Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC1.77□□□□□ -2.13
VPS54Q9P1Q0 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC1.77□□□□□ -2.13
VPS54Q9P1Q0 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.77□□□□□ -2.13
VPS54Q9P1Q0 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.77□□□□□ -2.13
VPS54Q9P1Q0 AC146944.4-201ENST00000602697 718 ntBASIC1.77□□□□□ -2.13
VPS54Q9P1Q0 AL645939.4-201ENST00000604495 135 ntBASIC1.77□□□□□ -2.13
VPS54Q9P1Q0 MIR8076-201ENST00000611401 83 ntBASIC1.77□□□□□ -2.13
VPS54Q9P1Q0 AL136221.1-201ENST00000621449 509 ntBASIC1.77□□□□□ -2.13
VPS54Q9P1Q0 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC1.77□□□□□ -2.13
VPS54Q9P1Q0 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 Y_RNA.89-201ENST00000363031 102 ntBASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 RNA5SP99-201ENST00000364020 114 ntBASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 SNORA18.2-201ENST00000383865 132 ntBASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 RNU6-1286P-201ENST00000383871 107 ntBASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 RNU6-128P-201ENST00000383976 107 ntBASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 RNU6-933P-201ENST00000384424 107 ntBASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 MIR549A-201ENST00000385268 96 ntBASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 SNORD115-47-201ENST00000391226 86 ntBASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 RNA5SP494-201ENST00000410653 129 ntBASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 AC123900.1-201ENST00000420390 96 ntBASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 MTCO3P18-201ENST00000440206 761 ntBASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 MTND1P11-201ENST00000456661 876 ntBASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 AC091435.1-201ENST00000505442 584 ntBASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 AC087441.2-201ENST00000529141 262 ntBASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 HSBP1P1-201ENST00000555205 166 ntBASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 MIR4303-201ENST00000581299 66 ntBASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 MIR4524B-201ENST00000581569 115 ntBASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 FGF7P1-201ENST00000582820 288 ntBASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 AL138726.1-201ENST00000614873 333 ntBASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 LINC02555-201ENST00000563933 1951 ntBASIC1.76□□□□□ -2.13
VPS54Q9P1Q0 MIR340-201ENST00000362125 95 ntBASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 RNU6-457P-201ENST00000363999 107 ntBASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 Y_RNA.295-201ENST00000364918 102 ntBASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 SNORA32.2-201ENST00000384049 122 ntBASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 RNU6-968P-201ENST00000384076 107 ntBASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 Y_RNA.530-201ENST00000384587 101 ntBASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 RNU6-95P-201ENST00000384697 107 ntBASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 MIR548F1-201ENST00000408667 84 ntBASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 SNRPEP10-201ENST00000420249 274 ntBASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 EIF4EP2-201ENST00000422816 654 ntBASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 AL035666.1-201ENST00000446195 348 ntBASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 AC092989.1-201ENST00000481235 277 ntBASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 RPS23P5-201ENST00000495419 428 ntBASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 RNVU1-2-201ENST00000516326 135 ntBASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 RNU6-256P-201ENST00000516747 97 ntBASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 DEFB131C-201ENST00000528817 165 ntBASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 AC016256.1-201ENST00000547971 354 ntBASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 AC015720.1-201ENST00000565251 277 ntBASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 MIR3169-201ENST00000578032 83 ntBASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 AL133215.3-201ENST00000609801 448 ntBASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 AC090617.10-201ENST00000624308 134 ntBASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 AC100810.6-201ENST00000638068 285 ntBASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
VPS54Q9P1Q0 RNU1-42P-201ENST00000364033 160 ntBASIC1.74□□□□□ -2.13
VPS54Q9P1Q0 RNU6-877P-201ENST00000383868 107 ntBASIC1.74□□□□□ -2.13
VPS54Q9P1Q0 Y_RNA.453-201ENST00000384223 109 ntBASIC1.74□□□□□ -2.13
VPS54Q9P1Q0 RNU6-790P-201ENST00000384479 105 ntBASIC1.74□□□□□ -2.13
VPS54Q9P1Q0 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.74□□□□□ -2.13
VPS54Q9P1Q0 MIR1304-201ENST00000408243 91 ntBASIC1.74□□□□□ -2.13
VPS54Q9P1Q0 ZNF885P-201ENST00000420174 1098 ntBASIC1.74□□□□□ -2.13
VPS54Q9P1Q0 AC139712.2-201ENST00000424302 339 ntBASIC1.74□□□□□ -2.13
VPS54Q9P1Q0 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC1.74□□□□□ -2.13
VPS54Q9P1Q0 Z82205.1-201ENST00000428456 297 ntBASIC1.74□□□□□ -2.13
VPS54Q9P1Q0 AF186996.7-201ENST00000492781 209 ntBASIC1.74□□□□□ -2.13
VPS54Q9P1Q0 MTCYBP18-201ENST00000501056 747 ntBASIC1.74□□□□□ -2.13
VPS54Q9P1Q0 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.74□□□□□ -2.13
VPS54Q9P1Q0 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.74□□□□□ -2.13
VPS54Q9P1Q0 AC023043.2-201ENST00000589678 1026 ntBASIC1.74□□□□□ -2.13
VPS54Q9P1Q0 AC016727.2-201ENST00000603988 621 ntBASIC1.74□□□□□ -2.13
VPS54Q9P1Q0 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.74□□□□□ -2.13
VPS54Q9P1Q0 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
VPS54Q9P1Q0 uc_338.5-201ENST00000611839 155 ntBASIC1.74□□□□□ -2.13
VPS54Q9P1Q0 RNU6-545P-201ENST00000362681 104 ntBASIC1.73□□□□□ -2.13
VPS54Q9P1Q0 RNU6-562P-201ENST00000362731 107 ntBASIC1.73□□□□□ -2.13
VPS54Q9P1Q0 RNU1-76P-201ENST00000362903 159 ntBASIC1.73□□□□□ -2.13
VPS54Q9P1Q0 RNU4-13P-201ENST00000364019 141 ntBASIC1.73□□□□□ -2.13
VPS54Q9P1Q0 RNU6-60P-201ENST00000364792 103 ntBASIC1.73□□□□□ -2.13
VPS54Q9P1Q0 RNU6-534P-201ENST00000364877 106 ntBASIC1.73□□□□□ -2.13
VPS54Q9P1Q0 Y_RNA.414-201ENST00000384011 101 ntBASIC1.73□□□□□ -2.13
VPS54Q9P1Q0 RNU6-784P-201ENST00000384330 106 ntBASIC1.73□□□□□ -2.13
VPS54Q9P1Q0 MIR320A-201ENST00000385302 82 ntBASIC1.73□□□□□ -2.13
VPS54Q9P1Q0 AL513185.2-201ENST00000425543 193 ntBASIC1.73□□□□□ -2.13
VPS54Q9P1Q0 PCMTD1P1-201ENST00000455560 355 ntBASIC1.73□□□□□ -2.13
VPS54Q9P1Q0 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.73□□□□□ -2.13
VPS54Q9P1Q0 RNU6-718P-201ENST00000516166 105 ntBASIC1.73□□□□□ -2.13
VPS54Q9P1Q0 SNORD53B-201ENST00000577887 78 ntBASIC1.73□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 125.1 ms