Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.39□□□□□ -2.03
SHMT1P34896 RNA5SP125-201ENST00000364843 120 ntBASIC2.39□□□□□ -2.03
SHMT1P34896 RNU6-378P-201ENST00000384324 107 ntBASIC2.39□□□□□ -2.03
SHMT1P34896 MIR153-2-201ENST00000385225 87 ntBASIC2.39□□□□□ -2.03
SHMT1P34896 SNORA46.1-201ENST00000391069 153 ntBASIC2.39□□□□□ -2.03
SHMT1P34896 RNU6-1093P-201ENST00000391194 107 ntBASIC2.39□□□□□ -2.03
SHMT1P34896 Y_RNA.597-201ENST00000410463 100 ntBASIC2.39□□□□□ -2.03
SHMT1P34896 MTCYBP10-201ENST00000424905 650 ntBASIC2.39□□□□□ -2.03
SHMT1P34896 CBX3P6-201ENST00000430257 527 ntBASIC2.39□□□□□ -2.03
SHMT1P34896 AL353997.1-201ENST00000432936 108 ntBASIC2.39□□□□□ -2.03
SHMT1P34896 RNU6-1198P-201ENST00000516904 67 ntBASIC2.39□□□□□ -2.03
SHMT1P34896 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.39□□□□□ -2.03
SHMT1P34896 EIF4A1P12-201ENST00000551910 141 ntBASIC2.39□□□□□ -2.03
SHMT1P34896 DEFB122-202ENST00000569013 197 ntBASIC2.39□□□□□ -2.03
SHMT1P34896 AC010928.2-201ENST00000588017 287 ntBASIC2.39□□□□□ -2.03
SHMT1P34896 AC025754.2-201ENST00000606491 432 ntBASIC2.39□□□□□ -2.03
SHMT1P34896 AL050343.2-201ENST00000607338 280 ntBASIC2.39□□□□□ -2.03
SHMT1P34896 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.39□□□□□ -2.03
SHMT1P34896 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.38□□□□□ -2.03
SHMT1P34896 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
SHMT1P34896 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
SHMT1P34896 SNORA38-201ENST00000363946 132 ntBASIC2.38□□□□□ -2.03
SHMT1P34896 Y_RNA.405-201ENST00000383979 100 ntBASIC2.38□□□□□ -2.03
SHMT1P34896 Y_RNA.451-201ENST00000384200 100 ntBASIC2.38□□□□□ -2.03
SHMT1P34896 Y_RNA.524-201ENST00000384564 100 ntBASIC2.38□□□□□ -2.03
SHMT1P34896 Y_RNA.561-201ENST00000384694 100 ntBASIC2.38□□□□□ -2.03
SHMT1P34896 MIR32-201ENST00000384965 70 ntBASIC2.38□□□□□ -2.03
SHMT1P34896 MIR561-201ENST00000385216 97 ntBASIC2.38□□□□□ -2.03
SHMT1P34896 SNORA12.2-201ENST00000391040 156 ntBASIC2.38□□□□□ -2.03
SHMT1P34896 RPS20P15-201ENST00000412792 311 ntBASIC2.38□□□□□ -2.03
SHMT1P34896 Z82188.1-201ENST00000436709 154 ntBASIC2.38□□□□□ -2.03
SHMT1P34896 HMGN1P13-201ENST00000505795 138 ntBASIC2.38□□□□□ -2.03
SHMT1P34896 AC022493.2-201ENST00000506122 481 ntBASIC2.38□□□□□ -2.03
SHMT1P34896 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC2.38□□□□□ -2.03
SHMT1P34896 RNU6-1170P-201ENST00000515974 106 ntBASIC2.38□□□□□ -2.03
SHMT1P34896 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.38□□□□□ -2.03
SHMT1P34896 AC018630.3-201ENST00000542637 96 ntBASIC2.38□□□□□ -2.03
SHMT1P34896 SUB1P3-201ENST00000564581 315 ntBASIC2.38□□□□□ -2.03
SHMT1P34896 MIR5694-201ENST00000581190 76 ntBASIC2.38□□□□□ -2.03
SHMT1P34896 AC073544.1-201ENST00000600110 1595 ntBASIC2.38□□□□□ -2.03
SHMT1P34896 AC100812.1-201ENST00000607622 580 ntBASIC2.38□□□□□ -2.03
SHMT1P34896 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
SHMT1P34896 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.37□□□□□ -2.03
SHMT1P34896 RNU6-490P-201ENST00000362985 107 ntBASIC2.37□□□□□ -2.03
SHMT1P34896 RNU6-1040P-201ENST00000383974 107 ntBASIC2.37□□□□□ -2.03
SHMT1P34896 AC007098.1-201ENST00000420122 367 ntBASIC2.37□□□□□ -2.03
SHMT1P34896 AC027124.2-201ENST00000428249 105 ntBASIC2.37□□□□□ -2.03
SHMT1P34896 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.37□□□□□ -2.03
SHMT1P34896 Y_RNA.706-201ENST00000516933 99 ntBASIC2.37□□□□□ -2.03
SHMT1P34896 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.37□□□□□ -2.03
SHMT1P34896 MIR5089-201ENST00000580047 84 ntBASIC2.37□□□□□ -2.03
SHMT1P34896 AC080078.3-201ENST00000605407 463 ntBASIC2.37□□□□□ -2.03
SHMT1P34896 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC2.37□□□□□ -2.03
SHMT1P34896 U4atac.1-201ENST00000618345 95 ntBASIC2.37□□□□□ -2.03
SHMT1P34896 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.37□□□□□ -2.03
SHMT1P34896 AC006026.1-201ENST00000444025 1803 ntBASIC2.37□□□□□ -2.03
SHMT1P34896 RNU6-137P-201ENST00000363680 108 ntBASIC2.36□□□□□ -2.03
SHMT1P34896 SNORD32B-201ENST00000364460 84 ntBASIC2.36□□□□□ -2.03
SHMT1P34896 RNU6-17P-201ENST00000384245 107 ntBASIC2.36□□□□□ -2.03
SHMT1P34896 U8.10-201ENST00000384260 133 ntBASIC2.36□□□□□ -2.03
SHMT1P34896 RNU6-18P-201ENST00000384527 107 ntBASIC2.36□□□□□ -2.03
SHMT1P34896 RNU6-1072P-201ENST00000384703 107 ntBASIC2.36□□□□□ -2.03
SHMT1P34896 RNU6-443P-201ENST00000384780 107 ntBASIC2.36□□□□□ -2.03
SHMT1P34896 Y_RNA.577-201ENST00000384794 101 ntBASIC2.36□□□□□ -2.03
SHMT1P34896 Y_RNA.579-201ENST00000390939 94 ntBASIC2.36□□□□□ -2.03
SHMT1P34896 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.36□□□□□ -2.03
SHMT1P34896 MIR1294-201ENST00000408503 142 ntBASIC2.36□□□□□ -2.03
SHMT1P34896 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.36□□□□□ -2.03
SHMT1P34896 HMGN2P23-201ENST00000456759 269 ntBASIC2.36□□□□□ -2.03
SHMT1P34896 RNU7-26P-201ENST00000458980 63 ntBASIC2.36□□□□□ -2.03
SHMT1P34896 AC007215.1-201ENST00000464893 276 ntBASIC2.36□□□□□ -2.03
SHMT1P34896 AC027575.1-201ENST00000481064 460 ntBASIC2.36□□□□□ -2.03
SHMT1P34896 AC132942.1-201ENST00000486753 483 ntBASIC2.36□□□□□ -2.03
SHMT1P34896 RNA5SP54-201ENST00000516951 92 ntBASIC2.36□□□□□ -2.03
SHMT1P34896 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC2.36□□□□□ -2.03
SHMT1P34896 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC2.36□□□□□ -2.03
SHMT1P34896 SNRPGP19-201ENST00000603826 189 ntBASIC2.36□□□□□ -2.03
SHMT1P34896 RPL17P51-201ENST00000605218 238 ntBASIC2.36□□□□□ -2.03
SHMT1P34896 MIR6845-201ENST00000613182 61 ntBASIC2.36□□□□□ -2.03
SHMT1P34896 AL160413.1-201ENST00000622780 310 ntBASIC2.36□□□□□ -2.03
SHMT1P34896 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
SHMT1P34896 ZNF720P1-201ENST00000562403 1939 ntBASIC2.36□□□□□ -2.03
SHMT1P34896 SNORD115-8-201ENST00000363856 82 ntBASIC2.35□□□□□ -2.03
SHMT1P34896 RNU6-944P-201ENST00000364023 107 ntBASIC2.35□□□□□ -2.03
SHMT1P34896 SNORD115-38-201ENST00000365037 82 ntBASIC2.35□□□□□ -2.03
SHMT1P34896 RNU6-546P-201ENST00000383991 107 ntBASIC2.35□□□□□ -2.03
SHMT1P34896 Y_RNA.419-201ENST00000384041 102 ntBASIC2.35□□□□□ -2.03
SHMT1P34896 RNU6-541P-201ENST00000384709 110 ntBASIC2.35□□□□□ -2.03
SHMT1P34896 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.35□□□□□ -2.03
SHMT1P34896 MTCO3P29-201ENST00000432119 779 ntBASIC2.35□□□□□ -2.03
SHMT1P34896 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.35□□□□□ -2.03
SHMT1P34896 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC2.35□□□□□ -2.03
SHMT1P34896 AL139109.1-201ENST00000455491 297 ntBASIC2.35□□□□□ -2.03
SHMT1P34896 AC090096.1-201ENST00000489168 390 ntBASIC2.35□□□□□ -2.03
SHMT1P34896 AC108210.2-201ENST00000503681 201 ntBASIC2.35□□□□□ -2.03
SHMT1P34896 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.35□□□□□ -2.03
SHMT1P34896 RNU6-295P-201ENST00000516901 104 ntBASIC2.35□□□□□ -2.03
SHMT1P34896 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.35□□□□□ -2.03
SHMT1P34896 CBX3P7-201ENST00000532876 502 ntBASIC2.35□□□□□ -2.03
SHMT1P34896 AC004584.2-201ENST00000570407 410 ntBASIC2.35□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms