Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.06□□□□□ -2.08
CHMP1AQ9HD42 AP000870.1-201ENST00000472927 406 ntBASIC2.06□□□□□ -2.08
CHMP1AQ9HD42 RNU4ATAC7P-201ENST00000516280 125 ntBASIC2.06□□□□□ -2.08
CHMP1AQ9HD42 RNU2-19P-201ENST00000517288 84 ntBASIC2.06□□□□□ -2.08
CHMP1AQ9HD42 UBL5P4-201ENST00000562584 236 ntBASIC2.06□□□□□ -2.08
CHMP1AQ9HD42 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.06□□□□□ -2.08
CHMP1AQ9HD42 AC005899.2-201ENST00000584353 90 ntBASIC2.06□□□□□ -2.08
CHMP1AQ9HD42 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.06□□□□□ -2.08
CHMP1AQ9HD42 Y_RNA.804-201ENST00000615262 101 ntBASIC2.06□□□□□ -2.08
CHMP1AQ9HD42 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC2.06□□□□□ -2.08
CHMP1AQ9HD42 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC2.06□□□□□ -2.08
CHMP1AQ9HD42 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
CHMP1AQ9HD42 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.06□□□□□ -2.08
CHMP1AQ9HD42 RNU6-137P-201ENST00000363680 108 ntBASIC2.05□□□□□ -2.08
CHMP1AQ9HD42 RNU6-438P-201ENST00000365561 103 ntBASIC2.05□□□□□ -2.08
CHMP1AQ9HD42 RNU6-1297P-201ENST00000384415 104 ntBASIC2.05□□□□□ -2.08
CHMP1AQ9HD42 MIR196B-201ENST00000384852 84 ntBASIC2.05□□□□□ -2.08
CHMP1AQ9HD42 MIR128-1-201ENST00000384921 82 ntBASIC2.05□□□□□ -2.08
CHMP1AQ9HD42 SNORA75.6-201ENST00000391318 127 ntBASIC2.05□□□□□ -2.08
CHMP1AQ9HD42 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC2.05□□□□□ -2.08
CHMP1AQ9HD42 HMGN2P38-201ENST00000423806 265 ntBASIC2.05□□□□□ -2.08
CHMP1AQ9HD42 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC2.05□□□□□ -2.08
CHMP1AQ9HD42 AC245102.2-201ENST00000448956 180 ntBASIC2.05□□□□□ -2.08
CHMP1AQ9HD42 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.05□□□□□ -2.08
CHMP1AQ9HD42 AC008549.1-201ENST00000512900 643 ntBASIC2.05□□□□□ -2.08
CHMP1AQ9HD42 RNU6-1198P-201ENST00000516904 67 ntBASIC2.05□□□□□ -2.08
CHMP1AQ9HD42 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.05□□□□□ -2.08
CHMP1AQ9HD42 AC093027.1-201ENST00000546698 429 ntBASIC2.05□□□□□ -2.08
CHMP1AQ9HD42 LARP7P1-201ENST00000605576 316 ntBASIC2.05□□□□□ -2.08
CHMP1AQ9HD42 AC100812.1-201ENST00000607622 580 ntBASIC2.05□□□□□ -2.08
CHMP1AQ9HD42 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
CHMP1AQ9HD42 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.05□□□□□ -2.08
CHMP1AQ9HD42 AL359851.1-201ENST00000569460 4997 ntBASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 RNU6-222P-201ENST00000362438 107 ntBASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 Y_RNA.106-201ENST00000363189 100 ntBASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 RNU6-873P-201ENST00000363833 107 ntBASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 RNU6-890P-201ENST00000384121 107 ntBASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 SNORA67.2-201ENST00000384300 149 ntBASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 RNU6-1026P-201ENST00000384465 108 ntBASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 RNU6-541P-201ENST00000384709 110 ntBASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 MIR10B-201ENST00000385011 110 ntBASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 MIR27B-201ENST00000385129 97 ntBASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 SNORA40.19-201ENST00000390846 128 ntBASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 RNU2-52P-201ENST00000410680 190 ntBASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 RNA5SP450-201ENST00000411206 102 ntBASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 RPS3AP12-201ENST00000443616 753 ntBASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 Y_RNA.632-201ENST00000459189 102 ntBASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 Y_RNA.706-201ENST00000516933 99 ntBASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 RRN3P3-201ENST00000549207 578 ntBASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 MIR4529-201ENST00000578110 78 ntBASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.04□□□□□ -2.08
CHMP1AQ9HD42 ZNF720P1-201ENST00000562403 1939 ntBASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 CENPCP1-201ENST00000533085 2578 ntBASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 MIR21-201ENST00000362134 72 ntBASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 Y_RNA.384-201ENST00000383909 102 ntBASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 RNU6-245P-201ENST00000384020 107 ntBASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 RNA5SP213-201ENST00000391031 106 ntBASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 MIR190B-201ENST00000401119 79 ntBASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 MIR1283-1-201ENST00000408494 87 ntBASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 AC139712.2-201ENST00000424302 339 ntBASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 RPL23AP50-201ENST00000434149 455 ntBASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 MTCO1P44-201ENST00000441935 243 ntBASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 RPL30P15-201ENST00000457129 321 ntBASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 AC010531.2-201ENST00000465012 153 ntBASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 RPL17P19-201ENST00000489069 552 ntBASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 AC079804.2-201ENST00000490376 200 ntBASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 SNORA25.14-201ENST00000516481 132 ntBASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 RNU6-307P-201ENST00000516743 106 ntBASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 Y_RNA.718-201ENST00000517110 102 ntBASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 GTF3AP2-201ENST00000557014 266 ntBASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 MIR3169-201ENST00000578032 83 ntBASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 AL590240.4-201ENST00000616908 390 ntBASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 LINC02555-201ENST00000563933 1951 ntBASIC2.03□□□□□ -2.08
CHMP1AQ9HD42 RNU1-58P-201ENST00000362413 163 ntBASIC2.02□□□□□ -2.09
CHMP1AQ9HD42 Y_RNA.67-201ENST00000362870 100 ntBASIC2.02□□□□□ -2.09
CHMP1AQ9HD42 RNA5SP493-201ENST00000364115 91 ntBASIC2.02□□□□□ -2.09
CHMP1AQ9HD42 RNU6-160P-201ENST00000384591 107 ntBASIC2.02□□□□□ -2.09
CHMP1AQ9HD42 MIR597-201ENST00000384968 97 ntBASIC2.02□□□□□ -2.09
CHMP1AQ9HD42 RNU6-700P-201ENST00000391043 107 ntBASIC2.02□□□□□ -2.09
CHMP1AQ9HD42 RNY4P36-201ENST00000391116 96 ntBASIC2.02□□□□□ -2.09
CHMP1AQ9HD42 MTCYBP4-201ENST00000401524 249 ntBASIC2.02□□□□□ -2.09
CHMP1AQ9HD42 MIR320B2-201ENST00000408479 138 ntBASIC2.02□□□□□ -2.09
CHMP1AQ9HD42 RNA5SP504-201ENST00000410676 117 ntBASIC2.02□□□□□ -2.09
CHMP1AQ9HD42 MTCYBP10-201ENST00000424905 650 ntBASIC2.02□□□□□ -2.09
CHMP1AQ9HD42 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
CHMP1AQ9HD42 HMGN2P3-201ENST00000433603 273 ntBASIC2.02□□□□□ -2.09
CHMP1AQ9HD42 HMGN2P5-201ENST00000436882 273 ntBASIC2.02□□□□□ -2.09
CHMP1AQ9HD42 ELOCP24-201ENST00000456370 334 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms