Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 MRPS36P4-201ENST00000534436 298 ntBASIC2.24□□□□□ -2.05
ZNF541Q9H0D2 MYL12BP1-201ENST00000569826 507 ntBASIC2.24□□□□□ -2.05
ZNF541Q9H0D2 AC099654.14-201ENST00000638599 341 ntBASIC2.24□□□□□ -2.05
ZNF541Q9H0D2 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.24□□□□□ -2.05
ZNF541Q9H0D2 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.23□□□□□ -2.05
ZNF541Q9H0D2 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.23□□□□□ -2.05
ZNF541Q9H0D2 MIRLET7G-201ENST00000362280 84 ntBASIC2.23□□□□□ -2.05
ZNF541Q9H0D2 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
ZNF541Q9H0D2 SNORA29-201ENST00000384183 140 ntBASIC2.23□□□□□ -2.05
ZNF541Q9H0D2 Y_RNA.540-201ENST00000384638 111 ntBASIC2.23□□□□□ -2.05
ZNF541Q9H0D2 MIR144-201ENST00000384886 86 ntBASIC2.23□□□□□ -2.05
ZNF541Q9H0D2 SNORA12-201ENST00000391162 147 ntBASIC2.23□□□□□ -2.05
ZNF541Q9H0D2 MTCO3P46-201ENST00000425787 232 ntBASIC2.23□□□□□ -2.05
ZNF541Q9H0D2 DAP3P1-201ENST00000441522 278 ntBASIC2.23□□□□□ -2.05
ZNF541Q9H0D2 HMGB3P3-201ENST00000510526 400 ntBASIC2.23□□□□□ -2.05
ZNF541Q9H0D2 RNU6-667P-201ENST00000517186 102 ntBASIC2.23□□□□□ -2.05
ZNF541Q9H0D2 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.23□□□□□ -2.05
ZNF541Q9H0D2 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.23□□□□□ -2.05
ZNF541Q9H0D2 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.23□□□□□ -2.05
ZNF541Q9H0D2 PRELID2P1-201ENST00000552837 301 ntBASIC2.23□□□□□ -2.05
ZNF541Q9H0D2 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC2.23□□□□□ -2.05
ZNF541Q9H0D2 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.23□□□□□ -2.05
ZNF541Q9H0D2 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.23□□□□□ -2.05
ZNF541Q9H0D2 AL133216.2-202ENST00000634512 349 ntBASIC2.23□□□□□ -2.05
ZNF541Q9H0D2 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
ZNF541Q9H0D2 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
ZNF541Q9H0D2 RNA5SP160-201ENST00000364866 120 ntBASIC2.22□□□□□ -2.05
ZNF541Q9H0D2 Y_RNA.303-201ENST00000364998 94 ntBASIC2.22□□□□□ -2.05
ZNF541Q9H0D2 SNORA6-201ENST00000384033 151 ntBASIC2.22□□□□□ -2.05
ZNF541Q9H0D2 MIR548F5-201ENST00000408421 86 ntBASIC2.22□□□□□ -2.05
ZNF541Q9H0D2 AC138393.2-201ENST00000414742 246 ntBASIC2.22□□□□□ -2.05
ZNF541Q9H0D2 RPS3AP52-201ENST00000435639 297 ntBASIC2.22□□□□□ -2.05
ZNF541Q9H0D2 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.22□□□□□ -2.05
ZNF541Q9H0D2 AC098614.3-201ENST00000438957 440 ntBASIC2.22□□□□□ -2.05
ZNF541Q9H0D2 snoU13.6-201ENST00000458785 104 ntBASIC2.22□□□□□ -2.05
ZNF541Q9H0D2 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.22□□□□□ -2.05
ZNF541Q9H0D2 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.22□□□□□ -2.05
ZNF541Q9H0D2 PTP4A1P4-201ENST00000512479 322 ntBASIC2.22□□□□□ -2.05
ZNF541Q9H0D2 MIR449C-201ENST00000516047 92 ntBASIC2.22□□□□□ -2.05
ZNF541Q9H0D2 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.22□□□□□ -2.05
ZNF541Q9H0D2 AC022616.8-201ENST00000533569 253 ntBASIC2.22□□□□□ -2.05
ZNF541Q9H0D2 AC026271.5-201ENST00000577873 130 ntBASIC2.22□□□□□ -2.05
ZNF541Q9H0D2 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC2.22□□□□□ -2.05
ZNF541Q9H0D2 AL078605.1-201ENST00000603529 500 ntBASIC2.22□□□□□ -2.05
ZNF541Q9H0D2 AP000654.2-201ENST00000605633 586 ntBASIC2.22□□□□□ -2.05
ZNF541Q9H0D2 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.22□□□□□ -2.05
ZNF541Q9H0D2 Y_RNA.279-201ENST00000364763 95 ntBASIC2.21□□□□□ -2.06
ZNF541Q9H0D2 RNU6-378P-201ENST00000384324 107 ntBASIC2.21□□□□□ -2.06
ZNF541Q9H0D2 SNORA46.1-201ENST00000391069 153 ntBASIC2.21□□□□□ -2.06
ZNF541Q9H0D2 RPL37P10-201ENST00000412884 288 ntBASIC2.21□□□□□ -2.06
ZNF541Q9H0D2 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.21□□□□□ -2.06
ZNF541Q9H0D2 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC2.21□□□□□ -2.06
ZNF541Q9H0D2 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.21□□□□□ -2.06
ZNF541Q9H0D2 AC121758.2-201ENST00000553271 193 ntBASIC2.21□□□□□ -2.06
ZNF541Q9H0D2 AC005730.3-201ENST00000583067 366 ntBASIC2.21□□□□□ -2.06
ZNF541Q9H0D2 uc_338.5-201ENST00000611839 155 ntBASIC2.21□□□□□ -2.06
ZNF541Q9H0D2 AC245884.12-201ENST00000615364 59 ntBASIC2.21□□□□□ -2.06
ZNF541Q9H0D2 PISRT1.1-201ENST00000616930 107 ntBASIC2.21□□□□□ -2.06
ZNF541Q9H0D2 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.21□□□□□ -2.06
ZNF541Q9H0D2 SNORA43.4-201ENST00000629559 138 ntBASIC2.21□□□□□ -2.06
ZNF541Q9H0D2 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.21□□□□□ -2.06
ZNF541Q9H0D2 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
ZNF541Q9H0D2 Y_RNA.2-201ENST00000362330 96 ntBASIC2.2□□□□□ -2.06
ZNF541Q9H0D2 Y_RNA.88-201ENST00000363029 99 ntBASIC2.2□□□□□ -2.06
ZNF541Q9H0D2 SNORD115-3-201ENST00000363100 82 ntBASIC2.2□□□□□ -2.06
ZNF541Q9H0D2 RNU6-1286P-201ENST00000383871 107 ntBASIC2.2□□□□□ -2.06
ZNF541Q9H0D2 RNU6-26P-201ENST00000383985 107 ntBASIC2.2□□□□□ -2.06
ZNF541Q9H0D2 RNU6-784P-201ENST00000384330 106 ntBASIC2.2□□□□□ -2.06
ZNF541Q9H0D2 SNORA67.5-201ENST00000391036 107 ntBASIC2.2□□□□□ -2.06
ZNF541Q9H0D2 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC2.2□□□□□ -2.06
ZNF541Q9H0D2 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC2.2□□□□□ -2.06
ZNF541Q9H0D2 RPL23AP7-203ENST00000449021 469 ntBASIC2.2□□□□□ -2.06
ZNF541Q9H0D2 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.2□□□□□ -2.06
ZNF541Q9H0D2 FO393415.2-201ENST00000480085 343 ntBASIC2.2□□□□□ -2.06
ZNF541Q9H0D2 RNU4ATAC7P-201ENST00000516280 125 ntBASIC2.2□□□□□ -2.06
ZNF541Q9H0D2 SNORA20.3-201ENST00000516880 132 ntBASIC2.2□□□□□ -2.06
ZNF541Q9H0D2 IGLV3-17-201ENST00000519099 244 ntBASIC2.2□□□□□ -2.06
ZNF541Q9H0D2 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.2□□□□□ -2.06
ZNF541Q9H0D2 AC016256.1-201ENST00000547971 354 ntBASIC2.2□□□□□ -2.06
ZNF541Q9H0D2 EIF4A1P12-201ENST00000551910 141 ntBASIC2.2□□□□□ -2.06
ZNF541Q9H0D2 SNORA4-201ENST00000584302 138 ntBASIC2.2□□□□□ -2.06
ZNF541Q9H0D2 PCGEM1.1-201ENST00000613431 131 ntBASIC2.2□□□□□ -2.06
ZNF541Q9H0D2 AC137590.2-201ENST00000619709 240 ntBASIC2.2□□□□□ -2.06
ZNF541Q9H0D2 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.2□□□□□ -2.06
ZNF541Q9H0D2 RNY3P14-201ENST00000384309 102 ntBASIC2.19□□□□□ -2.06
ZNF541Q9H0D2 MTCYBP2-201ENST00000407745 171 ntBASIC2.19□□□□□ -2.06
ZNF541Q9H0D2 MIR1276-201ENST00000408707 83 ntBASIC2.19□□□□□ -2.06
ZNF541Q9H0D2 RPL23AP50-201ENST00000434149 455 ntBASIC2.19□□□□□ -2.06
ZNF541Q9H0D2 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.19□□□□□ -2.06
ZNF541Q9H0D2 MTND1P17-201ENST00000448961 204 ntBASIC2.19□□□□□ -2.06
ZNF541Q9H0D2 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC2.19□□□□□ -2.06
ZNF541Q9H0D2 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.19□□□□□ -2.06
ZNF541Q9H0D2 MTND5P5-201ENST00000503764 376 ntBASIC2.19□□□□□ -2.06
ZNF541Q9H0D2 AC103851.1-201ENST00000506833 274 ntBASIC2.19□□□□□ -2.06
ZNF541Q9H0D2 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.19□□□□□ -2.06
ZNF541Q9H0D2 RNU5F-4P-201ENST00000516581 114 ntBASIC2.19□□□□□ -2.06
ZNF541Q9H0D2 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.19□□□□□ -2.06
ZNF541Q9H0D2 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC2.19□□□□□ -2.06
ZNF541Q9H0D2 AC090517.1-201ENST00000569307 266 ntBASIC2.19□□□□□ -2.06
ZNF541Q9H0D2 AC009127.3-201ENST00000570531 403 ntBASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms