Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AL021879.1-201ENST00000611756 288 ntBASIC3.34□□□□□ -1.87
SMC1BQ8NDV3 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC3.34□□□□□ -1.87
SMC1BQ8NDV3 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.88
SMC1BQ8NDV3 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
SMC1BQ8NDV3 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
SMC1BQ8NDV3 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.88
SMC1BQ8NDV3 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 RNU1-76P-201ENST00000362903 159 ntBASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 RNU6-486P-201ENST00000363116 107 ntBASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 Y_RNA.176-201ENST00000363815 109 ntBASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 RNU1-139P-201ENST00000391307 165 ntBASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 AL512633.1-201ENST00000399931 655 ntBASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 MIR1287-201ENST00000408492 90 ntBASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 AIMP1P2-201ENST00000425294 312 ntBASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 AL121594.1-201ENST00000475906 575 ntBASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 SEM1P1-201ENST00000506694 209 ntBASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 SNORA25.11-201ENST00000515935 105 ntBASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 RNA5SP217-201ENST00000515959 91 ntBASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 SCARNA17.1-201ENST00000516211 143 ntBASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 RNU2-53P-201ENST00000516257 147 ntBASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 SCARNA17.2-201ENST00000516334 143 ntBASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 AC103810.1-201ENST00000579873 453 ntBASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 AC008739.2-201ENST00000597006 317 ntBASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 AP000942.4-201ENST00000604811 241 ntBASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 PRR13P7-201ENST00000605538 430 ntBASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 SCARNA17.4-201ENST00000614296 143 ntBASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 DLEU2_2.2-201ENST00000615474 90 ntBASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.33□□□□□ -1.88
SMC1BQ8NDV3 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
SMC1BQ8NDV3 RNU5F-3P-201ENST00000363767 117 ntBASIC3.32□□□□□ -1.88
SMC1BQ8NDV3 SNORD115-8-201ENST00000363856 82 ntBASIC3.32□□□□□ -1.88
SMC1BQ8NDV3 SNORD115-38-201ENST00000365037 82 ntBASIC3.32□□□□□ -1.88
SMC1BQ8NDV3 MIR208B-201ENST00000401172 77 ntBASIC3.32□□□□□ -1.88
SMC1BQ8NDV3 MIR1302-3-201ENST00000408128 138 ntBASIC3.32□□□□□ -1.88
SMC1BQ8NDV3 RN7SKP58-201ENST00000411010 305 ntBASIC3.32□□□□□ -1.88
SMC1BQ8NDV3 RNA5SP344-201ENST00000411081 104 ntBASIC3.32□□□□□ -1.88
SMC1BQ8NDV3 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC3.32□□□□□ -1.88
SMC1BQ8NDV3 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC3.32□□□□□ -1.88
SMC1BQ8NDV3 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC3.32□□□□□ -1.88
SMC1BQ8NDV3 MRPS35P2-201ENST00000508242 191 ntBASIC3.32□□□□□ -1.88
SMC1BQ8NDV3 AC131281.1-201ENST00000522984 164 ntBASIC3.32□□□□□ -1.88
SMC1BQ8NDV3 AC007536.1-201ENST00000533382 349 ntBASIC3.32□□□□□ -1.88
SMC1BQ8NDV3 AC027288.2-201ENST00000553028 243 ntBASIC3.32□□□□□ -1.88
SMC1BQ8NDV3 AL670379.2-201ENST00000604983 252 ntBASIC3.32□□□□□ -1.88
SMC1BQ8NDV3 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SMC1BQ8NDV3 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
SMC1BQ8NDV3 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
SMC1BQ8NDV3 AC108206.1-201ENST00000570186 4159 ntBASIC3.31□□□□□ -1.88
SMC1BQ8NDV3 AC026241.1-201ENST00000517873 2142 ntBASIC3.31□□□□□ -1.88
SMC1BQ8NDV3 RNA5SP289-201ENST00000362332 137 ntBASIC3.31□□□□□ -1.88
SMC1BQ8NDV3 RNU6-196P-201ENST00000384315 107 ntBASIC3.31□□□□□ -1.88
SMC1BQ8NDV3 RNY3P4-201ENST00000384428 101 ntBASIC3.31□□□□□ -1.88
SMC1BQ8NDV3 CBX3P9-201ENST00000402326 552 ntBASIC3.31□□□□□ -1.88
SMC1BQ8NDV3 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC3.31□□□□□ -1.88
SMC1BQ8NDV3 AP000705.1-201ENST00000454567 350 ntBASIC3.31□□□□□ -1.88
SMC1BQ8NDV3 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.31□□□□□ -1.88
SMC1BQ8NDV3 RN7SL20P-201ENST00000488827 297 ntBASIC3.31□□□□□ -1.88
SMC1BQ8NDV3 RNU6-635P-201ENST00000516651 102 ntBASIC3.31□□□□□ -1.88
SMC1BQ8NDV3 RNU6-58P-201ENST00000517143 103 ntBASIC3.31□□□□□ -1.88
SMC1BQ8NDV3 SNORA31.26-201ENST00000517250 137 ntBASIC3.31□□□□□ -1.88
SMC1BQ8NDV3 HSPE1P20-201ENST00000538133 289 ntBASIC3.31□□□□□ -1.88
SMC1BQ8NDV3 AC005520.5-201ENST00000613926 164 ntBASIC3.31□□□□□ -1.88
SMC1BQ8NDV3 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.31□□□□□ -1.88
SMC1BQ8NDV3 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC3.31□□□□□ -1.88
SMC1BQ8NDV3 AP003122.5-201ENST00000527668 3766 ntBASIC3.31□□□□□ -1.88
SMC1BQ8NDV3 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
SMC1BQ8NDV3 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 Y_RNA.118-201ENST00000363300 101 ntBASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 RNU6-280P-201ENST00000364145 104 ntBASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 Y_RNA.210-201ENST00000364161 110 ntBASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 RNU6-879P-201ENST00000364328 108 ntBASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 Y_RNA.471-201ENST00000384312 102 ntBASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 RNU6-159P-201ENST00000391080 106 ntBASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 RNU6-1093P-201ENST00000391194 107 ntBASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 MIR320B2-201ENST00000408479 138 ntBASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 AC073910.1-201ENST00000445047 438 ntBASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 U8.22-201ENST00000459141 133 ntBASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 SRP72-202ENST00000504757 745 ntTSL 2 BASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 MTCO2P24-201ENST00000515611 426 ntBASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 RNU1-143P-201ENST00000516296 146 ntBASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 AC034114.1-201ENST00000520293 285 ntBASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 AL121655.1-201ENST00000605811 308 ntBASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 U1.23-201ENST00000610293 146 ntBASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 RNU1-68P-201ENST00000615382 146 ntBASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 AC005296.1-201ENST00000616145 209 ntBASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.3□□□□□ -1.88
SMC1BQ8NDV3 U1.39-201ENST00000621562 146 ntBASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms