Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 RNA5SP249-201ENST00000516127 99 ntBASIC4.37□□□□□ -1.71
HLA-CQ95604 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC4.37□□□□□ -1.71
HLA-CQ95604 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC4.37□□□□□ -1.71
HLA-CQ95604 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC4.37□□□□□ -1.71
HLA-CQ95604 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC4.37□□□□□ -1.71
HLA-CQ95604 U6.105-201ENST00000637379 88 ntBASIC4.37□□□□□ -1.71
HLA-CQ95604 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC4.37□□□□□ -1.71
HLA-CQ95604 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
HLA-CQ95604 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC4.37□□□□□ -1.71
HLA-CQ95604 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.37□□□□□ -1.71
HLA-CQ95604 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC4.36□□□□□ -1.71
HLA-CQ95604 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC4.36□□□□□ -1.71
HLA-CQ95604 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC4.36□□□□□ -1.71
HLA-CQ95604 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.36□□□□□ -1.71
HLA-CQ95604 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.36□□□□□ -1.71
HLA-CQ95604 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC4.36□□□□□ -1.71
HLA-CQ95604 RNU6-309P-201ENST00000364573 106 ntBASIC4.36□□□□□ -1.71
HLA-CQ95604 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC4.36□□□□□ -1.71
HLA-CQ95604 HSPE1P26-201ENST00000405341 275 ntBASIC4.36□□□□□ -1.71
HLA-CQ95604 MIR1294-201ENST00000408503 142 ntBASIC4.36□□□□□ -1.71
HLA-CQ95604 RPS29P4-201ENST00000414733 161 ntBASIC4.36□□□□□ -1.71
HLA-CQ95604 EIF4EP4-201ENST00000424916 578 ntBASIC4.36□□□□□ -1.71
HLA-CQ95604 RNU7-14P-201ENST00000459331 62 ntBASIC4.36□□□□□ -1.71
HLA-CQ95604 RPL27AP5-201ENST00000469428 449 ntBASIC4.36□□□□□ -1.71
HLA-CQ95604 AC006445.1-201ENST00000491925 405 ntBASIC4.36□□□□□ -1.71
HLA-CQ95604 RNU6-948P-201ENST00000516374 107 ntBASIC4.36□□□□□ -1.71
HLA-CQ95604 RNA5SP360-201ENST00000516555 118 ntBASIC4.36□□□□□ -1.71
HLA-CQ95604 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC4.36□□□□□ -1.71
HLA-CQ95604 AC015912.2-201ENST00000571053 181 ntBASIC4.36□□□□□ -1.71
HLA-CQ95604 MIR3124-201ENST00000582636 67 ntBASIC4.36□□□□□ -1.71
HLA-CQ95604 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC4.36□□□□□ -1.71
HLA-CQ95604 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC4.36□□□□□ -1.71
HLA-CQ95604 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC4.36□□□□□ -1.71
HLA-CQ95604 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.36□□□□□ -1.71
HLA-CQ95604 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC4.35□□□□□ -1.71
HLA-CQ95604 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.35□□□□□ -1.71
HLA-CQ95604 MTND5P18-201ENST00000445624 1801 ntBASIC4.35□□□□□ -1.71
HLA-CQ95604 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HLA-CQ95604 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
HLA-CQ95604 MIR450A1-201ENST00000362262 91 ntBASIC4.35□□□□□ -1.71
HLA-CQ95604 Y_RNA.52-201ENST00000362760 96 ntBASIC4.35□□□□□ -1.71
HLA-CQ95604 Y_RNA.91-201ENST00000363042 107 ntBASIC4.35□□□□□ -1.71
HLA-CQ95604 RNU1-63P-201ENST00000383902 164 ntBASIC4.35□□□□□ -1.71
HLA-CQ95604 MIR548A1-201ENST00000385041 97 ntBASIC4.35□□□□□ -1.71
HLA-CQ95604 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC4.35□□□□□ -1.71
HLA-CQ95604 AC097463.2-201ENST00000421074 142 ntBASIC4.35□□□□□ -1.71
HLA-CQ95604 AC245102.2-201ENST00000448956 180 ntBASIC4.35□□□□□ -1.71
HLA-CQ95604 SNORD11-201ENST00000459124 84 ntBASIC4.35□□□□□ -1.71
HLA-CQ95604 RPS29P19-201ENST00000479709 171 ntBASIC4.35□□□□□ -1.71
HLA-CQ95604 RN7SL323P-201ENST00000494712 295 ntBASIC4.35□□□□□ -1.71
HLA-CQ95604 RNU2-34P-201ENST00000516534 121 ntBASIC4.35□□□□□ -1.71
HLA-CQ95604 MIR4513-201ENST00000581077 86 ntBASIC4.35□□□□□ -1.71
HLA-CQ95604 AL022345.2-201ENST00000606307 135 ntBASIC4.35□□□□□ -1.71
HLA-CQ95604 U3.45-201ENST00000607547 219 ntBASIC4.35□□□□□ -1.71
HLA-CQ95604 AC091905.2-201ENST00000623143 306 ntBASIC4.35□□□□□ -1.71
HLA-CQ95604 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HLA-CQ95604 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.35□□□□□ -1.71
HLA-CQ95604 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.35□□□□□ -1.71
HLA-CQ95604 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC4.35□□□□□ -1.71
HLA-CQ95604 ATP7A-201ENST00000341514 8483 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
HLA-CQ95604 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.35□□□□□ -1.71
HLA-CQ95604 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC4.34□□□□□ -1.71
HLA-CQ95604 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC4.34□□□□□ -1.71
HLA-CQ95604 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HLA-CQ95604 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.34□□□□□ -1.71
HLA-CQ95604 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
HLA-CQ95604 RNVU1-14-201ENST00000384770 164 ntBASIC4.34□□□□□ -1.71
HLA-CQ95604 MIR562-201ENST00000384894 95 ntBASIC4.34□□□□□ -1.71
HLA-CQ95604 RNA5SP511-201ENST00000410487 115 ntBASIC4.34□□□□□ -1.71
HLA-CQ95604 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC4.34□□□□□ -1.71
HLA-CQ95604 CKS1BP6-201ENST00000424932 240 ntBASIC4.34□□□□□ -1.71
HLA-CQ95604 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC4.34□□□□□ -1.71
HLA-CQ95604 RN7SL293P-201ENST00000481765 281 ntBASIC4.34□□□□□ -1.71
HLA-CQ95604 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.34□□□□□ -1.71
HLA-CQ95604 RNU6-113P-201ENST00000516653 101 ntBASIC4.34□□□□□ -1.71
HLA-CQ95604 RPL23AP91-201ENST00000569211 455 ntBASIC4.34□□□□□ -1.71
HLA-CQ95604 uc_338.28-201ENST00000612082 187 ntBASIC4.34□□□□□ -1.71
HLA-CQ95604 MIR7151-201ENST00000617477 60 ntBASIC4.34□□□□□ -1.71
HLA-CQ95604 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HLA-CQ95604 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
HLA-CQ95604 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC4.34□□□□□ -1.72
HLA-CQ95604 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
HLA-CQ95604 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC4.34□□□□□ -1.72
HLA-CQ95604 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.72
HLA-CQ95604 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
HLA-CQ95604 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.72
HLA-CQ95604 XPO4-201ENST00000255305 9921 ntAPPRIS P2 TSL 1 (best) BASIC4.34□□□□□ -1.72
HLA-CQ95604 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.34□□□□□ -1.72
HLA-CQ95604 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.33□□□□□ -1.72
HLA-CQ95604 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
HLA-CQ95604 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.33□□□□□ -1.72
HLA-CQ95604 SNORD31B-201ENST00000364977 69 ntBASIC4.33□□□□□ -1.72
HLA-CQ95604 RNU6-106P-201ENST00000384405 107 ntBASIC4.33□□□□□ -1.72
HLA-CQ95604 RNU6-1235P-201ENST00000384559 107 ntBASIC4.33□□□□□ -1.72
HLA-CQ95604 U8.11-201ENST00000384699 133 ntBASIC4.33□□□□□ -1.72
HLA-CQ95604 MIR181A2-201ENST00000384863 110 ntBASIC4.33□□□□□ -1.72
HLA-CQ95604 RNU6-57P-201ENST00000411348 103 ntBASIC4.33□□□□□ -1.72
HLA-CQ95604 AF228730.3-201ENST00000436691 102 ntBASIC4.33□□□□□ -1.72
HLA-CQ95604 U8.18-201ENST00000459285 133 ntBASIC4.33□□□□□ -1.72
HLA-CQ95604 RNU6-498P-201ENST00000459468 107 ntBASIC4.33□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms