Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.36□□□□□ -2.03
HOXD3P31249 RNU1-68P-201ENST00000615382 146 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 AP001282.2-201ENST00000616149 309 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 U1.39-201ENST00000621562 146 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 MTND5P35-201ENST00000557537 1720 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.36□□□□□ -2.03
HOXD3P31249 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC2.36□□□□□ -2.03
HOXD3P31249 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.36□□□□□ -2.03
HOXD3P31249 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
HOXD3P31249 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC2.35□□□□□ -2.03
HOXD3P31249 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.35□□□□□ -2.03
HOXD3P31249 MIR22-201ENST00000362190 85 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 Y_RNA.14-201ENST00000362415 103 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 RNU1-72P-201ENST00000362976 153 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 SNORD56.3-201ENST00000363507 71 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 Y_RNA.179-201ENST00000363844 90 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 U8.9-201ENST00000365667 134 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 SNORA18.2-201ENST00000383865 132 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 RNU6-1083P-201ENST00000384022 107 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 RNU6-20P-201ENST00000384106 107 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 Y_RNA.541-201ENST00000384640 113 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 MT-TG-201ENST00000387429 68 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 Y_RNA.595-201ENST00000410403 105 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 AC005002.2-201ENST00000438228 269 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 AC090515.1-201ENST00000465295 476 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 AC107222.1-201ENST00000510899 637 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 MIR449C-201ENST00000516047 92 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 RNU6-388P-201ENST00000517012 105 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 RNU6-389P-201ENST00000517048 105 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 RNA5SP380-201ENST00000517190 98 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 DEFB108E-201ENST00000524692 240 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 AC012433.1-201ENST00000588916 398 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 RPL12P50-201ENST00000603116 116 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 AC010900.2-201ENST00000604508 210 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 AC090517.3-201ENST00000625170 141 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 AC069528.2-201ENST00000624849 1991 ntBASIC2.35□□□□□ -2.03
HOXD3P31249 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC2.34□□□□□ -2.03
HOXD3P31249 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
HOXD3P31249 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
HOXD3P31249 U3.9-201ENST00000363823 204 ntBASIC2.34□□□□□ -2.03
HOXD3P31249 Y_RNA.237-201ENST00000364439 102 ntBASIC2.34□□□□□ -2.03
HOXD3P31249 RNU6-1318P-201ENST00000365389 103 ntBASIC2.34□□□□□ -2.03
HOXD3P31249 SNORA54-201ENST00000384281 123 ntBASIC2.34□□□□□ -2.03
HOXD3P31249 AL512633.1-201ENST00000399931 655 ntBASIC2.34□□□□□ -2.03
HOXD3P31249 MIR887-201ENST00000401258 79 ntBASIC2.34□□□□□ -2.03
HOXD3P31249 AL033519.2-201ENST00000403958 392 ntBASIC2.34□□□□□ -2.03
HOXD3P31249 RNA5SP492-201ENST00000411330 114 ntBASIC2.34□□□□□ -2.03
HOXD3P31249 ELOCP21-201ENST00000412558 336 ntBASIC2.34□□□□□ -2.03
HOXD3P31249 RPL30P4-201ENST00000429309 333 ntBASIC2.34□□□□□ -2.03
HOXD3P31249 AC108059.2-201ENST00000434626 151 ntBASIC2.34□□□□□ -2.03
HOXD3P31249 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.34□□□□□ -2.03
HOXD3P31249 AC004386.2-201ENST00000441858 148 ntBASIC2.34□□□□□ -2.03
HOXD3P31249 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.34□□□□□ -2.03
HOXD3P31249 Y_RNA.673-201ENST00000516306 88 ntBASIC2.34□□□□□ -2.03
HOXD3P31249 RNU6-966P-201ENST00000516479 104 ntBASIC2.34□□□□□ -2.03
HOXD3P31249 Y_RNA.683-201ENST00000516508 93 ntBASIC2.34□□□□□ -2.03
HOXD3P31249 RNU2-44P-201ENST00000516795 194 ntBASIC2.34□□□□□ -2.03
HOXD3P31249 SCARNA11.3-201ENST00000517276 130 ntBASIC2.34□□□□□ -2.03
HOXD3P31249 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC2.34□□□□□ -2.03
HOXD3P31249 GTF3AP2-201ENST00000557014 266 ntBASIC2.34□□□□□ -2.03
HOXD3P31249 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.34□□□□□ -2.03
HOXD3P31249 MIR4506-201ENST00000584693 77 ntBASIC2.34□□□□□ -2.03
HOXD3P31249 AC023043.3-201ENST00000593113 385 ntBASIC2.34□□□□□ -2.03
HOXD3P31249 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.34□□□□□ -2.03
HOXD3P31249 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
HOXD3P31249 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
HOXD3P31249 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
HOXD3P31249 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
HOXD3P31249 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
HOXD3P31249 MIR449A-201ENST00000362113 91 ntBASIC2.33□□□□□ -2.04
HOXD3P31249 SNORD87-201ENST00000364849 89 ntBASIC2.33□□□□□ -2.04
HOXD3P31249 Y_RNA.350-201ENST00000365409 98 ntBASIC2.33□□□□□ -2.04
HOXD3P31249 RNU6-805P-201ENST00000365643 106 ntBASIC2.33□□□□□ -2.04
HOXD3P31249 RNU6-793P-201ENST00000384233 104 ntBASIC2.33□□□□□ -2.04
HOXD3P31249 Y_RNA.476-201ENST00000384347 108 ntBASIC2.33□□□□□ -2.04
HOXD3P31249 Y_RNA.597-201ENST00000410463 100 ntBASIC2.33□□□□□ -2.04
HOXD3P31249 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.33□□□□□ -2.04
HOXD3P31249 RPS12P18-201ENST00000442381 270 ntBASIC2.33□□□□□ -2.04
HOXD3P31249 HSPE1P25-201ENST00000455484 251 ntBASIC2.33□□□□□ -2.04
HOXD3P31249 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.33□□□□□ -2.04
HOXD3P31249 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.33□□□□□ -2.04
HOXD3P31249 AC091826.1-201ENST00000514065 313 ntBASIC2.33□□□□□ -2.04
HOXD3P31249 RNA5SP112-201ENST00000515937 99 ntBASIC2.33□□□□□ -2.04
HOXD3P31249 SCARNA24.2-201ENST00000516968 130 ntBASIC2.33□□□□□ -2.04
HOXD3P31249 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.33□□□□□ -2.04
HOXD3P31249 MIR3199-1-201ENST00000582434 88 ntBASIC2.33□□□□□ -2.04
HOXD3P31249 MIR5006-201ENST00000583027 110 ntBASIC2.33□□□□□ -2.04
HOXD3P31249 MIR4672-201ENST00000583126 81 ntBASIC2.33□□□□□ -2.04
HOXD3P31249 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.33□□□□□ -2.04
HOXD3P31249 SNRPGP20-201ENST00000604477 205 ntBASIC2.33□□□□□ -2.04
HOXD3P31249 SDR42E1P4-201ENST00000620894 481 ntBASIC2.33□□□□□ -2.04
HOXD3P31249 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.33□□□□□ -2.04
HOXD3P31249 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.33□□□□□ -2.04
HOXD3P31249 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC2.33□□□□□ -2.04
HOXD3P31249 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
HOXD3P31249 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
HOXD3P31249 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
HOXD3P31249 Y_RNA.60-201ENST00000362831 98 ntBASIC2.32□□□□□ -2.04
HOXD3P31249 RNU6-944P-201ENST00000364023 107 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 116.3 ms