Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 VTRNA1-1-201ENST00000363120 99 ntBASIC3.3□□□□□ -1.88
ERCC4Q92889 AL451074.5-201ENST00000415894 435 ntBASIC3.3□□□□□ -1.88
ERCC4Q92889 AC005002.2-201ENST00000438228 269 ntBASIC3.3□□□□□ -1.88
ERCC4Q92889 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC3.3□□□□□ -1.88
ERCC4Q92889 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.3□□□□□ -1.88
ERCC4Q92889 Z96811.1-201ENST00000445880 108 ntBASIC3.3□□□□□ -1.88
ERCC4Q92889 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.3□□□□□ -1.88
ERCC4Q92889 AL441985.1-201ENST00000457727 251 ntBASIC3.3□□□□□ -1.88
ERCC4Q92889 RPS27P26-201ENST00000494583 239 ntBASIC3.3□□□□□ -1.88
ERCC4Q92889 RNU6-496P-201ENST00000516145 99 ntBASIC3.3□□□□□ -1.88
ERCC4Q92889 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.3□□□□□ -1.88
ERCC4Q92889 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.3□□□□□ -1.88
ERCC4Q92889 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC3.3□□□□□ -1.88
ERCC4Q92889 AL442067.1-201ENST00000613261 223 ntBASIC3.3□□□□□ -1.88
ERCC4Q92889 AC091953.5-201ENST00000622919 233 ntBASIC3.3□□□□□ -1.88
ERCC4Q92889 MIR622-201ENST00000638396 96 ntBASIC3.3□□□□□ -1.88
ERCC4Q92889 LEKR1-212ENST00000640869 237 ntTSL 5 BASIC3.3□□□□□ -1.88
ERCC4Q92889 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
ERCC4Q92889 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
ERCC4Q92889 BX322639.1-202ENST00000423987 2213 ntBASIC3.29□□□□□ -1.88
ERCC4Q92889 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.29□□□□□ -1.88
ERCC4Q92889 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.29□□□□□ -1.88
ERCC4Q92889 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC3.29□□□□□ -1.88
ERCC4Q92889 Y_RNA.20-201ENST00000362479 113 ntBASIC3.29□□□□□ -1.88
ERCC4Q92889 RNU1-35P-201ENST00000362782 153 ntBASIC3.29□□□□□ -1.88
ERCC4Q92889 SNORD56.5-201ENST00000364281 72 ntBASIC3.29□□□□□ -1.88
ERCC4Q92889 Y_RNA.237-201ENST00000364439 102 ntBASIC3.29□□□□□ -1.88
ERCC4Q92889 RNU6-937P-201ENST00000384325 106 ntBASIC3.29□□□□□ -1.88
ERCC4Q92889 Y_RNA.541-201ENST00000384640 113 ntBASIC3.29□□□□□ -1.88
ERCC4Q92889 Y_RNA.552-201ENST00000384665 112 ntBASIC3.29□□□□□ -1.88
ERCC4Q92889 SNORD58.1-201ENST00000391313 66 ntBASIC3.29□□□□□ -1.88
ERCC4Q92889 RNA5SP201-201ENST00000410316 124 ntBASIC3.29□□□□□ -1.88
ERCC4Q92889 HMGN2P35-201ENST00000412164 270 ntBASIC3.29□□□□□ -1.88
ERCC4Q92889 AC112220.1-201ENST00000434628 355 ntBASIC3.29□□□□□ -1.88
ERCC4Q92889 RNU6ATAC13P-201ENST00000516152 131 ntBASIC3.29□□□□□ -1.88
ERCC4Q92889 AL356575.1-201ENST00000603008 283 ntBASIC3.29□□□□□ -1.88
ERCC4Q92889 AC127459.3-201ENST00000624328 466 ntBASIC3.29□□□□□ -1.88
ERCC4Q92889 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.29□□□□□ -1.88
ERCC4Q92889 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
ERCC4Q92889 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.29□□□□□ -1.88
ERCC4Q92889 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
ERCC4Q92889 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
ERCC4Q92889 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC3.28□□□□□ -1.88
ERCC4Q92889 SNORD114-19-201ENST00000363072 75 ntBASIC3.28□□□□□ -1.88
ERCC4Q92889 RNU6-873P-201ENST00000363833 107 ntBASIC3.28□□□□□ -1.88
ERCC4Q92889 RNU6-280P-201ENST00000364145 104 ntBASIC3.28□□□□□ -1.88
ERCC4Q92889 Y_RNA.416-201ENST00000384014 113 ntBASIC3.28□□□□□ -1.88
ERCC4Q92889 MIR147B-201ENST00000390185 80 ntBASIC3.28□□□□□ -1.88
ERCC4Q92889 U3.26-201ENST00000391236 204 ntBASIC3.28□□□□□ -1.88
ERCC4Q92889 RNU2-20P-201ENST00000410425 191 ntBASIC3.28□□□□□ -1.88
ERCC4Q92889 UBBP3-201ENST00000445497 241 ntBASIC3.28□□□□□ -1.88
ERCC4Q92889 AC007395.1-201ENST00000451333 677 ntBASIC3.28□□□□□ -1.88
ERCC4Q92889 AP001324.2-201ENST00000461163 319 ntBASIC3.28□□□□□ -1.88
ERCC4Q92889 RPS27AP9-201ENST00000477681 438 ntBASIC3.28□□□□□ -1.88
ERCC4Q92889 GZMAP1-201ENST00000503054 631 ntBASIC3.28□□□□□ -1.88
ERCC4Q92889 RNU6-1338P-201ENST00000516328 91 ntBASIC3.28□□□□□ -1.88
ERCC4Q92889 AC083973.1-205ENST00000518994 601 ntTSL 2 BASIC3.28□□□□□ -1.88
ERCC4Q92889 AK6P2-201ENST00000549020 471 ntBASIC3.28□□□□□ -1.88
ERCC4Q92889 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
ERCC4Q92889 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.28□□□□□ -1.88
ERCC4Q92889 AC023043.3-201ENST00000593113 385 ntBASIC3.28□□□□□ -1.88
ERCC4Q92889 AL034555.1-201ENST00000604816 211 ntBASIC3.28□□□□□ -1.88
ERCC4Q92889 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.28□□□□□ -1.88
ERCC4Q92889 uc_338.14-201ENST00000613162 166 ntBASIC3.28□□□□□ -1.88
ERCC4Q92889 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
ERCC4Q92889 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.27□□□□□ -1.89
ERCC4Q92889 AL391987.6-201ENST00000305671 199 ntBASIC3.27□□□□□ -1.89
ERCC4Q92889 SNORD113-8-201ENST00000363497 74 ntBASIC3.27□□□□□ -1.89
ERCC4Q92889 RNU6-926P-201ENST00000384075 107 ntBASIC3.27□□□□□ -1.89
ERCC4Q92889 AL590004.2-201ENST00000404787 371 ntBASIC3.27□□□□□ -1.89
ERCC4Q92889 MIR548H3-201ENST00000408771 118 ntBASIC3.27□□□□□ -1.89
ERCC4Q92889 MIR1289-1-201ENST00000408836 144 ntBASIC3.27□□□□□ -1.89
ERCC4Q92889 RN7SKP220-201ENST00000410611 288 ntBASIC3.27□□□□□ -1.89
ERCC4Q92889 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC3.27□□□□□ -1.89
ERCC4Q92889 HSPE1P25-201ENST00000455484 251 ntBASIC3.27□□□□□ -1.89
ERCC4Q92889 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC3.27□□□□□ -1.89
ERCC4Q92889 RPL23AP70-201ENST00000483361 460 ntBASIC3.27□□□□□ -1.89
ERCC4Q92889 RNA5SP76-201ENST00000516277 87 ntBASIC3.27□□□□□ -1.89
ERCC4Q92889 AC079598.5-201ENST00000547460 117 ntBASIC3.27□□□□□ -1.89
ERCC4Q92889 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.27□□□□□ -1.89
ERCC4Q92889 MIR6733-201ENST00000635723 61 ntBASIC3.27□□□□□ -1.89
ERCC4Q92889 AC009487.2-201ENST00000420969 6821 ntBASIC3.27□□□□□ -1.89
ERCC4Q92889 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
ERCC4Q92889 RNA5SP374-201ENST00000362939 125 ntBASIC3.26□□□□□ -1.89
ERCC4Q92889 SNORA20.1-201ENST00000364790 130 ntBASIC3.26□□□□□ -1.89
ERCC4Q92889 RNU6-245P-201ENST00000384020 107 ntBASIC3.26□□□□□ -1.89
ERCC4Q92889 Y_RNA.477-201ENST00000384352 108 ntBASIC3.26□□□□□ -1.89
ERCC4Q92889 RNU6-102P-201ENST00000384485 104 ntBASIC3.26□□□□□ -1.89
ERCC4Q92889 Y_RNA.539-201ENST00000384635 107 ntBASIC3.26□□□□□ -1.89
ERCC4Q92889 CBX3P9-201ENST00000402326 552 ntBASIC3.26□□□□□ -1.89
ERCC4Q92889 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.26□□□□□ -1.89
ERCC4Q92889 AL445305.1-201ENST00000432577 575 ntBASIC3.26□□□□□ -1.89
ERCC4Q92889 AC073901.1-201ENST00000462471 408 ntBASIC3.26□□□□□ -1.89
ERCC4Q92889 Y_RNA.673-201ENST00000516306 88 ntBASIC3.26□□□□□ -1.89
ERCC4Q92889 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.26□□□□□ -1.89
ERCC4Q92889 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC3.26□□□□□ -1.89
ERCC4Q92889 MIR3923-201ENST00000579521 83 ntBASIC3.26□□□□□ -1.89
ERCC4Q92889 AL357075.2-201ENST00000614906 189 ntBASIC3.26□□□□□ -1.89
ERCC4Q92889 AC002064.3-201ENST00000623448 346 ntBASIC3.26□□□□□ -1.89
ERCC4Q92889 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 173.4 ms