Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AC069528.2-201ENST00000624849 1991 ntBASIC3.62□□□□□ -1.83
HIF3AQ9Y2N7 DMXL1-201ENST00000311085 11072 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
HIF3AQ9Y2N7 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.61□□□□□ -1.83
HIF3AQ9Y2N7 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC3.61□□□□□ -1.83
HIF3AQ9Y2N7 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
HIF3AQ9Y2N7 Y_RNA.361-201ENST00000365515 120 ntBASIC3.61□□□□□ -1.83
HIF3AQ9Y2N7 MIR518C-201ENST00000384822 101 ntBASIC3.61□□□□□ -1.83
HIF3AQ9Y2N7 RNA5SP38-201ENST00000410750 119 ntBASIC3.61□□□□□ -1.83
HIF3AQ9Y2N7 Z75741.1-201ENST00000446793 314 ntBASIC3.61□□□□□ -1.83
HIF3AQ9Y2N7 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC3.61□□□□□ -1.83
HIF3AQ9Y2N7 SNORA70.12-201ENST00000516084 153 ntBASIC3.61□□□□□ -1.83
HIF3AQ9Y2N7 AP003730.1-201ENST00000524605 285 ntBASIC3.61□□□□□ -1.83
HIF3AQ9Y2N7 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.61□□□□□ -1.83
HIF3AQ9Y2N7 ARF4P1-201ENST00000605447 541 ntBASIC3.61□□□□□ -1.83
HIF3AQ9Y2N7 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.61□□□□□ -1.83
HIF3AQ9Y2N7 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.61□□□□□ -1.83
HIF3AQ9Y2N7 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.61□□□□□ -1.83
HIF3AQ9Y2N7 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC3.6□□□□□ -1.83
HIF3AQ9Y2N7 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.6□□□□□ -1.83
HIF3AQ9Y2N7 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
HIF3AQ9Y2N7 U3.8-201ENST00000363675 217 ntBASIC3.6□□□□□ -1.83
HIF3AQ9Y2N7 SNORA70.2-201ENST00000364506 135 ntBASIC3.6□□□□□ -1.83
HIF3AQ9Y2N7 SNORA67.2-201ENST00000384300 149 ntBASIC3.6□□□□□ -1.83
HIF3AQ9Y2N7 SNORD116-13-201ENST00000384408 92 ntBASIC3.6□□□□□ -1.83
HIF3AQ9Y2N7 SNORA12-201ENST00000391162 147 ntBASIC3.6□□□□□ -1.83
HIF3AQ9Y2N7 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
HIF3AQ9Y2N7 RNU4-43P-201ENST00000410628 137 ntBASIC3.6□□□□□ -1.83
HIF3AQ9Y2N7 AC063976.4-201ENST00000421971 163 ntBASIC3.6□□□□□ -1.83
HIF3AQ9Y2N7 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.6□□□□□ -1.83
HIF3AQ9Y2N7 AC083863.1-201ENST00000438811 231 ntBASIC3.6□□□□□ -1.83
HIF3AQ9Y2N7 RPL23AP62-201ENST00000463396 453 ntBASIC3.6□□□□□ -1.83
HIF3AQ9Y2N7 AC112771.1-201ENST00000463581 102 ntBASIC3.6□□□□□ -1.83
HIF3AQ9Y2N7 RNU7-115P-201ENST00000516433 55 ntBASIC3.6□□□□□ -1.83
HIF3AQ9Y2N7 MIR3138-201ENST00000585238 82 ntBASIC3.6□□□□□ -1.83
HIF3AQ9Y2N7 AC110741.2-201ENST00000605278 268 ntBASIC3.6□□□□□ -1.83
HIF3AQ9Y2N7 U6.95-201ENST00000636931 70 ntBASIC3.6□□□□□ -1.83
HIF3AQ9Y2N7 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC3.6□□□□□ -1.83
HIF3AQ9Y2N7 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC3.6□□□□□ -1.83
HIF3AQ9Y2N7 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC3.6□□□□□ -1.83
HIF3AQ9Y2N7 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HIF3AQ9Y2N7 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
HIF3AQ9Y2N7 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
HIF3AQ9Y2N7 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.59□□□□□ -1.83
HIF3AQ9Y2N7 RNU6-1305P-201ENST00000364353 104 ntBASIC3.59□□□□□ -1.83
HIF3AQ9Y2N7 SNORA79-201ENST00000408376 140 ntBASIC3.59□□□□□ -1.83
HIF3AQ9Y2N7 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.59□□□□□ -1.83
HIF3AQ9Y2N7 AC093331.1-201ENST00000521474 169 ntBASIC3.59□□□□□ -1.83
HIF3AQ9Y2N7 AL360157.1-201ENST00000565962 87 ntBASIC3.59□□□□□ -1.83
HIF3AQ9Y2N7 MIR378D2-201ENST00000580636 98 ntBASIC3.59□□□□□ -1.83
HIF3AQ9Y2N7 RN7SL600P-201ENST00000581811 299 ntBASIC3.59□□□□□ -1.83
HIF3AQ9Y2N7 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.59□□□□□ -1.83
HIF3AQ9Y2N7 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC3.59□□□□□ -1.83
HIF3AQ9Y2N7 RNU1-30P-201ENST00000606575 163 ntBASIC3.59□□□□□ -1.83
HIF3AQ9Y2N7 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HIF3AQ9Y2N7 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
HIF3AQ9Y2N7 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 ZNF415-207ENST00000595193 2479 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 snoU2_19.1-201ENST00000362361 80 ntBASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 Y_RNA.309-201ENST00000365046 111 ntBASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 Y_RNA.587-201ENST00000391210 103 ntBASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 MLLT10P1-201ENST00000418346 262 ntBASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 AL358232.1-201ENST00000448030 501 ntBASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 SNRPGP8-201ENST00000454064 226 ntBASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 SRIP1-201ENST00000489235 288 ntBASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 AC026726.1-201ENST00000512859 601 ntBASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 AC079598.5-201ENST00000547460 117 ntBASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 AL670379.3-201ENST00000605040 251 ntBASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 RPL17P51-201ENST00000605218 238 ntBASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 MIR6868-201ENST00000611215 58 ntBASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 uc_338.14-201ENST00000613162 166 ntBASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 AL591424.2-201ENST00000617023 128 ntBASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 MIR6830-201ENST00000636015 70 ntBASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 AL513302.2-201ENST00000562313 1842 ntBASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 GCSAML-203ENST00000366491 4130 ntAPPRIS ALT2 TSL 2 BASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 AC008555.8-201ENST00000623602 2168 ntBASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC3.58□□□□□ -1.84
HIF3AQ9Y2N7 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.57□□□□□ -1.84
HIF3AQ9Y2N7 CDC27-207ENST00000531206 3177 ntAPPRIS ALT1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HIF3AQ9Y2N7 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HIF3AQ9Y2N7 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.57□□□□□ -1.84
HIF3AQ9Y2N7 SEC31A-215ENST00000505472 4159 ntTSL 5 BASIC3.57□□□□□ -1.84
HIF3AQ9Y2N7 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
HIF3AQ9Y2N7 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HIF3AQ9Y2N7 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HIF3AQ9Y2N7 Y_RNA.35-201ENST00000362601 101 ntBASIC3.57□□□□□ -1.84
HIF3AQ9Y2N7 RNA5SP399-201ENST00000364003 117 ntBASIC3.57□□□□□ -1.84
HIF3AQ9Y2N7 RNU6-597P-201ENST00000365620 102 ntBASIC3.57□□□□□ -1.84
HIF3AQ9Y2N7 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC3.57□□□□□ -1.84
HIF3AQ9Y2N7 RPL36AP48-201ENST00000485521 314 ntBASIC3.57□□□□□ -1.84
HIF3AQ9Y2N7 RNU6-1337P-201ENST00000516525 95 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms