Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 AC007395.1-201ENST00000451333 677 ntBASIC3.36□□□□□ -1.87
NKX3-2P78367 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.36□□□□□ -1.87
NKX3-2P78367 AC006539.3-201ENST00000454258 129 ntBASIC3.36□□□□□ -1.87
NKX3-2P78367 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.36□□□□□ -1.87
NKX3-2P78367 AP002884.2-201ENST00000471647 395 ntBASIC3.36□□□□□ -1.87
NKX3-2P78367 RNY3P16-201ENST00000516338 101 ntBASIC3.36□□□□□ -1.87
NKX3-2P78367 SCARNA20.6-201ENST00000517251 106 ntBASIC3.36□□□□□ -1.87
NKX3-2P78367 RNU6-711P-201ENST00000517255 106 ntBASIC3.36□□□□□ -1.87
NKX3-2P78367 AC233702.2-202ENST00000562547 291 ntBASIC3.36□□□□□ -1.87
NKX3-2P78367 SNORD98-201ENST00000636377 67 ntBASIC3.36□□□□□ -1.87
NKX3-2P78367 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
NKX3-2P78367 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.35□□□□□ -1.87
NKX3-2P78367 AL109809.4-201ENST00000603520 2185 ntBASIC3.35□□□□□ -1.87
NKX3-2P78367 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
NKX3-2P78367 Y_RNA.101-201ENST00000363154 102 ntBASIC3.35□□□□□ -1.87
NKX3-2P78367 Y_RNA.179-201ENST00000363844 90 ntBASIC3.35□□□□□ -1.87
NKX3-2P78367 RNU6-923P-201ENST00000364753 107 ntBASIC3.35□□□□□ -1.87
NKX3-2P78367 SNORA1.3-201ENST00000384676 136 ntBASIC3.35□□□□□ -1.87
NKX3-2P78367 TRAJ59-201ENST00000390480 54 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
NKX3-2P78367 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC3.35□□□□□ -1.87
NKX3-2P78367 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.35□□□□□ -1.87
NKX3-2P78367 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC3.35□□□□□ -1.87
NKX3-2P78367 AC108938.1-201ENST00000451204 136 ntBASIC3.35□□□□□ -1.87
NKX3-2P78367 RNU6-625P-201ENST00000459412 107 ntBASIC3.35□□□□□ -1.87
NKX3-2P78367 AC007215.1-201ENST00000464893 276 ntBASIC3.35□□□□□ -1.87
NKX3-2P78367 AC091179.3-201ENST00000474761 144 ntBASIC3.35□□□□□ -1.87
NKX3-2P78367 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC3.35□□□□□ -1.87
NKX3-2P78367 AC107016.2-201ENST00000547968 190 ntBASIC3.35□□□□□ -1.87
NKX3-2P78367 AC018448.1-201ENST00000552843 316 ntBASIC3.35□□□□□ -1.87
NKX3-2P78367 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.35□□□□□ -1.87
NKX3-2P78367 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
NKX3-2P78367 AC002546.1-201ENST00000588041 2504 ntBASIC3.35□□□□□ -1.87
NKX3-2P78367 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC3.35□□□□□ -1.87
NKX3-2P78367 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.35□□□□□ -1.87
NKX3-2P78367 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
NKX3-2P78367 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
NKX3-2P78367 RNU6-918P-201ENST00000391219 106 ntBASIC3.34□□□□□ -1.87
NKX3-2P78367 RN7SKP284-201ENST00000411002 343 ntBASIC3.34□□□□□ -1.87
NKX3-2P78367 ELOCP21-201ENST00000412558 336 ntBASIC3.34□□□□□ -1.87
NKX3-2P78367 RPS15AP5-201ENST00000436276 388 ntBASIC3.34□□□□□ -1.87
NKX3-2P78367 AL714022.1-201ENST00000439897 151 ntBASIC3.34□□□□□ -1.87
NKX3-2P78367 UQCRBP2-201ENST00000447827 297 ntBASIC3.34□□□□□ -1.87
NKX3-2P78367 SNORD2.1-201ENST00000458762 69 ntBASIC3.34□□□□□ -1.87
NKX3-2P78367 RNU5F-2P-201ENST00000516066 82 ntBASIC3.34□□□□□ -1.87
NKX3-2P78367 Y_RNA.703-201ENST00000516846 111 ntBASIC3.34□□□□□ -1.87
NKX3-2P78367 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.34□□□□□ -1.87
NKX3-2P78367 MIR4319-201ENST00000577285 85 ntBASIC3.34□□□□□ -1.87
NKX3-2P78367 MIR3145-201ENST00000580727 82 ntBASIC3.34□□□□□ -1.87
NKX3-2P78367 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.34□□□□□ -1.87
NKX3-2P78367 AC091152.3-201ENST00000604227 325 ntBASIC3.34□□□□□ -1.87
NKX3-2P78367 AC005828.6-201ENST00000606610 232 ntBASIC3.34□□□□□ -1.87
NKX3-2P78367 AC004467.1-201ENST00000615678 330 ntBASIC3.34□□□□□ -1.87
NKX3-2P78367 AC021753.1-201ENST00000635724 168 ntBASIC3.34□□□□□ -1.87
NKX3-2P78367 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.87
NKX3-2P78367 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
NKX3-2P78367 AC007496.3-201ENST00000624987 3443 ntBASIC3.34□□□□□ -1.87
NKX3-2P78367 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.34□□□□□ -1.87
NKX3-2P78367 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.88
NKX3-2P78367 AC002543.1-201ENST00000299783 1954 ntBASIC3.34□□□□□ -1.88
NKX3-2P78367 MAPK10-362ENST00000641864 4484 ntBASIC3.34□□□□□ -1.88
NKX3-2P78367 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC3.34□□□□□ -1.88
NKX3-2P78367 BX322639.1-202ENST00000423987 2213 ntBASIC3.34□□□□□ -1.88
NKX3-2P78367 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.33□□□□□ -1.88
NKX3-2P78367 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
NKX3-2P78367 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
NKX3-2P78367 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.33□□□□□ -1.88
NKX3-2P78367 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.33□□□□□ -1.88
NKX3-2P78367 RNU6-529P-201ENST00000363383 104 ntBASIC3.33□□□□□ -1.88
NKX3-2P78367 RNU6-727P-201ENST00000363592 107 ntBASIC3.33□□□□□ -1.88
NKX3-2P78367 SNORA72.2-201ENST00000365028 127 ntBASIC3.33□□□□□ -1.88
NKX3-2P78367 LINC00862-202ENST00000367356 759 ntTSL 3 BASIC3.33□□□□□ -1.88
NKX3-2P78367 SNORA46.1-201ENST00000391069 153 ntBASIC3.33□□□□□ -1.88
NKX3-2P78367 AL512633.1-201ENST00000399931 655 ntBASIC3.33□□□□□ -1.88
NKX3-2P78367 MTCO2P33-201ENST00000402100 465 ntBASIC3.33□□□□□ -1.88
NKX3-2P78367 RNU2-49P-201ENST00000410666 184 ntBASIC3.33□□□□□ -1.88
NKX3-2P78367 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.33□□□□□ -1.88
NKX3-2P78367 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC3.33□□□□□ -1.88
NKX3-2P78367 AL109933.2-201ENST00000452651 260 ntBASIC3.33□□□□□ -1.88
NKX3-2P78367 AC005042.3-201ENST00000453230 174 ntBASIC3.33□□□□□ -1.88
NKX3-2P78367 AC010099.1-201ENST00000455434 375 ntBASIC3.33□□□□□ -1.88
NKX3-2P78367 AC091179.1-201ENST00000461606 579 ntBASIC3.33□□□□□ -1.88
NKX3-2P78367 AIG1P1-201ENST00000503376 148 ntBASIC3.33□□□□□ -1.88
NKX3-2P78367 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC3.33□□□□□ -1.88
NKX3-2P78367 AP002001.1-203ENST00000534002 267 ntBASIC3.33□□□□□ -1.88
NKX3-2P78367 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.33□□□□□ -1.88
NKX3-2P78367 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.33□□□□□ -1.88
NKX3-2P78367 CYP4A27P-201ENST00000567218 190 ntBASIC3.33□□□□□ -1.88
NKX3-2P78367 AC072026.1-201ENST00000605023 201 ntBASIC3.33□□□□□ -1.88
NKX3-2P78367 MIR6076-201ENST00000617521 113 ntBASIC3.33□□□□□ -1.88
NKX3-2P78367 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.33□□□□□ -1.88
NKX3-2P78367 AC103988.1-201ENST00000566382 2177 ntBASIC3.33□□□□□ -1.88
NKX3-2P78367 AL021368.2-201ENST00000606125 5352 ntBASIC3.33□□□□□ -1.88
NKX3-2P78367 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.33□□□□□ -1.88
NKX3-2P78367 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
NKX3-2P78367 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.33□□□□□ -1.88
NKX3-2P78367 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
NKX3-2P78367 Y_RNA.40-201ENST00000362645 93 ntBASIC3.32□□□□□ -1.88
NKX3-2P78367 RNU6-793P-201ENST00000384233 104 ntBASIC3.32□□□□□ -1.88
NKX3-2P78367 Y_RNA.498-201ENST00000384460 102 ntBASIC3.32□□□□□ -1.88
NKX3-2P78367 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 144.3 ms