Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RNU4-9P-201ENST00000364951 139 ntBASIC1.67□□□□□ -2.14
FOXA2Q9Y261 SNORD116-11-201ENST00000383882 92 ntBASIC1.67□□□□□ -2.14
FOXA2Q9Y261 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
FOXA2Q9Y261 AL513185.2-201ENST00000425543 193 ntBASIC1.67□□□□□ -2.14
FOXA2Q9Y261 AC074290.1-201ENST00000448883 135 ntBASIC1.67□□□□□ -2.14
FOXA2Q9Y261 AC010409.1-201ENST00000487382 476 ntBASIC1.67□□□□□ -2.14
FOXA2Q9Y261 RNU2-34P-201ENST00000516534 121 ntBASIC1.67□□□□□ -2.14
FOXA2Q9Y261 RRN3P3-201ENST00000549207 578 ntBASIC1.67□□□□□ -2.14
FOXA2Q9Y261 SUB1P4-201ENST00000566062 339 ntBASIC1.67□□□□□ -2.14
FOXA2Q9Y261 AP003465.2-201ENST00000602571 373 ntBASIC1.67□□□□□ -2.14
FOXA2Q9Y261 AC069114.2-201ENST00000604699 304 ntBASIC1.67□□□□□ -2.14
FOXA2Q9Y261 AC013412.1-201ENST00000610687 192 ntBASIC1.67□□□□□ -2.14
FOXA2Q9Y261 AC093913.1-201ENST00000614178 329 ntBASIC1.67□□□□□ -2.14
FOXA2Q9Y261 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.67□□□□□ -2.14
FOXA2Q9Y261 ZNF204P-201ENST00000416749 2397 ntBASIC1.67□□□□□ -2.14
FOXA2Q9Y261 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
FOXA2Q9Y261 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
FOXA2Q9Y261 AL356292.1-201ENST00000283110 373 ntBASIC1.66□□□□□ -2.14
FOXA2Q9Y261 U8.2-201ENST00000363156 134 ntBASIC1.66□□□□□ -2.14
FOXA2Q9Y261 Y_RNA.135-201ENST00000363439 95 ntBASIC1.66□□□□□ -2.14
FOXA2Q9Y261 Y_RNA.157-201ENST00000363638 102 ntBASIC1.66□□□□□ -2.14
FOXA2Q9Y261 RNU6-1013P-201ENST00000384180 107 ntBASIC1.66□□□□□ -2.14
FOXA2Q9Y261 MIR32-201ENST00000384965 70 ntBASIC1.66□□□□□ -2.14
FOXA2Q9Y261 SNORD115-47-201ENST00000391226 86 ntBASIC1.66□□□□□ -2.14
FOXA2Q9Y261 RNA5SP338-201ENST00000410495 85 ntBASIC1.66□□□□□ -2.14
FOXA2Q9Y261 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.66□□□□□ -2.14
FOXA2Q9Y261 AL358453.1-201ENST00000422522 250 ntBASIC1.66□□□□□ -2.14
FOXA2Q9Y261 MTND1P34-201ENST00000438556 671 ntBASIC1.66□□□□□ -2.14
FOXA2Q9Y261 NFU1P2-201ENST00000448700 469 ntBASIC1.66□□□□□ -2.14
FOXA2Q9Y261 AC079354.2-201ENST00000453523 154 ntBASIC1.66□□□□□ -2.14
FOXA2Q9Y261 AC112492.4-201ENST00000456549 352 ntBASIC1.66□□□□□ -2.14
FOXA2Q9Y261 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
FOXA2Q9Y261 AC067942.3-201ENST00000512025 362 ntBASIC1.66□□□□□ -2.14
FOXA2Q9Y261 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.66□□□□□ -2.14
FOXA2Q9Y261 Y_RNA.655-201ENST00000515919 96 ntBASIC1.66□□□□□ -2.14
FOXA2Q9Y261 RNU6-1041P-201ENST00000516254 102 ntBASIC1.66□□□□□ -2.14
FOXA2Q9Y261 RNU6-948P-201ENST00000516374 107 ntBASIC1.66□□□□□ -2.14
FOXA2Q9Y261 RNU6-856P-201ENST00000516959 98 ntBASIC1.66□□□□□ -2.14
FOXA2Q9Y261 RNU6-1314P-201ENST00000517139 104 ntBASIC1.66□□□□□ -2.14
FOXA2Q9Y261 SNORA59B-202ENST00000578183 701 ntBASIC1.66□□□□□ -2.14
FOXA2Q9Y261 MIR4448-201ENST00000584360 86 ntBASIC1.66□□□□□ -2.14
FOXA2Q9Y261 7SK.7-201ENST00000603504 247 ntBASIC1.66□□□□□ -2.14
FOXA2Q9Y261 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.66□□□□□ -2.14
FOXA2Q9Y261 AC009318.2-201ENST00000610917 651 ntBASIC1.66□□□□□ -2.14
FOXA2Q9Y261 AC006504.8-201ENST00000621046 635 ntBASIC1.66□□□□□ -2.14
FOXA2Q9Y261 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.66□□□□□ -2.14
FOXA2Q9Y261 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
FOXA2Q9Y261 BX322639.1-202ENST00000423987 2213 ntBASIC1.65□□□□□ -2.15
FOXA2Q9Y261 RNU6-862P-201ENST00000362804 105 ntBASIC1.65□□□□□ -2.15
FOXA2Q9Y261 RNA5SP126-201ENST00000365092 109 ntBASIC1.65□□□□□ -2.15
FOXA2Q9Y261 SNORA70B-201ENST00000384210 135 ntBASIC1.65□□□□□ -2.15
FOXA2Q9Y261 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC1.65□□□□□ -2.15
FOXA2Q9Y261 MTND4LP16-201ENST00000440828 295 ntBASIC1.65□□□□□ -2.15
FOXA2Q9Y261 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.65□□□□□ -2.15
FOXA2Q9Y261 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC1.65□□□□□ -2.15
FOXA2Q9Y261 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC1.65□□□□□ -2.15
FOXA2Q9Y261 RNA5SP54-201ENST00000516951 92 ntBASIC1.65□□□□□ -2.15
FOXA2Q9Y261 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.65□□□□□ -2.15
FOXA2Q9Y261 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.65□□□□□ -2.15
FOXA2Q9Y261 MIR3942-201ENST00000585264 109 ntBASIC1.65□□□□□ -2.15
FOXA2Q9Y261 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.65□□□□□ -2.15
FOXA2Q9Y261 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC1.65□□□□□ -2.15
FOXA2Q9Y261 DUXAP9-208ENST00000622815 614 ntBASIC1.65□□□□□ -2.15
FOXA2Q9Y261 MIR3688-2-201ENST00000636963 87 ntBASIC1.65□□□□□ -2.15
FOXA2Q9Y261 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
FOXA2Q9Y261 RNU6-661P-201ENST00000362409 107 ntBASIC1.64□□□□□ -2.15
FOXA2Q9Y261 RNU6-112P-201ENST00000363599 104 ntBASIC1.64□□□□□ -2.15
FOXA2Q9Y261 RNU6-1305P-201ENST00000364353 104 ntBASIC1.64□□□□□ -2.15
FOXA2Q9Y261 RNU6-306P-201ENST00000384617 107 ntBASIC1.64□□□□□ -2.15
FOXA2Q9Y261 MIR487A-201ENST00000385009 80 ntBASIC1.64□□□□□ -2.15
FOXA2Q9Y261 MIR30A-201ENST00000385092 71 ntBASIC1.64□□□□□ -2.15
FOXA2Q9Y261 RN7SKP32-201ENST00000410167 303 ntBASIC1.64□□□□□ -2.15
FOXA2Q9Y261 RNU2-7P-201ENST00000410794 178 ntBASIC1.64□□□□□ -2.15
FOXA2Q9Y261 EBAG9P1-201ENST00000418955 543 ntBASIC1.64□□□□□ -2.15
FOXA2Q9Y261 HSPE1P21-201ENST00000438283 308 ntBASIC1.64□□□□□ -2.15
FOXA2Q9Y261 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC1.64□□□□□ -2.15
FOXA2Q9Y261 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.64□□□□□ -2.15
FOXA2Q9Y261 HMGN2P23-201ENST00000456759 269 ntBASIC1.64□□□□□ -2.15
FOXA2Q9Y261 AC092989.1-201ENST00000481235 277 ntBASIC1.64□□□□□ -2.15
FOXA2Q9Y261 HMGN1P13-201ENST00000505795 138 ntBASIC1.64□□□□□ -2.15
FOXA2Q9Y261 AC008834.1-201ENST00000511612 175 ntBASIC1.64□□□□□ -2.15
FOXA2Q9Y261 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.64□□□□□ -2.15
FOXA2Q9Y261 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.64□□□□□ -2.15
FOXA2Q9Y261 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.64□□□□□ -2.15
FOXA2Q9Y261 MIR3198-2-201ENST00000577868 80 ntBASIC1.64□□□□□ -2.15
FOXA2Q9Y261 AC090517.2-201ENST00000614966 680 ntBASIC1.64□□□□□ -2.15
FOXA2Q9Y261 MIR219B-201ENST00000637023 88 ntBASIC1.64□□□□□ -2.15
FOXA2Q9Y261 AC092881.1-201ENST00000638218 2733 ntBASIC1.63□□□□□ -2.15
FOXA2Q9Y261 RNU1-96P-201ENST00000364163 162 ntBASIC1.63□□□□□ -2.15
FOXA2Q9Y261 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.63□□□□□ -2.15
FOXA2Q9Y261 RNU6-439P-201ENST00000384188 106 ntBASIC1.63□□□□□ -2.15
FOXA2Q9Y261 RNU6-975P-201ENST00000384296 105 ntBASIC1.63□□□□□ -2.15
FOXA2Q9Y261 RNU6-1235P-201ENST00000384559 107 ntBASIC1.63□□□□□ -2.15
FOXA2Q9Y261 SNORA64-201ENST00000384674 134 ntBASIC1.63□□□□□ -2.15
FOXA2Q9Y261 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
FOXA2Q9Y261 AC004866.1-201ENST00000411748 78 ntBASIC1.63□□□□□ -2.15
FOXA2Q9Y261 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.63□□□□□ -2.15
FOXA2Q9Y261 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.63□□□□□ -2.15
FOXA2Q9Y261 Z82188.1-201ENST00000436709 154 ntBASIC1.63□□□□□ -2.15
FOXA2Q9Y261 AC016717.1-201ENST00000448918 286 ntBASIC1.63□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 203.9 ms