Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 AC011373.1-201ENST00000607270 237 ntBASIC2.69□□□□□ -1.98
HOXD9P28356 MIR7515-201ENST00000637837 67 ntBASIC2.69□□□□□ -1.98
HOXD9P28356 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.69□□□□□ -1.98
HOXD9P28356 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.69□□□□□ -1.98
HOXD9P28356 AC026241.1-201ENST00000517873 2142 ntBASIC2.69□□□□□ -1.98
HOXD9P28356 AC004944.1-201ENST00000517807 3059 ntBASIC2.69□□□□□ -1.98
HOXD9P28356 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.69□□□□□ -1.98
HOXD9P28356 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
HOXD9P28356 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.68□□□□□ -1.98
HOXD9P28356 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.68□□□□□ -1.98
HOXD9P28356 RNU4-82P-201ENST00000362443 140 ntBASIC2.68□□□□□ -1.98
HOXD9P28356 Y_RNA.20-201ENST00000362479 113 ntBASIC2.68□□□□□ -1.98
HOXD9P28356 RNU6-1159P-201ENST00000362933 107 ntBASIC2.68□□□□□ -1.98
HOXD9P28356 Y_RNA.143-201ENST00000363520 106 ntBASIC2.68□□□□□ -1.98
HOXD9P28356 RNU6-1180P-201ENST00000364935 107 ntBASIC2.68□□□□□ -1.98
HOXD9P28356 Y_RNA.319-201ENST00000365138 92 ntBASIC2.68□□□□□ -1.98
HOXD9P28356 MIR10B-201ENST00000385011 110 ntBASIC2.68□□□□□ -1.98
HOXD9P28356 Y_RNA.581-201ENST00000391017 97 ntBASIC2.68□□□□□ -1.98
HOXD9P28356 RNU6-159P-201ENST00000391080 106 ntBASIC2.68□□□□□ -1.98
HOXD9P28356 SNORD88.1-201ENST00000408684 91 ntBASIC2.68□□□□□ -1.98
HOXD9P28356 CYCSP48-201ENST00000417124 323 ntBASIC2.68□□□□□ -1.98
HOXD9P28356 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.68□□□□□ -1.98
HOXD9P28356 AC104332.2-201ENST00000429959 156 ntBASIC2.68□□□□□ -1.98
HOXD9P28356 UBBP3-201ENST00000445497 241 ntBASIC2.68□□□□□ -1.98
HOXD9P28356 AC012308.1-201ENST00000451232 178 ntBASIC2.68□□□□□ -1.98
HOXD9P28356 RN7SL297P-201ENST00000483161 293 ntBASIC2.68□□□□□ -1.98
HOXD9P28356 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.68□□□□□ -1.98
HOXD9P28356 RN7SKP49-201ENST00000516675 260 ntBASIC2.68□□□□□ -1.98
HOXD9P28356 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.68□□□□□ -1.98
HOXD9P28356 AC103810.1-201ENST00000579873 453 ntBASIC2.68□□□□□ -1.98
HOXD9P28356 AL138963.2-201ENST00000605137 226 ntBASIC2.68□□□□□ -1.98
HOXD9P28356 RNU6-91P-201ENST00000607774 107 ntBASIC2.68□□□□□ -1.98
HOXD9P28356 AC002543.1-201ENST00000299783 1954 ntBASIC2.67□□□□□ -1.98
HOXD9P28356 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.67□□□□□ -1.98
HOXD9P28356 RNU6-879P-201ENST00000364328 108 ntBASIC2.67□□□□□ -1.98
HOXD9P28356 SNORA68.1-201ENST00000364537 132 ntBASIC2.67□□□□□ -1.98
HOXD9P28356 Y_RNA.416-201ENST00000384014 113 ntBASIC2.67□□□□□ -1.98
HOXD9P28356 RNU6-748P-201ENST00000384648 107 ntBASIC2.67□□□□□ -1.98
HOXD9P28356 RNU6-541P-201ENST00000384709 110 ntBASIC2.67□□□□□ -1.98
HOXD9P28356 SNORD58.1-201ENST00000391313 66 ntBASIC2.67□□□□□ -1.98
HOXD9P28356 MIR548H3-201ENST00000408771 118 ntBASIC2.67□□□□□ -1.98
HOXD9P28356 PTGES3P4-201ENST00000426243 356 ntBASIC2.67□□□□□ -1.98
HOXD9P28356 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXD9P28356 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.67□□□□□ -1.98
HOXD9P28356 RPL23AP70-201ENST00000483361 460 ntBASIC2.67□□□□□ -1.98
HOXD9P28356 AKIRIN2P1-201ENST00000505898 352 ntBASIC2.67□□□□□ -1.98
HOXD9P28356 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXD9P28356 SCARNA17.1-201ENST00000516211 143 ntBASIC2.67□□□□□ -1.98
HOXD9P28356 RNA5SP76-201ENST00000516277 87 ntBASIC2.67□□□□□ -1.98
HOXD9P28356 SCARNA17.2-201ENST00000516334 143 ntBASIC2.67□□□□□ -1.98
HOXD9P28356 RNA5SP148-201ENST00000516527 94 ntBASIC2.67□□□□□ -1.98
HOXD9P28356 AC115990.1-201ENST00000526957 301 ntBASIC2.67□□□□□ -1.98
HOXD9P28356 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.67□□□□□ -1.98
HOXD9P28356 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.67□□□□□ -1.98
HOXD9P28356 AC023824.2-201ENST00000566185 400 ntBASIC2.67□□□□□ -1.98
HOXD9P28356 AC073410.2-201ENST00000603240 332 ntBASIC2.67□□□□□ -1.98
HOXD9P28356 AL359198.2-201ENST00000611836 194 ntBASIC2.67□□□□□ -1.98
HOXD9P28356 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC2.67□□□□□ -1.98
HOXD9P28356 SCARNA17.4-201ENST00000614296 143 ntBASIC2.67□□□□□ -1.98
HOXD9P28356 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.67□□□□□ -1.98
HOXD9P28356 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.66□□□□□ -1.98
HOXD9P28356 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.66□□□□□ -1.98
HOXD9P28356 AL391987.6-201ENST00000305671 199 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 Y_RNA.237-201ENST00000364439 102 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 SNORA36A-201ENST00000384221 132 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 RNU6-1145P-201ENST00000384246 107 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 Y_RNA.462-201ENST00000384268 102 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 Y_RNA.477-201ENST00000384352 108 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 MIR627-201ENST00000384979 97 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 MIR329-1-201ENST00000385028 80 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 FO393413.1-201ENST00000402892 195 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 RNU2-64P-201ENST00000411315 191 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 AC012306.1-201ENST00000423267 114 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 WARS2P1-201ENST00000429678 537 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.66□□□□□ -1.98
HOXD9P28356 AP000705.1-201ENST00000454567 350 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 SNRPGP7-201ENST00000469016 106 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 RPL30P12-201ENST00000474666 353 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.66□□□□□ -1.98
HOXD9P28356 SRIP1-201ENST00000489235 288 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 GZMAP1-201ENST00000503054 631 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 Y_RNA.673-201ENST00000516306 88 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 RNU6-1338P-201ENST00000516328 91 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 RNA5SP54-201ENST00000516951 92 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.66□□□□□ -1.98
HOXD9P28356 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.66□□□□□ -1.98
HOXD9P28356 AL391813.1-201ENST00000603098 260 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 AL078605.1-201ENST00000603529 500 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 AC005296.1-201ENST00000616145 209 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 IGHVIII-44-202ENST00000636235 289 ntBASIC2.66□□□□□ -1.98
HOXD9P28356 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.66□□□□□ -1.98
HOXD9P28356 SKIL-203ENST00000426052 2757 ntTSL 2 BASIC2.66□□□□□ -1.98
HOXD9P28356 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.65□□□□□ -1.98
HOXD9P28356 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.98
HOXD9P28356 RNU6-19P-201ENST00000384718 107 ntBASIC2.65□□□□□ -1.99
HOXD9P28356 SNORD12B-201ENST00000410433 91 ntBASIC2.65□□□□□ -1.99
HOXD9P28356 AC007215.1-201ENST00000464893 276 ntBASIC2.65□□□□□ -1.99
HOXD9P28356 RPL26P26-201ENST00000480251 434 ntBASIC2.65□□□□□ -1.99
HOXD9P28356 AC092185.1-201ENST00000491371 97 ntBASIC2.65□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 124.2 ms