Protein–RNA interactions for Protein: Q86TM3

DDX53, Probable ATP-dependent RNA helicase DDX53, humanhuman

Known RBP Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX53Q86TM3 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC3.26□□□□□ -1.89
DDX53Q86TM3 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.26□□□□□ -1.89
DDX53Q86TM3 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
DDX53Q86TM3 U6.104-201ENST00000637979 90 ntBASIC3.26□□□□□ -1.89
DDX53Q86TM3 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
DDX53Q86TM3 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.25□□□□□ -1.89
DDX53Q86TM3 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
DDX53Q86TM3 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.25□□□□□ -1.89
DDX53Q86TM3 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
DDX53Q86TM3 RNU6-727P-201ENST00000363592 107 ntBASIC3.25□□□□□ -1.89
DDX53Q86TM3 SNORA18.2-201ENST00000383865 132 ntBASIC3.25□□□□□ -1.89
DDX53Q86TM3 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.25□□□□□ -1.89
DDX53Q86TM3 RPL30P4-201ENST00000429309 333 ntBASIC3.25□□□□□ -1.89
DDX53Q86TM3 CBX3P6-201ENST00000430257 527 ntBASIC3.25□□□□□ -1.89
DDX53Q86TM3 TRBVB-201ENST00000477100 408 ntBASIC3.25□□□□□ -1.89
DDX53Q86TM3 RNU6-408P-201ENST00000515910 100 ntBASIC3.25□□□□□ -1.89
DDX53Q86TM3 RNU6-1271P-201ENST00000517049 105 ntBASIC3.25□□□□□ -1.89
DDX53Q86TM3 DEFB131C-201ENST00000528817 165 ntBASIC3.25□□□□□ -1.89
DDX53Q86TM3 RRN3P3-201ENST00000549207 578 ntBASIC3.25□□□□□ -1.89
DDX53Q86TM3 GTF3AP2-201ENST00000557014 266 ntBASIC3.25□□□□□ -1.89
DDX53Q86TM3 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC3.25□□□□□ -1.89
DDX53Q86TM3 AC026470.2-201ENST00000561492 181 ntBASIC3.25□□□□□ -1.89
DDX53Q86TM3 MIR3199-1-201ENST00000582434 88 ntBASIC3.25□□□□□ -1.89
DDX53Q86TM3 ELOCP29-201ENST00000588193 334 ntBASIC3.25□□□□□ -1.89
DDX53Q86TM3 AC005562.2-201ENST00000618264 111 ntBASIC3.25□□□□□ -1.89
DDX53Q86TM3 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC3.25□□□□□ -1.89
DDX53Q86TM3 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.25□□□□□ -1.89
DDX53Q86TM3 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
DDX53Q86TM3 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.24□□□□□ -1.89
DDX53Q86TM3 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.24□□□□□ -1.89
DDX53Q86TM3 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.24□□□□□ -1.89
DDX53Q86TM3 Y_RNA.84-201ENST00000363011 104 ntBASIC3.24□□□□□ -1.89
DDX53Q86TM3 snoU2_19.2-201ENST00000363024 80 ntBASIC3.24□□□□□ -1.89
DDX53Q86TM3 RNU6-961P-201ENST00000363893 105 ntBASIC3.24□□□□□ -1.89
DDX53Q86TM3 Y_RNA.307-201ENST00000365022 117 ntBASIC3.24□□□□□ -1.89
DDX53Q86TM3 SNORD21-201ENST00000383953 95 ntBASIC3.24□□□□□ -1.89
DDX53Q86TM3 AL139281.1-201ENST00000422120 335 ntBASIC3.24□□□□□ -1.89
DDX53Q86TM3 AC005002.2-201ENST00000438228 269 ntBASIC3.24□□□□□ -1.89
DDX53Q86TM3 RN7SL283P-201ENST00000489055 303 ntBASIC3.24□□□□□ -1.89
DDX53Q86TM3 AC083906.5-201ENST00000503722 328 ntBASIC3.24□□□□□ -1.89
DDX53Q86TM3 AC091826.1-201ENST00000514065 313 ntBASIC3.24□□□□□ -1.89
DDX53Q86TM3 RNA5SP356-201ENST00000515972 94 ntBASIC3.24□□□□□ -1.89
DDX53Q86TM3 RNA5SP367-201ENST00000516557 118 ntBASIC3.24□□□□□ -1.89
DDX53Q86TM3 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC3.24□□□□□ -1.89
DDX53Q86TM3 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.24□□□□□ -1.89
DDX53Q86TM3 AC010615.1-201ENST00000594254 1764 ntBASIC3.23□□□□□ -1.89
DDX53Q86TM3 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.23□□□□□ -1.89
DDX53Q86TM3 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
DDX53Q86TM3 RNU1-72P-201ENST00000362976 153 ntBASIC3.23□□□□□ -1.89
DDX53Q86TM3 SNORA68.1-201ENST00000364537 132 ntBASIC3.23□□□□□ -1.89
DDX53Q86TM3 SNORA18.3-201ENST00000384122 132 ntBASIC3.23□□□□□ -1.89
DDX53Q86TM3 MT-TG-201ENST00000387429 68 ntBASIC3.23□□□□□ -1.89
DDX53Q86TM3 Y_RNA.602-201ENST00000410535 92 ntBASIC3.23□□□□□ -1.89
DDX53Q86TM3 RNU2-25P-201ENST00000411041 191 ntBASIC3.23□□□□□ -1.89
DDX53Q86TM3 TRIAP1P1-201ENST00000427062 225 ntBASIC3.23□□□□□ -1.89
DDX53Q86TM3 AC004386.2-201ENST00000441858 148 ntBASIC3.23□□□□□ -1.89
DDX53Q86TM3 RPS12P18-201ENST00000442381 270 ntBASIC3.23□□□□□ -1.89
DDX53Q86TM3 AL135938.1-201ENST00000443141 297 ntBASIC3.23□□□□□ -1.89
DDX53Q86TM3 UQCRBP2-201ENST00000447827 297 ntBASIC3.23□□□□□ -1.89
DDX53Q86TM3 AC007395.1-201ENST00000451333 677 ntBASIC3.23□□□□□ -1.89
DDX53Q86TM3 SNORD127-201ENST00000458892 86 ntBASIC3.23□□□□□ -1.89
DDX53Q86TM3 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC3.23□□□□□ -1.89
DDX53Q86TM3 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.23□□□□□ -1.89
DDX53Q86TM3 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.23□□□□□ -1.89
DDX53Q86TM3 AC023157.2-201ENST00000540596 141 ntBASIC3.23□□□□□ -1.89
DDX53Q86TM3 AC104984.5-201ENST00000586878 94 ntBASIC3.23□□□□□ -1.89
DDX53Q86TM3 TCL6_2.1-201ENST00000615162 119 ntBASIC3.23□□□□□ -1.89
DDX53Q86TM3 AC073476.4-201ENST00000628409 72 ntBASIC3.23□□□□□ -1.89
DDX53Q86TM3 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
DDX53Q86TM3 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.22□□□□□ -1.89
DDX53Q86TM3 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.22□□□□□ -1.89
DDX53Q86TM3 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
DDX53Q86TM3 RNU1-62P-201ENST00000362599 164 ntBASIC3.22□□□□□ -1.89
DDX53Q86TM3 RNU6-626P-201ENST00000363354 107 ntBASIC3.22□□□□□ -1.89
DDX53Q86TM3 SNORD113-8-201ENST00000363497 74 ntBASIC3.22□□□□□ -1.89
DDX53Q86TM3 RNU6-20P-201ENST00000384106 107 ntBASIC3.22□□□□□ -1.89
DDX53Q86TM3 MIR29B2-201ENST00000385055 81 ntBASIC3.22□□□□□ -1.89
DDX53Q86TM3 Y_RNA.597-201ENST00000410463 100 ntBASIC3.22□□□□□ -1.89
DDX53Q86TM3 RNU6-1203P-201ENST00000410703 110 ntBASIC3.22□□□□□ -1.89
DDX53Q86TM3 RNU2-38P-201ENST00000410856 79 ntBASIC3.22□□□□□ -1.89
DDX53Q86TM3 AC004866.1-201ENST00000411748 78 ntBASIC3.22□□□□□ -1.89
DDX53Q86TM3 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC3.22□□□□□ -1.89
DDX53Q86TM3 AC096920.1-201ENST00000423991 241 ntBASIC3.22□□□□□ -1.89
DDX53Q86TM3 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.22□□□□□ -1.89
DDX53Q86TM3 MICF-203ENST00000432679 129 ntBASIC3.22□□□□□ -1.89
DDX53Q86TM3 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC3.22□□□□□ -1.89
DDX53Q86TM3 IFNA11P-201ENST00000446352 526 ntBASIC3.22□□□□□ -1.89
DDX53Q86TM3 RNU6-1132P-201ENST00000459214 107 ntBASIC3.22□□□□□ -1.89
DDX53Q86TM3 AC091179.1-201ENST00000461606 579 ntBASIC3.22□□□□□ -1.89
DDX53Q86TM3 AC117440.1-201ENST00000474107 571 ntBASIC3.22□□□□□ -1.89
DDX53Q86TM3 SCARNA3-201ENST00000517097 143 ntBASIC3.22□□□□□ -1.89
DDX53Q86TM3 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC3.22□□□□□ -1.89
DDX53Q86TM3 MDM2-232ENST00000544561 213 ntTSL 5 BASIC3.22□□□□□ -1.89
DDX53Q86TM3 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.22□□□□□ -1.89
DDX53Q86TM3 MIR3162-201ENST00000581818 82 ntBASIC3.22□□□□□ -1.89
DDX53Q86TM3 MIR5006-201ENST00000583027 110 ntBASIC3.22□□□□□ -1.89
DDX53Q86TM3 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
DDX53Q86TM3 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
DDX53Q86TM3 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
DDX53Q86TM3 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 8.8 ms