Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 UACA-202ENST00000379983 4859 ntAPPRIS ALT2 TSL 5 BASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
UBE3DQ7Z6J8 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 TNPO1P3-201ENST00000436471 2662 ntBASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 RNA5SP295-201ENST00000362655 121 ntBASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 RNU4-10P-201ENST00000364383 140 ntBASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 RNU6-818P-201ENST00000364837 108 ntBASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 AP000567.1-201ENST00000406413 156 ntBASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 RNU4-43P-201ENST00000410628 137 ntBASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 AL035423.1-201ENST00000420331 213 ntBASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 AC097463.2-201ENST00000421074 142 ntBASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 RPL23AP7-203ENST00000449021 469 ntBASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 AL121914.1-201ENST00000450188 156 ntBASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 CENPBD1P1-201ENST00000464061 469 ntBASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 HMGN2P9-201ENST00000476875 229 ntBASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 KRTAP13-6P-201ENST00000508999 371 ntBASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 SCARNA8-201ENST00000515924 131 ntBASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 AC006130.2-201ENST00000586202 326 ntBASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 AC008739.2-201ENST00000597006 317 ntBASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 AC091953.5-201ENST00000622919 233 ntBASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 AC009487.4-201ENST00000624969 3585 ntBASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.44□□□□□ -1.86
UBE3DQ7Z6J8 ERMN-205ENST00000410096 3793 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
UBE3DQ7Z6J8 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
UBE3DQ7Z6J8 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.43□□□□□ -1.86
UBE3DQ7Z6J8 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
UBE3DQ7Z6J8 RNU6-834P-201ENST00000362367 110 ntBASIC3.43□□□□□ -1.86
UBE3DQ7Z6J8 SNORD9-201ENST00000362566 104 ntBASIC3.43□□□□□ -1.86
UBE3DQ7Z6J8 Y_RNA.229-201ENST00000364347 113 ntBASIC3.43□□□□□ -1.86
UBE3DQ7Z6J8 SNORA51.4-201ENST00000364993 124 ntBASIC3.43□□□□□ -1.86
UBE3DQ7Z6J8 MIR15B-201ENST00000385045 98 ntBASIC3.43□□□□□ -1.86
UBE3DQ7Z6J8 RNU6-1077P-201ENST00000410506 102 ntBASIC3.43□□□□□ -1.86
UBE3DQ7Z6J8 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
UBE3DQ7Z6J8 EIF4EP4-201ENST00000424916 578 ntBASIC3.43□□□□□ -1.86
UBE3DQ7Z6J8 AC108488.2-201ENST00000438485 421 ntAPPRIS P1 TSL 3 BASIC3.43□□□□□ -1.86
UBE3DQ7Z6J8 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.43□□□□□ -1.86
UBE3DQ7Z6J8 RNU6-453P-201ENST00000516819 85 ntBASIC3.43□□□□□ -1.86
UBE3DQ7Z6J8 RNU6-1231P-201ENST00000517185 103 ntBASIC3.43□□□□□ -1.86
UBE3DQ7Z6J8 LARP7P3-201ENST00000579888 337 ntBASIC3.43□□□□□ -1.86
UBE3DQ7Z6J8 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.43□□□□□ -1.86
UBE3DQ7Z6J8 AL359881.1-201ENST00000602916 267 ntBASIC3.43□□□□□ -1.86
UBE3DQ7Z6J8 MIR548AY-201ENST00000617669 107 ntBASIC3.43□□□□□ -1.86
UBE3DQ7Z6J8 AC039056.2-201ENST00000622261 511 ntBASIC3.43□□□□□ -1.86
UBE3DQ7Z6J8 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.43□□□□□ -1.86
UBE3DQ7Z6J8 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.43□□□□□ -1.86
UBE3DQ7Z6J8 ANKRD20A9P-201ENST00000457997 2978 ntBASIC3.42□□□□□ -1.86
UBE3DQ7Z6J8 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
UBE3DQ7Z6J8 Y_RNA.353-201ENST00000365440 108 ntBASIC3.42□□□□□ -1.86
UBE3DQ7Z6J8 RN7SKP202-201ENST00000410439 330 ntBASIC3.42□□□□□ -1.86
UBE3DQ7Z6J8 ATP5A1P2-201ENST00000412323 255 ntBASIC3.42□□□□□ -1.86
UBE3DQ7Z6J8 AC006461.1-201ENST00000412637 326 ntBASIC3.42□□□□□ -1.86
UBE3DQ7Z6J8 DBIP2-201ENST00000419076 262 ntBASIC3.42□□□□□ -1.86
UBE3DQ7Z6J8 AC010154.1-201ENST00000425857 269 ntBASIC3.42□□□□□ -1.86
UBE3DQ7Z6J8 AC245047.8-201ENST00000456455 284 ntBASIC3.42□□□□□ -1.86
UBE3DQ7Z6J8 RNU7-170P-201ENST00000459303 61 ntBASIC3.42□□□□□ -1.86
UBE3DQ7Z6J8 RN7SL542P-201ENST00000467147 294 ntBASIC3.42□□□□□ -1.86
UBE3DQ7Z6J8 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.42□□□□□ -1.86
UBE3DQ7Z6J8 RNU1-95P-201ENST00000516357 160 ntBASIC3.42□□□□□ -1.86
UBE3DQ7Z6J8 RNU7-115P-201ENST00000516433 55 ntBASIC3.42□□□□□ -1.86
UBE3DQ7Z6J8 RNU5F-4P-201ENST00000516581 114 ntBASIC3.42□□□□□ -1.86
UBE3DQ7Z6J8 RNU1-128P-201ENST00000516704 160 ntBASIC3.42□□□□□ -1.86
UBE3DQ7Z6J8 RNU6-579P-201ENST00000516879 102 ntBASIC3.42□□□□□ -1.86
UBE3DQ7Z6J8 RNU7-116P-201ENST00000516940 62 ntBASIC3.42□□□□□ -1.86
UBE3DQ7Z6J8 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC3.42□□□□□ -1.86
UBE3DQ7Z6J8 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC3.42□□□□□ -1.86
UBE3DQ7Z6J8 MIR3658-201ENST00000636291 56 ntBASIC3.42□□□□□ -1.86
UBE3DQ7Z6J8 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.42□□□□□ -1.86
UBE3DQ7Z6J8 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
UBE3DQ7Z6J8 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.42□□□□□ -1.86
UBE3DQ7Z6J8 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
UBE3DQ7Z6J8 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
UBE3DQ7Z6J8 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
UBE3DQ7Z6J8 Y_RNA.420-201ENST00000384043 110 ntBASIC3.41□□□□□ -1.86
UBE3DQ7Z6J8 RNU6-80P-201ENST00000384195 107 ntBASIC3.41□□□□□ -1.86
UBE3DQ7Z6J8 MIR767-201ENST00000390228 109 ntBASIC3.41□□□□□ -1.86
UBE3DQ7Z6J8 SNORD37.2-201ENST00000391075 66 ntBASIC3.41□□□□□ -1.86
UBE3DQ7Z6J8 RNA5SP252-201ENST00000391131 119 ntBASIC3.41□□□□□ -1.86
UBE3DQ7Z6J8 AL606845.1-201ENST00000404881 255 ntBASIC3.41□□□□□ -1.86
UBE3DQ7Z6J8 MIR1283-1-201ENST00000408494 87 ntBASIC3.41□□□□□ -1.86
UBE3DQ7Z6J8 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.41□□□□□ -1.86
UBE3DQ7Z6J8 RNA5SP112-201ENST00000515937 99 ntBASIC3.41□□□□□ -1.86
UBE3DQ7Z6J8 RNU6-1333P-201ENST00000516162 93 ntBASIC3.41□□□□□ -1.86
UBE3DQ7Z6J8 SNORA70.18-201ENST00000516696 98 ntBASIC3.41□□□□□ -1.86
UBE3DQ7Z6J8 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.41□□□□□ -1.86
UBE3DQ7Z6J8 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.41□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 207 ms