -2.37
CCDC42Q96M95 AC138649.3-201ENST00000622154 254 ntBASIC0.24□□□□□ -2.37
CCDC42Q96M95 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC0.24□□□□□ -2.37
CCDC42Q96M95 RNU6-715P-201ENST00000365204 103 ntBASIC0.23□□□□□ -2.37
CCDC42Q96M95 VTRNA1-3-201ENST00000365645 89 ntBASIC0.23□□□□□ -2.37
CCDC42Q96M95 RNU6-533P-201ENST00000384144 107 ntBASIC0.23□□□□□ -2.37
CCDC42Q96M95 RNU6-348P-201ENST00000384386 107 ntBASIC0.23□□□□□ -2.37
CCDC42Q96M95 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC0.23□□□□□ -2.37
CCDC42Q96M95 AC016909.1-201ENST00000415916 166 ntBASIC0.23□□□□□ -2.37
CCDC42Q96M95 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC0.23□□□□□ -2.37
CCDC42Q96M95 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC0.23□□□□□ -2.37
CCDC42Q96M95 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC0.23□□□□□ -2.37
CCDC42Q96M95 AC004386.2-201ENST00000441858 148 ntBASIC0.23□□□□□ -2.37
CCDC42Q96M95 EXOSC3P1-201ENST00000448649 500 ntBASIC0.23□□□□□ -2.37
CCDC42Q96M95 AC022493.2-201ENST00000506122 481 ntBASIC0.23□□□□□ -2.37
CCDC42Q96M95 AC025465.4-201ENST00000513422 638 ntBASIC0.23□□□□□ -2.37
CCDC42Q96M95 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC0.23□□□□□ -2.37
CCDC42Q96M95 AP003168.1-201ENST00000530091 307 ntBASIC0.23□□□□□ -2.37
CCDC42Q96M95 AC103996.1-201ENST00000555468 102 ntBASIC0.23□□□□□ -2.37
CCDC42Q96M95 MIR5006-201ENST00000583027 110 ntBASIC0.23□□□□□ -2.37
CCDC42Q96M95 AL121992.2-201ENST00000606262 256 ntBASIC0.23□□□□□ -2.37
CCDC42Q96M95 AC097065.2-201ENST00000608159 533 ntBASIC0.23□□□□□ -2.37
CCDC42Q96M95 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.23□□□□□ -2.37
CCDC42Q96M95 RNU1-133P-201ENST00000364867 167 ntBASIC0.22□□□□□ -2.37
CCDC42Q96M95 CDK8P2-201ENST00000415020 547 ntBASIC0.22□□□□□ -2.37
CCDC42Q96M95 MTCO2P21-201ENST00000419780 677 ntBASIC0.22□□□□□ -2.37
CCDC42Q96M95 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC0.22□□□□□ -2.37
CCDC42Q96M95 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC0.22□□□□□ -2.37
CCDC42Q96M95 AC027419.1-201ENST00000522976 328 ntBASIC0.22□□□□□ -2.37
CCDC42Q96M95 SUB1P2-201ENST00000556401 297 ntBASIC0.22□□□□□ -2.37
CCDC42Q96M95 AL078603.1-201ENST00000603824 313 ntBASIC0.22□□□□□ -2.37
CCDC42Q96M95 AL391903.3-201ENST00000612158 163 ntBASIC0.22□□□□□ -2.37
CCDC42Q96M95 AC104010.1-201ENST00000616889 150 ntBASIC0.22□□□□□ -2.37
CCDC42Q96M95 AC013437.2-201ENST00000639587 677 ntBASIC0.22□□□□□ -2.37
CCDC42Q96M95 AC090625.1-201ENST00000357130 210 ntBASIC0.21□□□□□ -2.38
CCDC42Q96M95 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.21□□□□□ -2.38
CCDC42Q96M95 Y_RNA.224-201ENST00000364308 111 ntBASIC0.21□□□□□ -2.38
CCDC42Q96M95 RNU6-827P-201ENST00000365553 106 ntBASIC0.21□□□□□ -2.38
CCDC42Q96M95 MIR499A-201ENST00000384903 122 ntBASIC0.21□□□□□ -2.38
CCDC42Q96M95 MIR586-201ENST00000385035 97 ntBASIC0.21□□□□□ -2.38
CCDC42Q96M95 RNU6-550P-201ENST00000391057 101 ntBASIC0.21□□□□□ -2.38
CCDC42Q96M95 RNU6-1000P-201ENST00000391066 106 ntBASIC0.21□□□□□ -2.38
CCDC42Q96M95 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.21□□□□□ -2.38
CCDC42Q96M95 RNU6-57P-201ENST00000411348 103 ntBASIC0.21□□□□□ -2.38
CCDC42Q96M95 AC005002.2-201ENST00000438228 269 ntBASIC0.21□□□□□ -2.38
CCDC42Q96M95 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.21□□□□□ -2.38
CCDC42Q96M95 AL031274.1-201ENST00000450334 232 ntBASIC0.21□□□□□ -2.38
CCDC42Q96M95 HSPE1P23-201ENST00000509838 286 ntBASIC0.21□□□□□ -2.38
CCDC42Q96M95 SNORA68.3-201ENST00000515906 83 ntBASIC0.21□□□□□ -2.38
CCDC42Q96M95 RNU6-1178P-201ENST00000516674 107 ntBASIC0.21□□□□□ -2.38
CCDC42Q96M95 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.21□□□□□ -2.38
CCDC42Q96M95 MIR4711-201ENST00000578274 70 ntBASIC0.21□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms