Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.89□□□□□ -2.27
LMX1AQ8TE12 RNU6-862P-201ENST00000362804 105 ntBASIC0.88□□□□□ -2.27
LMX1AQ8TE12 SNORD114-26-201ENST00000363543 72 ntBASIC0.88□□□□□ -2.27
LMX1AQ8TE12 Y_RNA.504-201ENST00000384481 104 ntBASIC0.88□□□□□ -2.27
LMX1AQ8TE12 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.88□□□□□ -2.27
LMX1AQ8TE12 ARL5AP1-201ENST00000418991 388 ntBASIC0.88□□□□□ -2.27
LMX1AQ8TE12 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC0.88□□□□□ -2.27
LMX1AQ8TE12 EIF1P1-201ENST00000421436 341 ntBASIC0.88□□□□□ -2.27
LMX1AQ8TE12 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC0.88□□□□□ -2.27
LMX1AQ8TE12 CETN4P-201ENST00000432407 469 ntBASIC0.88□□□□□ -2.27
LMX1AQ8TE12 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC0.88□□□□□ -2.27
LMX1AQ8TE12 RPS29P27-201ENST00000463711 170 ntBASIC0.88□□□□□ -2.27
LMX1AQ8TE12 RPS23P5-201ENST00000495419 428 ntBASIC0.88□□□□□ -2.27
LMX1AQ8TE12 AC079140.2-201ENST00000506193 142 ntBASIC0.88□□□□□ -2.27
LMX1AQ8TE12 RNU5F-4P-201ENST00000516581 114 ntBASIC0.88□□□□□ -2.27
LMX1AQ8TE12 DEFB131C-201ENST00000528817 165 ntBASIC0.88□□□□□ -2.27
LMX1AQ8TE12 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.88□□□□□ -2.27
LMX1AQ8TE12 CYP3A137P-201ENST00000562436 69 ntBASIC0.88□□□□□ -2.27
LMX1AQ8TE12 AC015688.6-201ENST00000577737 104 ntBASIC0.88□□□□□ -2.27
LMX1AQ8TE12 AC068790.2-201ENST00000602601 557 ntBASIC0.88□□□□□ -2.27
LMX1AQ8TE12 AC069114.2-201ENST00000604699 304 ntBASIC0.88□□□□□ -2.27
LMX1AQ8TE12 AL078604.3-201ENST00000615580 211 ntBASIC0.88□□□□□ -2.27
LMX1AQ8TE12 PVT1_3.1-201ENST00000620853 95 ntBASIC0.88□□□□□ -2.27
LMX1AQ8TE12 MPP6-209ENST00000625307 126 ntTSL 5 BASIC0.88□□□□□ -2.27
LMX1AQ8TE12 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.88□□□□□ -2.27
LMX1AQ8TE12 AL390237.1-201ENST00000404226 1415 ntBASIC0.88□□□□□ -2.27
LMX1AQ8TE12 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
LMX1AQ8TE12 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.87□□□□□ -2.27
LMX1AQ8TE12 Y_RNA.36-201ENST00000362602 112 ntBASIC0.87□□□□□ -2.27
LMX1AQ8TE12 MIR548B-201ENST00000385247 97 ntBASIC0.87□□□□□ -2.27
LMX1AQ8TE12 RNU2-9P-201ENST00000410194 145 ntBASIC0.87□□□□□ -2.27
LMX1AQ8TE12 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC0.87□□□□□ -2.27
LMX1AQ8TE12 EBAG9P1-201ENST00000418955 543 ntBASIC0.87□□□□□ -2.27
LMX1AQ8TE12 AC060773.1-201ENST00000421698 310 ntBASIC0.87□□□□□ -2.27
LMX1AQ8TE12 TOMM22P2-201ENST00000430735 237 ntBASIC0.87□□□□□ -2.27
LMX1AQ8TE12 AL135790.2-201ENST00000437701 267 ntBASIC0.87□□□□□ -2.27
LMX1AQ8TE12 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC0.87□□□□□ -2.27
LMX1AQ8TE12 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC0.87□□□□□ -2.27
LMX1AQ8TE12 OR2A41P-201ENST00000473586 105 ntBASIC0.87□□□□□ -2.27
LMX1AQ8TE12 MTND3P7-201ENST00000474435 343 ntBASIC0.87□□□□□ -2.27
LMX1AQ8TE12 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC0.87□□□□□ -2.27
LMX1AQ8TE12 RNA5SP481-201ENST00000516814 122 ntBASIC0.87□□□□□ -2.27
LMX1AQ8TE12 RNU6-430P-201ENST00000517078 107 ntBASIC0.87□□□□□ -2.27
LMX1AQ8TE12 HIF1AP1-201ENST00000553642 175 ntBASIC0.87□□□□□ -2.27
LMX1AQ8TE12 SUB1P2-201ENST00000556401 297 ntBASIC0.87□□□□□ -2.27
LMX1AQ8TE12 MIR5583-1-201ENST00000580941 59 ntBASIC0.87□□□□□ -2.27
LMX1AQ8TE12 RNU6-85P-201ENST00000605989 107 ntBASIC0.87□□□□□ -2.27
LMX1AQ8TE12 MIR8063-201ENST00000621930 81 ntBASIC0.87□□□□□ -2.27
LMX1AQ8TE12 AC121333.1-201ENST00000567488 2709 ntBASIC0.87□□□□□ -2.27
LMX1AQ8TE12 RNU11-5P-201ENST00000391216 129 ntBASIC0.86□□□□□ -2.27
LMX1AQ8TE12 RPS26P42-201ENST00000413485 326 ntBASIC0.86□□□□□ -2.27
LMX1AQ8TE12 MTND2P9-201ENST00000422293 931 ntBASIC0.86□□□□□ -2.27
LMX1AQ8TE12 AC073415.1-201ENST00000449240 153 ntBASIC0.86□□□□□ -2.27
LMX1AQ8TE12 RNU7-138P-201ENST00000459479 64 ntBASIC0.86□□□□□ -2.27
LMX1AQ8TE12 CCDC34P1-201ENST00000507441 517 ntBASIC0.86□□□□□ -2.27
LMX1AQ8TE12 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.86□□□□□ -2.27
LMX1AQ8TE12 RNU2-34P-201ENST00000516534 121 ntBASIC0.86□□□□□ -2.27
LMX1AQ8TE12 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC0.86□□□□□ -2.27
LMX1AQ8TE12 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC0.86□□□□□ -2.27
LMX1AQ8TE12 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC0.86□□□□□ -2.27
LMX1AQ8TE12 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.86□□□□□ -2.27
LMX1AQ8TE12 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC0.86□□□□□ -2.27
LMX1AQ8TE12 AC090517.1-201ENST00000569307 266 ntBASIC0.86□□□□□ -2.27
LMX1AQ8TE12 AL391840.1-201ENST00000571144 367 ntBASIC0.86□□□□□ -2.27
LMX1AQ8TE12 MIR4528-201ENST00000577763 90 ntBASIC0.86□□□□□ -2.27
LMX1AQ8TE12 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.86□□□□□ -2.27
LMX1AQ8TE12 U2.17-201ENST00000611454 95 ntBASIC0.86□□□□□ -2.27
LMX1AQ8TE12 HULC.1-201ENST00000612720 240 ntBASIC0.86□□□□□ -2.27
LMX1AQ8TE12 MESTIT1_1.1-201ENST00000618871 140 ntBASIC0.86□□□□□ -2.27
LMX1AQ8TE12 SRP54-214ENST00000630962 162 ntTSL 5 BASIC0.86□□□□□ -2.27
LMX1AQ8TE12 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.86□□□□□ -2.27
LMX1AQ8TE12 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.86□□□□□ -2.27
LMX1AQ8TE12 AC018630.2-201ENST00000534866 2403 ntBASIC0.85□□□□□ -2.27
LMX1AQ8TE12 RNU5B-2P-201ENST00000363036 113 ntBASIC0.85□□□□□ -2.27
LMX1AQ8TE12 Y_RNA.201-201ENST00000364052 96 ntBASIC0.85□□□□□ -2.27
LMX1AQ8TE12 RNU6-348P-201ENST00000384386 107 ntBASIC0.85□□□□□ -2.27
LMX1AQ8TE12 MIR300-201ENST00000401138 83 ntBASIC0.85□□□□□ -2.27
LMX1AQ8TE12 MIR208B-201ENST00000401172 77 ntBASIC0.85□□□□□ -2.27
LMX1AQ8TE12 AL049545.1-201ENST00000401856 572 ntBASIC0.85□□□□□ -2.27
LMX1AQ8TE12 MRPL35P3-201ENST00000421557 364 ntBASIC0.85□□□□□ -2.27
LMX1AQ8TE12 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC0.85□□□□□ -2.27
LMX1AQ8TE12 snoU13.30-201ENST00000458951 104 ntBASIC0.85□□□□□ -2.27
LMX1AQ8TE12 SNORA14.1-201ENST00000516113 141 ntBASIC0.85□□□□□ -2.27
LMX1AQ8TE12 RNU4ATAC8P-201ENST00000516196 109 ntBASIC0.85□□□□□ -2.27
LMX1AQ8TE12 RNA5SP384-201ENST00000516615 116 ntBASIC0.85□□□□□ -2.27
LMX1AQ8TE12 RNU6-323P-201ENST00000521915 107 ntBASIC0.85□□□□□ -2.27
LMX1AQ8TE12 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC0.85□□□□□ -2.27
LMX1AQ8TE12 NTS-203ENST00000551529 801 ntTSL 3 BASIC0.85□□□□□ -2.27
LMX1AQ8TE12 MIR4742-201ENST00000581069 85 ntBASIC0.85□□□□□ -2.27
LMX1AQ8TE12 AC087683.1-201ENST00000591187 441 ntBASIC0.85□□□□□ -2.27
LMX1AQ8TE12 HSPE1P19-201ENST00000603327 295 ntBASIC0.85□□□□□ -2.27
LMX1AQ8TE12 MIR3976-201ENST00000606807 139 ntBASIC0.85□□□□□ -2.27
LMX1AQ8TE12 AC008147.4-201ENST00000617570 1204 ntBASIC0.85□□□□□ -2.27
LMX1AQ8TE12 MIR338-201ENST00000636369 67 ntBASIC0.85□□□□□ -2.27
LMX1AQ8TE12 BX322639.1-202ENST00000423987 2213 ntBASIC0.84□□□□□ -2.27
LMX1AQ8TE12 RNU6-545P-201ENST00000362681 104 ntBASIC0.84□□□□□ -2.27
LMX1AQ8TE12 Y_RNA.132-201ENST00000363421 102 ntBASIC0.84□□□□□ -2.27
LMX1AQ8TE12 RNU1-96P-201ENST00000364163 162 ntBASIC0.84□□□□□ -2.27
LMX1AQ8TE12 RNU6-996P-201ENST00000365438 107 ntBASIC0.84□□□□□ -2.27
LMX1AQ8TE12 RNU5A-6P-201ENST00000384136 116 ntBASIC0.84□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 277.3 ms