Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 AC026271.5-201ENST00000577873 130 ntBASIC3.85□□□□□ -1.79
CCDC9Q9Y3X0 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC9Q9Y3X0 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC9Q9Y3X0 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
CCDC9Q9Y3X0 Y_RNA.252-201ENST00000364556 101 ntBASIC3.84□□□□□ -1.79
CCDC9Q9Y3X0 SNORD42.2-201ENST00000365570 69 ntBASIC3.84□□□□□ -1.79
CCDC9Q9Y3X0 Y_RNA.445-201ENST00000384168 102 ntBASIC3.84□□□□□ -1.79
CCDC9Q9Y3X0 RNU2-48P-201ENST00000410694 191 ntBASIC3.84□□□□□ -1.79
CCDC9Q9Y3X0 RNU7-169P-201ENST00000459456 61 ntBASIC3.84□□□□□ -1.79
CCDC9Q9Y3X0 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC3.84□□□□□ -1.79
CCDC9Q9Y3X0 RNA5SP148-201ENST00000516527 94 ntBASIC3.84□□□□□ -1.79
CCDC9Q9Y3X0 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC3.84□□□□□ -1.79
CCDC9Q9Y3X0 SNRPGP17-201ENST00000603780 214 ntBASIC3.84□□□□□ -1.79
CCDC9Q9Y3X0 MAPK10-266ENST00000641066 6555 ntBASIC3.84□□□□□ -1.8
CCDC9Q9Y3X0 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.84□□□□□ -1.8
CCDC9Q9Y3X0 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
CCDC9Q9Y3X0 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
CCDC9Q9Y3X0 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.84□□□□□ -1.8
CCDC9Q9Y3X0 AC096644.4-201ENST00000563417 2912 ntBASIC3.84□□□□□ -1.8
CCDC9Q9Y3X0 RNU1-148P-201ENST00000384472 162 ntBASIC3.83□□□□□ -1.8
CCDC9Q9Y3X0 Y_RNA.557-201ENST00000384680 107 ntBASIC3.83□□□□□ -1.8
CCDC9Q9Y3X0 MIR628-201ENST00000385229 95 ntBASIC3.83□□□□□ -1.8
CCDC9Q9Y3X0 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.83□□□□□ -1.8
CCDC9Q9Y3X0 RNU6-991P-201ENST00000516168 107 ntBASIC3.83□□□□□ -1.8
CCDC9Q9Y3X0 MIR2355-201ENST00000517199 87 ntBASIC3.83□□□□□ -1.8
CCDC9Q9Y3X0 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC3.83□□□□□ -1.8
CCDC9Q9Y3X0 SNRPGP18-201ENST00000553000 214 ntBASIC3.83□□□□□ -1.8
CCDC9Q9Y3X0 AL161431.1-201ENST00000618966 4205 ntBASIC3.83□□□□□ -1.8
CCDC9Q9Y3X0 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.83□□□□□ -1.8
CCDC9Q9Y3X0 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
CCDC9Q9Y3X0 Y_RNA.395-201ENST00000383945 109 ntBASIC3.82□□□□□ -1.8
CCDC9Q9Y3X0 AC096638.1-201ENST00000444678 216 ntBASIC3.82□□□□□ -1.8
CCDC9Q9Y3X0 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC9Q9Y3X0 PRELID3BP1-201ENST00000457142 540 ntBASIC3.82□□□□□ -1.8
CCDC9Q9Y3X0 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC3.82□□□□□ -1.8
CCDC9Q9Y3X0 Y_RNA.676-201ENST00000516393 96 ntBASIC3.82□□□□□ -1.8
CCDC9Q9Y3X0 SCARNA20.6-201ENST00000517251 106 ntBASIC3.82□□□□□ -1.8
CCDC9Q9Y3X0 AC022868.1-201ENST00000517767 391 ntBASIC3.82□□□□□ -1.8
CCDC9Q9Y3X0 AC093023.1-201ENST00000547375 507 ntBASIC3.82□□□□□ -1.8
CCDC9Q9Y3X0 AC087588.2-201ENST00000617667 426 ntBASIC3.82□□□□□ -1.8
CCDC9Q9Y3X0 MPP6-209ENST00000625307 126 ntTSL 5 BASIC3.82□□□□□ -1.8
CCDC9Q9Y3X0 Y_RNA.5-201ENST00000362334 102 ntBASIC3.81□□□□□ -1.8
CCDC9Q9Y3X0 RNU1-62P-201ENST00000362599 164 ntBASIC3.81□□□□□ -1.8
CCDC9Q9Y3X0 Y_RNA.112-201ENST00000363250 102 ntBASIC3.81□□□□□ -1.8
CCDC9Q9Y3X0 RNU6-879P-201ENST00000364328 108 ntBASIC3.81□□□□□ -1.8
CCDC9Q9Y3X0 SNORA3.2-201ENST00000408221 125 ntBASIC3.81□□□□□ -1.8
CCDC9Q9Y3X0 Y_RNA.592-201ENST00000410274 109 ntBASIC3.81□□□□□ -1.8
CCDC9Q9Y3X0 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC9Q9Y3X0 HMGN2P18-201ENST00000450680 270 ntBASIC3.81□□□□□ -1.8
CCDC9Q9Y3X0 AC010401.1-201ENST00000463867 348 ntBASIC3.81□□□□□ -1.8
CCDC9Q9Y3X0 HMGN1P10-201ENST00000474557 553 ntBASIC3.81□□□□□ -1.8
CCDC9Q9Y3X0 AC021205.2-201ENST00000480069 347 ntBASIC3.81□□□□□ -1.8
CCDC9Q9Y3X0 SCARNA15.1-201ENST00000516384 125 ntBASIC3.81□□□□□ -1.8
CCDC9Q9Y3X0 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC3.81□□□□□ -1.8
CCDC9Q9Y3X0 uc_338.22-201ENST00000622722 187 ntBASIC3.81□□□□□ -1.8
CCDC9Q9Y3X0 Y_RNA.39-201ENST00000362620 98 ntBASIC3.8□□□□□ -1.8
CCDC9Q9Y3X0 Y_RNA.179-201ENST00000363844 90 ntBASIC3.8□□□□□ -1.8
CCDC9Q9Y3X0 RNU1-112P-201ENST00000364401 164 ntBASIC3.8□□□□□ -1.8
CCDC9Q9Y3X0 RNU4-42P-201ENST00000364738 142 ntBASIC3.8□□□□□ -1.8
CCDC9Q9Y3X0 SNORD31B-201ENST00000364977 69 ntBASIC3.8□□□□□ -1.8
CCDC9Q9Y3X0 AL138827.1-201ENST00000402666 306 ntBASIC3.8□□□□□ -1.8
CCDC9Q9Y3X0 SRIP3-201ENST00000413200 219 ntBASIC3.8□□□□□ -1.8
CCDC9Q9Y3X0 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC9Q9Y3X0 EIF1P2-201ENST00000428233 350 ntBASIC3.8□□□□□ -1.8
CCDC9Q9Y3X0 AL137159.1-201ENST00000452808 512 ntBASIC3.8□□□□□ -1.8
CCDC9Q9Y3X0 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC9Q9Y3X0 RN7SL20P-201ENST00000488827 297 ntBASIC3.8□□□□□ -1.8
CCDC9Q9Y3X0 AC093259.1-201ENST00000509755 300 ntBASIC3.8□□□□□ -1.8
CCDC9Q9Y3X0 ATP5EP1-201ENST00000510257 156 ntBASIC3.8□□□□□ -1.8
CCDC9Q9Y3X0 RNU6-344P-201ENST00000516635 111 ntBASIC3.8□□□□□ -1.8
CCDC9Q9Y3X0 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.8□□□□□ -1.8
CCDC9Q9Y3X0 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC9Q9Y3X0 AC092447.9-201ENST00000603395 144 ntBASIC3.8□□□□□ -1.8
CCDC9Q9Y3X0 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC9Q9Y3X0 PART1_1.1-201ENST00000611761 217 ntBASIC3.8□□□□□ -1.8
CCDC9Q9Y3X0 AC010999.1-201ENST00000611856 324 ntBASIC3.8□□□□□ -1.8
CCDC9Q9Y3X0 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
CCDC9Q9Y3X0 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC9Q9Y3X0 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
CCDC9Q9Y3X0 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC9Q9Y3X0 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC9Q9Y3X0 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC9Q9Y3X0 RNY3P11-201ENST00000364153 102 ntBASIC3.79□□□□□ -1.8
CCDC9Q9Y3X0 RNU1-115P-201ENST00000365329 160 ntBASIC3.79□□□□□ -1.8
CCDC9Q9Y3X0 Y_RNA.394-201ENST00000383942 103 ntBASIC3.79□□□□□ -1.8
CCDC9Q9Y3X0 RNU6-793P-201ENST00000384233 104 ntBASIC3.79□□□□□ -1.8
CCDC9Q9Y3X0 MIR300-201ENST00000401138 83 ntBASIC3.79□□□□□ -1.8
CCDC9Q9Y3X0 AC245102.2-201ENST00000448956 180 ntBASIC3.79□□□□□ -1.8
CCDC9Q9Y3X0 AL139109.1-201ENST00000455491 297 ntBASIC3.79□□□□□ -1.8
CCDC9Q9Y3X0 RNU1-143P-201ENST00000516296 146 ntBASIC3.79□□□□□ -1.8
CCDC9Q9Y3X0 Y_RNA.701-201ENST00000516812 110 ntBASIC3.79□□□□□ -1.8
CCDC9Q9Y3X0 AC023442.1-201ENST00000531247 422 ntBASIC3.79□□□□□ -1.8
CCDC9Q9Y3X0 AC025754.2-201ENST00000606491 432 ntBASIC3.79□□□□□ -1.8
CCDC9Q9Y3X0 SNORD11B-201ENST00000607707 90 ntBASIC3.79□□□□□ -1.8
CCDC9Q9Y3X0 U1.23-201ENST00000610293 146 ntBASIC3.79□□□□□ -1.8
CCDC9Q9Y3X0 RNU1-68P-201ENST00000615382 146 ntBASIC3.79□□□□□ -1.8
CCDC9Q9Y3X0 AL138825.1-201ENST00000618587 192 ntBASIC3.79□□□□□ -1.8
CCDC9Q9Y3X0 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC3.79□□□□□ -1.8
CCDC9Q9Y3X0 U1.39-201ENST00000621562 146 ntBASIC3.79□□□□□ -1.8
CCDC9Q9Y3X0 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms