Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AC092436.3-201ENST00000511788 257 ntBASIC0.48□□□□□ -2.33
HLA-DMBP28068 AC004812.1-201ENST00000540773 146 ntBASIC0.48□□□□□ -2.33
HLA-DMBP28068 MTCO3P23-201ENST00000561363 289 ntBASIC0.48□□□□□ -2.33
HLA-DMBP28068 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC0.48□□□□□ -2.33
HLA-DMBP28068 MIR4775-201ENST00000581168 75 ntBASIC0.48□□□□□ -2.33
HLA-DMBP28068 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.48□□□□□ -2.33
HLA-DMBP28068 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.48□□□□□ -2.33
HLA-DMBP28068 RNU5E-5P-201ENST00000365379 116 ntBASIC0.47□□□□□ -2.33
HLA-DMBP28068 RNU1-139P-201ENST00000391307 165 ntBASIC0.47□□□□□ -2.33
HLA-DMBP28068 RNU4-46P-201ENST00000410818 138 ntBASIC0.47□□□□□ -2.33
HLA-DMBP28068 RPS3AP1-201ENST00000413190 320 ntBASIC0.47□□□□□ -2.33
HLA-DMBP28068 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC0.47□□□□□ -2.33
HLA-DMBP28068 AC010154.1-201ENST00000425857 269 ntBASIC0.47□□□□□ -2.33
HLA-DMBP28068 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.47□□□□□ -2.33
HLA-DMBP28068 AL596276.1-201ENST00000434465 418 ntBASIC0.47□□□□□ -2.33
HLA-DMBP28068 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC0.47□□□□□ -2.33
HLA-DMBP28068 MTCO3P18-201ENST00000440206 761 ntBASIC0.47□□□□□ -2.33
HLA-DMBP28068 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.47□□□□□ -2.33
HLA-DMBP28068 AC016717.1-201ENST00000448918 286 ntBASIC0.47□□□□□ -2.33
HLA-DMBP28068 AL031274.1-201ENST00000450334 232 ntBASIC0.47□□□□□ -2.33
HLA-DMBP28068 AC105758.1-201ENST00000506038 399 ntBASIC0.47□□□□□ -2.33
HLA-DMBP28068 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC0.47□□□□□ -2.33
HLA-DMBP28068 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC0.47□□□□□ -2.33
HLA-DMBP28068 SNORD27.1-201ENST00000516319 72 ntBASIC0.47□□□□□ -2.33
HLA-DMBP28068 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.47□□□□□ -2.33
HLA-DMBP28068 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC0.47□□□□□ -2.33
HLA-DMBP28068 AC016256.1-201ENST00000547971 354 ntBASIC0.47□□□□□ -2.33
HLA-DMBP28068 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.47□□□□□ -2.33
HLA-DMBP28068 AC025423.5-201ENST00000550230 219 ntBASIC0.47□□□□□ -2.33
HLA-DMBP28068 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC0.47□□□□□ -2.33
HLA-DMBP28068 GHRLOS.1-201ENST00000610995 70 ntBASIC0.47□□□□□ -2.33
HLA-DMBP28068 AC027807.2-201ENST00000616099 408 ntBASIC0.47□□□□□ -2.33
HLA-DMBP28068 AC005562.2-201ENST00000618264 111 ntBASIC0.47□□□□□ -2.33
HLA-DMBP28068 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC0.47□□□□□ -2.33
HLA-DMBP28068 IST1-227ENST00000626438 126 ntTSL 5 BASIC0.47□□□□□ -2.33
HLA-DMBP28068 MYCBP2-AS1-209ENST00000631152 412 ntTSL 5 BASIC0.47□□□□□ -2.33
HLA-DMBP28068 U6.108-201ENST00000637764 58 ntBASIC0.47□□□□□ -2.33
HLA-DMBP28068 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.47□□□□□ -2.33
HLA-DMBP28068 RNU6-969P-201ENST00000383900 105 ntBASIC0.46□□□□□ -2.34
HLA-DMBP28068 RNU6-417P-201ENST00000384712 107 ntBASIC0.46□□□□□ -2.34
HLA-DMBP28068 RNU6-1105P-201ENST00000384774 107 ntBASIC0.46□□□□□ -2.34
HLA-DMBP28068 MIR653-201ENST00000385279 96 ntBASIC0.46□□□□□ -2.34
HLA-DMBP28068 MIR454-201ENST00000390180 115 ntBASIC0.46□□□□□ -2.34
HLA-DMBP28068 SNORA12.1-201ENST00000390873 148 ntBASIC0.46□□□□□ -2.34
HLA-DMBP28068 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.46□□□□□ -2.34
HLA-DMBP28068 AL356583.2-201ENST00000426536 280 ntBASIC0.46□□□□□ -2.34
HLA-DMBP28068 AC079781.2-201ENST00000446424 169 ntBASIC0.46□□□□□ -2.34
HLA-DMBP28068 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.46□□□□□ -2.34
HLA-DMBP28068 USP9YP12-201ENST00000450481 570 ntBASIC0.46□□□□□ -2.34
HLA-DMBP28068 AL162395.1-201ENST00000457882 422 ntBASIC0.46□□□□□ -2.34
HLA-DMBP28068 RPS27P22-201ENST00000478056 241 ntBASIC0.46□□□□□ -2.34
HLA-DMBP28068 RPS26P48-201ENST00000491713 339 ntBASIC0.46□□□□□ -2.34
HLA-DMBP28068 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC0.46□□□□□ -2.34
HLA-DMBP28068 RNU2-69P-201ENST00000516061 100 ntBASIC0.46□□□□□ -2.34
HLA-DMBP28068 RNU6-410P-201ENST00000517006 107 ntBASIC0.46□□□□□ -2.34
HLA-DMBP28068 RNU2-46P-201ENST00000517038 113 ntBASIC0.46□□□□□ -2.34
HLA-DMBP28068 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.46□□□□□ -2.34
HLA-DMBP28068 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.46□□□□□ -2.34
HLA-DMBP28068 AC026470.2-201ENST00000561492 181 ntBASIC0.46□□□□□ -2.34
HLA-DMBP28068 AL391840.1-201ENST00000571144 367 ntBASIC0.46□□□□□ -2.34
HLA-DMBP28068 AC022217.4-201ENST00000604389 163 ntBASIC0.46□□□□□ -2.34
HLA-DMBP28068 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.46□□□□□ -2.34
HLA-DMBP28068 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.46□□□□□ -2.34
HLA-DMBP28068 PVT1_3.1-201ENST00000620853 95 ntBASIC0.46□□□□□ -2.34
HLA-DMBP28068 AL513423.1-201ENST00000621695 132 ntBASIC0.46□□□□□ -2.34
HLA-DMBP28068 SNORD3E-202ENST00000627253 216 ntBASIC0.46□□□□□ -2.34
HLA-DMBP28068 AC068700.1-201ENST00000565862 3754 ntBASIC0.46□□□□□ -2.34
HLA-DMBP28068 RNA5SP361-201ENST00000362686 118 ntBASIC0.45□□□□□ -2.34
HLA-DMBP28068 RNU6-74P-201ENST00000384235 107 ntBASIC0.45□□□□□ -2.34
HLA-DMBP28068 RNU6-434P-201ENST00000384376 107 ntBASIC0.45□□□□□ -2.34
HLA-DMBP28068 RNU6-393P-201ENST00000384475 107 ntBASIC0.45□□□□□ -2.34
HLA-DMBP28068 SNORA80D-201ENST00000384488 135 ntBASIC0.45□□□□□ -2.34
HLA-DMBP28068 MIR605-201ENST00000385078 83 ntBASIC0.45□□□□□ -2.34
HLA-DMBP28068 MIR92A1-201ENST00000385233 78 ntBASIC0.45□□□□□ -2.34
HLA-DMBP28068 RNA5SP467-201ENST00000391274 118 ntBASIC0.45□□□□□ -2.34
HLA-DMBP28068 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC0.45□□□□□ -2.34
HLA-DMBP28068 RN7SKP200-201ENST00000410564 320 ntBASIC0.45□□□□□ -2.34
HLA-DMBP28068 AL008987.1-201ENST00000415528 237 ntBASIC0.45□□□□□ -2.34
HLA-DMBP28068 TIMM9P3-201ENST00000428659 274 ntBASIC0.45□□□□□ -2.34
HLA-DMBP28068 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC0.45□□□□□ -2.34
HLA-DMBP28068 AL009048.1-201ENST00000450437 298 ntBASIC0.45□□□□□ -2.34
HLA-DMBP28068 RNA5SP255-201ENST00000516370 107 ntBASIC0.45□□□□□ -2.34
HLA-DMBP28068 RNU6-1069P-201ENST00000516612 133 ntBASIC0.45□□□□□ -2.34
HLA-DMBP28068 RNU6-405P-201ENST00000516637 110 ntBASIC0.45□□□□□ -2.34
HLA-DMBP28068 Vault.3-201ENST00000516676 95 ntBASIC0.45□□□□□ -2.34
HLA-DMBP28068 RNU6-922P-201ENST00000516753 99 ntBASIC0.45□□□□□ -2.34
HLA-DMBP28068 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.45□□□□□ -2.34
HLA-DMBP28068 AC002044.1-201ENST00000606707 158 ntBASIC0.45□□□□□ -2.34
HLA-DMBP28068 TCL6_2.1-201ENST00000615162 119 ntBASIC0.45□□□□□ -2.34
HLA-DMBP28068 MIR6513-201ENST00000621188 64 ntBASIC0.45□□□□□ -2.34
HLA-DMBP28068 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.45□□□□□ -2.34
HLA-DMBP28068 RNA5SP347-201ENST00000362445 119 ntBASIC0.44□□□□□ -2.34
HLA-DMBP28068 Y_RNA.112-201ENST00000363250 102 ntBASIC0.44□□□□□ -2.34
HLA-DMBP28068 RNU6-342P-201ENST00000384521 104 ntBASIC0.44□□□□□ -2.34
HLA-DMBP28068 MIR549A-201ENST00000385268 96 ntBASIC0.44□□□□□ -2.34
HLA-DMBP28068 SNORD41-201ENST00000386967 70 ntBASIC0.44□□□□□ -2.34
HLA-DMBP28068 SNORA16.2-201ENST00000390991 127 ntBASIC0.44□□□□□ -2.34
HLA-DMBP28068 RPS26P42-201ENST00000413485 326 ntBASIC0.44□□□□□ -2.34
HLA-DMBP28068 RPS26P5-201ENST00000418544 335 ntBASIC0.44□□□□□ -2.34
HLA-DMBP28068 AC098592.1-201ENST00000419352 333 ntBASIC0.44□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms