Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 RNU6-106P-201ENST00000384405 107 ntBASIC4.39□□□□□ -1.71
SH3RF1Q7Z6J0 MIR147B-201ENST00000390185 80 ntBASIC4.39□□□□□ -1.71
SH3RF1Q7Z6J0 HMGN2P8-201ENST00000391458 268 ntBASIC4.39□□□□□ -1.71
SH3RF1Q7Z6J0 SNORA3.3-201ENST00000408712 125 ntBASIC4.39□□□□□ -1.71
SH3RF1Q7Z6J0 AL139247.1-201ENST00000422768 325 ntBASIC4.39□□□□□ -1.71
SH3RF1Q7Z6J0 RPL23AP82-202ENST00000427528 469 ntBASIC4.39□□□□□ -1.71
SH3RF1Q7Z6J0 RPS3P1-201ENST00000456781 192 ntBASIC4.39□□□□□ -1.71
SH3RF1Q7Z6J0 AC106707.2-201ENST00000484182 374 ntBASIC4.39□□□□□ -1.71
SH3RF1Q7Z6J0 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.39□□□□□ -1.71
SH3RF1Q7Z6J0 MIR486-1-201ENST00000612171 68 ntBASIC4.39□□□□□ -1.71
SH3RF1Q7Z6J0 AC069528.2-201ENST00000624849 1991 ntBASIC4.39□□□□□ -1.71
SH3RF1Q7Z6J0 AC068647.1-201ENST00000489539 2265 ntBASIC4.39□□□□□ -1.71
SH3RF1Q7Z6J0 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
SH3RF1Q7Z6J0 AC026241.1-201ENST00000517873 2142 ntBASIC4.39□□□□□ -1.71
SH3RF1Q7Z6J0 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC4.39□□□□□ -1.71
SH3RF1Q7Z6J0 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.38□□□□□ -1.71
SH3RF1Q7Z6J0 MAPK10-372ENST00000641954 3413 ntBASIC4.38□□□□□ -1.71
SH3RF1Q7Z6J0 SNORA67.2-201ENST00000384300 149 ntBASIC4.38□□□□□ -1.71
SH3RF1Q7Z6J0 MIR199A2-201ENST00000385289 110 ntBASIC4.38□□□□□ -1.71
SH3RF1Q7Z6J0 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.38□□□□□ -1.71
SH3RF1Q7Z6J0 MIR3609-201ENST00000582661 80 ntBASIC4.38□□□□□ -1.71
SH3RF1Q7Z6J0 AC244505.7-201ENST00000599675 272 ntBASIC4.38□□□□□ -1.71
SH3RF1Q7Z6J0 AL121890.5-201ENST00000620848 304 ntBASIC4.38□□□□□ -1.71
SH3RF1Q7Z6J0 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC4.38□□□□□ -1.71
SH3RF1Q7Z6J0 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.38□□□□□ -1.71
SH3RF1Q7Z6J0 FAM35DP-201ENST00000323387 2712 ntBASIC4.38□□□□□ -1.71
SH3RF1Q7Z6J0 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.38□□□□□ -1.71
SH3RF1Q7Z6J0 GABRG2-213ENST00000639046 3058 ntTSL 5 BASIC4.38□□□□□ -1.71
SH3RF1Q7Z6J0 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.38□□□□□ -1.71
SH3RF1Q7Z6J0 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.38□□□□□ -1.71
SH3RF1Q7Z6J0 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.38□□□□□ -1.71
SH3RF1Q7Z6J0 DOCK7-219ENST00000635253 6423 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 LINC02471-203ENST00000641941 4752 ntBASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 Y_RNA.114-201ENST00000363265 113 ntBASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 Y_RNA.120-201ENST00000363304 110 ntBASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 SNORD18B-201ENST00000365659 72 ntBASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 Y_RNA.587-201ENST00000391210 103 ntBASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 Y_RNA.617-201ENST00000410920 90 ntBASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 HMGN2P20-201ENST00000437531 273 ntBASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 BX510359.1-201ENST00000456973 237 ntBASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 RN7SL93P-201ENST00000463035 293 ntBASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 RPL23AP62-201ENST00000463396 453 ntBASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 RNU7-116P-201ENST00000516940 62 ntBASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 AC012493.2-201ENST00000595083 291 ntBASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 AP003357.1-201ENST00000604497 148 ntBASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 RPL17P51-201ENST00000605218 238 ntBASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 AL591424.2-201ENST00000617023 128 ntBASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 AC138915.1-201ENST00000565427 1685 ntBASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 ZNF345-214ENST00000612719 2938 ntAPPRIS P1 TSL 4 BASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.37□□□□□ -1.71
SH3RF1Q7Z6J0 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SH3RF1Q7Z6J0 U8.1-201ENST00000362843 134 ntBASIC4.36□□□□□ -1.71
SH3RF1Q7Z6J0 RNU6-655P-201ENST00000362858 107 ntBASIC4.36□□□□□ -1.71
SH3RF1Q7Z6J0 RNU6-1210P-201ENST00000363775 107 ntBASIC4.36□□□□□ -1.71
SH3RF1Q7Z6J0 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
SH3RF1Q7Z6J0 RNA5SP496-201ENST00000391240 109 ntBASIC4.36□□□□□ -1.71
SH3RF1Q7Z6J0 MIR873-201ENST00000401120 77 ntBASIC4.36□□□□□ -1.71
SH3RF1Q7Z6J0 SNRPGP8-201ENST00000454064 226 ntBASIC4.36□□□□□ -1.71
SH3RF1Q7Z6J0 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.36□□□□□ -1.71
SH3RF1Q7Z6J0 RNA5SP310-201ENST00000459084 116 ntBASIC4.36□□□□□ -1.71
SH3RF1Q7Z6J0 RNU6-197P-201ENST00000516680 100 ntBASIC4.36□□□□□ -1.71
SH3RF1Q7Z6J0 RN7SKP289-201ENST00000517244 295 ntBASIC4.36□□□□□ -1.71
SH3RF1Q7Z6J0 MIR3690-201ENST00000580266 75 ntBASIC4.36□□□□□ -1.71
SH3RF1Q7Z6J0 POLR3GP1-201ENST00000594073 261 ntBASIC4.36□□□□□ -1.71
SH3RF1Q7Z6J0 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC4.36□□□□□ -1.71
SH3RF1Q7Z6J0 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
SH3RF1Q7Z6J0 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.36□□□□□ -1.71
SH3RF1Q7Z6J0 UNC13C-201ENST00000260323 12946 ntAPPRIS P1 TSL 5 BASIC4.36□□□□□ -1.71
SH3RF1Q7Z6J0 AL159152.1-201ENST00000635019 2587 ntBASIC4.36□□□□□ -1.71
SH3RF1Q7Z6J0 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SH3RF1Q7Z6J0 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.36□□□□□ -1.71
SH3RF1Q7Z6J0 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC4.36□□□□□ -1.71
SH3RF1Q7Z6J0 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC4.36□□□□□ -1.71
SH3RF1Q7Z6J0 F8-202ENST00000360256 9059 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
SH3RF1Q7Z6J0 AL596211.1-201ENST00000569873 2277 ntBASIC4.35□□□□□ -1.71
SH3RF1Q7Z6J0 SUCNR1-201ENST00000362032 4181 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SH3RF1Q7Z6J0 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.35□□□□□ -1.71
SH3RF1Q7Z6J0 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SH3RF1Q7Z6J0 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
SH3RF1Q7Z6J0 Y_RNA.432-201ENST00000384087 111 ntBASIC4.35□□□□□ -1.71
SH3RF1Q7Z6J0 MIR586-201ENST00000385035 97 ntBASIC4.35□□□□□ -1.71
SH3RF1Q7Z6J0 Z82209.1-201ENST00000422141 2135 ntBASIC4.35□□□□□ -1.71
SH3RF1Q7Z6J0 RPL23AP7-203ENST00000449021 469 ntBASIC4.35□□□□□ -1.71
SH3RF1Q7Z6J0 snoU13.28-201ENST00000459235 104 ntBASIC4.35□□□□□ -1.71
SH3RF1Q7Z6J0 RNU6-437P-201ENST00000459408 95 ntBASIC4.35□□□□□ -1.71
SH3RF1Q7Z6J0 AL133162.1-201ENST00000463228 453 ntBASIC4.35□□□□□ -1.71
SH3RF1Q7Z6J0 CENPBD1P1-201ENST00000464061 469 ntBASIC4.35□□□□□ -1.71
SH3RF1Q7Z6J0 RPL23AP54-201ENST00000495129 419 ntBASIC4.35□□□□□ -1.71
SH3RF1Q7Z6J0 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC4.35□□□□□ -1.71
SH3RF1Q7Z6J0 RNU1-30P-201ENST00000606575 163 ntBASIC4.35□□□□□ -1.71
SH3RF1Q7Z6J0 MIR3651-201ENST00000630427 90 ntBASIC4.35□□□□□ -1.71
SH3RF1Q7Z6J0 AL672296.1-201ENST00000427780 2158 ntBASIC4.35□□□□□ -1.71
SH3RF1Q7Z6J0 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms