Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
FOXA1P55317 RNU6-545P-201ENST00000362681 104 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 RNU6-227P-201ENST00000362865 103 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 Y_RNA.132-201ENST00000363421 102 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 RNY1P14-201ENST00000384426 108 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 MIR520A-201ENST00000384862 85 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 RPL21P1-201ENST00000399532 476 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 SNRPEP10-201ENST00000420249 274 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 MTND3P9-201ENST00000429526 346 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 AC245047.4-201ENST00000433189 144 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 HSPE1P9-201ENST00000440046 311 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 snoU13.30-201ENST00000458951 104 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 snoU13.18-201ENST00000459483 104 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 AC091435.1-201ENST00000505442 584 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 AC025465.4-201ENST00000513422 638 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 SNORA40.12-201ENST00000516329 111 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 AC104576.1-201ENST00000524225 88 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 AP003034.1-201ENST00000534621 422 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 NTS-203ENST00000551529 801 ntTSL 3 BASIC0.95□□□□□ -2.26
FOXA1P55317 AL118558.2-201ENST00000556294 238 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC0.95□□□□□ -2.26
FOXA1P55317 AP005136.1-201ENST00000579765 429 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 AC069114.2-201ENST00000604699 304 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 DLEU2_1.1-201ENST00000612089 120 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 DLEU2_1.2-201ENST00000614667 120 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 AC103705.1-201ENST00000619013 241 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 MIR8063-201ENST00000621930 81 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 AL133216.2-202ENST00000634512 349 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 OR4G1P-203ENST00000641984 1631 ntBASIC0.95□□□□□ -2.26
FOXA1P55317 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC0.95□□□□□ -2.26
FOXA1P55317 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.94□□□□□ -2.26
FOXA1P55317 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
FOXA1P55317 ELL2P3-201ENST00000457883 1602 ntBASIC0.94□□□□□ -2.26
FOXA1P55317 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.94□□□□□ -2.26
FOXA1P55317 RNU6-562P-201ENST00000362731 107 ntBASIC0.94□□□□□ -2.26
FOXA1P55317 Y_RNA.359-201ENST00000365498 102 ntBASIC0.94□□□□□ -2.26
FOXA1P55317 RNU6-877P-201ENST00000383868 107 ntBASIC0.94□□□□□ -2.26
FOXA1P55317 RNU6-418P-201ENST00000384035 107 ntBASIC0.94□□□□□ -2.26
FOXA1P55317 SNORA29-201ENST00000384183 140 ntBASIC0.94□□□□□ -2.26
FOXA1P55317 Y_RNA.553-201ENST00000384670 102 ntBASIC0.94□□□□□ -2.26
FOXA1P55317 MIR618-201ENST00000385287 98 ntBASIC0.94□□□□□ -2.26
FOXA1P55317 SNORD37.1-201ENST00000390968 65 ntBASIC0.94□□□□□ -2.26
FOXA1P55317 AL663109.1-201ENST00000411498 844 ntBASIC0.94□□□□□ -2.26
FOXA1P55317 MTCO1P21-201ENST00000416634 589 ntBASIC0.94□□□□□ -2.26
FOXA1P55317 AC090960.1-201ENST00000421072 306 ntBASIC0.94□□□□□ -2.26
FOXA1P55317 C8orf59P1-201ENST00000429930 303 ntBASIC0.94□□□□□ -2.26
FOXA1P55317 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC0.94□□□□□ -2.26
FOXA1P55317 RPL26P26-201ENST00000480251 434 ntBASIC0.94□□□□□ -2.26
FOXA1P55317 AC010424.1-201ENST00000506336 297 ntBASIC0.94□□□□□ -2.26
FOXA1P55317 AC091133.4-201ENST00000511142 308 ntBASIC0.94□□□□□ -2.26
FOXA1P55317 LINC02500-201ENST00000512547 493 ntTSL 3 BASIC0.94□□□□□ -2.26
FOXA1P55317 RNU6-1041P-201ENST00000516254 102 ntBASIC0.94□□□□□ -2.26
FOXA1P55317 RNU6-1069P-201ENST00000516612 133 ntBASIC0.94□□□□□ -2.26
FOXA1P55317 SNORD60.2-201ENST00000516883 86 ntBASIC0.94□□□□□ -2.26
FOXA1P55317 RNA5SP437-201ENST00000517249 129 ntBASIC0.94□□□□□ -2.26
FOXA1P55317 CENPUP1-201ENST00000526649 1202 ntBASIC0.94□□□□□ -2.26
FOXA1P55317 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC0.94□□□□□ -2.26
FOXA1P55317 AC016256.1-201ENST00000547971 354 ntBASIC0.94□□□□□ -2.26
FOXA1P55317 AC025423.5-201ENST00000550230 219 ntBASIC0.94□□□□□ -2.26
FOXA1P55317 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC0.94□□□□□ -2.26
FOXA1P55317 AC092747.3-201ENST00000603769 301 ntBASIC0.94□□□□□ -2.26
FOXA1P55317 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC0.94□□□□□ -2.26
FOXA1P55317 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
FOXA1P55317 AC010615.1-201ENST00000594254 1764 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 RNU6-271P-201ENST00000363858 105 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 RNU6-82P-201ENST00000363970 107 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 RNU1-96P-201ENST00000364163 162 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 RNU6-1317P-201ENST00000364582 104 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 Y_RNA.378-201ENST00000365652 113 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 MIR548B-201ENST00000385247 97 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 RNU1-78P-201ENST00000391248 165 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 RNU4-55P-201ENST00000410731 137 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 ARL5AP1-201ENST00000418991 388 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC0.93□□□□□ -2.26
FOXA1P55317 FTH1P12-201ENST00000432137 551 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 JTBP1-201ENST00000441314 247 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.93□□□□□ -2.26
FOXA1P55317 COX6CP14-201ENST00000469580 174 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 HMGN2P9-201ENST00000476875 229 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 AC087343.1-201ENST00000477341 475 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 AC099513.1-201ENST00000490423 301 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 RNU6-856P-201ENST00000516959 98 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 AC087854.1-201ENST00000519706 414 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC0.93□□□□□ -2.26
FOXA1P55317 AC006362.1-201ENST00000567392 174 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 AC016727.2-201ENST00000603988 621 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 AL357078.3-201ENST00000607528 618 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 AL121757.2-201ENST00000611223 313 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 AC009509.4-201ENST00000619202 509 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.93□□□□□ -2.26
FOXA1P55317 AC095038.3-201ENST00000634439 195 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 MIR3974-201ENST00000637126 96 ntBASIC0.93□□□□□ -2.26
FOXA1P55317 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
FOXA1P55317 AC100821.1-201ENST00000523153 2479 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 RNU5B-2P-201ENST00000363036 113 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 SNORD114-27-201ENST00000363766 70 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 RNU6-1019P-201ENST00000364424 107 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 RNU1-93P-201ENST00000364704 169 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 RNU4-66P-201ENST00000365199 138 ntBASIC0.92□□□□□ -2.26
FOXA1P55317 RNU6-1329P-201ENST00000365664 107 ntBASIC0.92□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms