Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 RN7SKP61-201ENST00000410642 295 ntBASIC2.58□□□□□ -2
ZNF549Q6P9A3 AC023141.4-201ENST00000412031 328 ntBASIC2.58□□□□□ -2
ZNF549Q6P9A3 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.58□□□□□ -2
ZNF549Q6P9A3 SUMO1P3-201ENST00000439961 304 ntBASIC2.58□□□□□ -2
ZNF549Q6P9A3 HSPE1P25-201ENST00000455484 251 ntBASIC2.58□□□□□ -2
ZNF549Q6P9A3 RPL26P9-201ENST00000457466 433 ntBASIC2.58□□□□□ -2
ZNF549Q6P9A3 AL031183.1-201ENST00000457667 207 ntBASIC2.58□□□□□ -2
ZNF549Q6P9A3 AL049873.1-201ENST00000480540 376 ntBASIC2.58□□□□□ -2
ZNF549Q6P9A3 HMGB1P35-201ENST00000503360 598 ntBASIC2.58□□□□□ -2
ZNF549Q6P9A3 RNU6-1114P-201ENST00000516022 107 ntBASIC2.58□□□□□ -2
ZNF549Q6P9A3 RNU5B-3P-201ENST00000516601 115 ntBASIC2.58□□□□□ -2
ZNF549Q6P9A3 AC006199.1-201ENST00000548728 219 ntBASIC2.58□□□□□ -2
ZNF549Q6P9A3 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.58□□□□□ -2
ZNF549Q6P9A3 AC009163.5-201ENST00000575421 637 ntBASIC2.58□□□□□ -2
ZNF549Q6P9A3 MIR4643-201ENST00000577473 78 ntBASIC2.58□□□□□ -2
ZNF549Q6P9A3 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.58□□□□□ -2
ZNF549Q6P9A3 HMGN2P15-201ENST00000585707 270 ntBASIC2.58□□□□□ -2
ZNF549Q6P9A3 Y_RNA.772-201ENST00000606692 102 ntBASIC2.58□□□□□ -2
ZNF549Q6P9A3 AC127459.3-201ENST00000624328 466 ntBASIC2.58□□□□□ -2
ZNF549Q6P9A3 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.58□□□□□ -2
ZNF549Q6P9A3 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
ZNF549Q6P9A3 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
ZNF549Q6P9A3 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
ZNF549Q6P9A3 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC2.57□□□□□ -2
ZNF549Q6P9A3 SNORD113-8-201ENST00000363497 74 ntBASIC2.57□□□□□ -2
ZNF549Q6P9A3 RNU6-1141P-201ENST00000364520 107 ntBASIC2.57□□□□□ -2
ZNF549Q6P9A3 RNU6-1280P-201ENST00000365211 107 ntBASIC2.57□□□□□ -2
ZNF549Q6P9A3 Y_RNA.352-201ENST00000365439 102 ntBASIC2.57□□□□□ -2
ZNF549Q6P9A3 RNU6-281P-201ENST00000384212 103 ntBASIC2.57□□□□□ -2
ZNF549Q6P9A3 SNORD63-201ENST00000384262 68 ntBASIC2.57□□□□□ -2
ZNF549Q6P9A3 Y_RNA.515-201ENST00000384535 112 ntBASIC2.57□□□□□ -2
ZNF549Q6P9A3 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.57□□□□□ -2
ZNF549Q6P9A3 SNORA26.3-201ENST00000391119 136 ntBASIC2.57□□□□□ -2
ZNF549Q6P9A3 RNA5SP252-201ENST00000391131 119 ntBASIC2.57□□□□□ -2
ZNF549Q6P9A3 AP003170.3-201ENST00000399123 158 ntTSL 5 BASIC2.57□□□□□ -2
ZNF549Q6P9A3 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.57□□□□□ -2
ZNF549Q6P9A3 RPS15AP7-201ENST00000439294 405 ntBASIC2.57□□□□□ -2
ZNF549Q6P9A3 AL139109.1-201ENST00000455491 297 ntBASIC2.57□□□□□ -2
ZNF549Q6P9A3 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.57□□□□□ -2
ZNF549Q6P9A3 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC2.57□□□□□ -2
ZNF549Q6P9A3 NACAP3-201ENST00000552100 481 ntBASIC2.57□□□□□ -2
ZNF549Q6P9A3 UBL5P4-201ENST00000562584 236 ntBASIC2.57□□□□□ -2
ZNF549Q6P9A3 AC130289.1-201ENST00000577321 73 ntBASIC2.57□□□□□ -2
ZNF549Q6P9A3 MIR4423-201ENST00000580922 80 ntBASIC2.57□□□□□ -2
ZNF549Q6P9A3 MIR3670-2-201ENST00000582974 65 ntBASIC2.57□□□□□ -2
ZNF549Q6P9A3 MIR3670-1-201ENST00000584160 65 ntBASIC2.57□□□□□ -2
ZNF549Q6P9A3 MIR3670-3-201ENST00000584855 65 ntBASIC2.57□□□□□ -2
ZNF549Q6P9A3 AL078605.1-201ENST00000603529 500 ntBASIC2.57□□□□□ -2
ZNF549Q6P9A3 MIR3670-4-201ENST00000612260 65 ntBASIC2.57□□□□□ -2
ZNF549Q6P9A3 MIR7106-201ENST00000612419 65 ntBASIC2.57□□□□□ -2
ZNF549Q6P9A3 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC2.57□□□□□ -2
ZNF549Q6P9A3 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.57□□□□□ -2
ZNF549Q6P9A3 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.57□□□□□ -2
ZNF549Q6P9A3 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.57□□□□□ -2
ZNF549Q6P9A3 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.56□□□□□ -2
ZNF549Q6P9A3 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC2.56□□□□□ -2
ZNF549Q6P9A3 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.56□□□□□ -2
ZNF549Q6P9A3 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC2.56□□□□□ -2
ZNF549Q6P9A3 SNORD115-8-201ENST00000363856 82 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 SNORA80A-201ENST00000363922 136 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 SNORD115-38-201ENST00000365037 82 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 RNU6-209P-201ENST00000384118 107 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 Y_RNA.462-201ENST00000384268 102 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 Y_RNA.785-201ENST00000384290 109 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 Y_RNA.504-201ENST00000384481 104 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 RNU4-70P-201ENST00000384579 139 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 RNU6-159P-201ENST00000391080 106 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 AL603908.1-201ENST00000406098 201 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 RNU2-52P-201ENST00000410680 190 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 RNU6-1245P-201ENST00000411130 106 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.56□□□□□ -2
ZNF549Q6P9A3 AC005002.2-201ENST00000438228 269 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 AL714022.1-201ENST00000439897 151 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 AC025750.2-201ENST00000442609 450 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 ACA59.2-201ENST00000517061 156 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 RNU6-58P-201ENST00000517143 103 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 AC004486.1-201ENST00000546846 233 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 HSPE1P4-201ENST00000550617 308 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 GTF3AP2-201ENST00000557014 266 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 AC090897.2-201ENST00000581715 130 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 ELOCP29-201ENST00000588193 334 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 AL137843.1-201ENST00000605078 385 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 AL365434.2-201ENST00000607979 234 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 Z82195.2-201ENST00000612348 18351 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.56□□□□□ -2
ZNF549Q6P9A3 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
ZNF549Q6P9A3 HAUS6P2-201ENST00000433254 2404 ntBASIC2.56□□□□□ -2
ZNF549Q6P9A3 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
ZNF549Q6P9A3 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
ZNF549Q6P9A3 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.55□□□□□ -2
ZNF549Q6P9A3 RNU6-858P-201ENST00000362436 107 ntBASIC2.55□□□□□ -2
ZNF549Q6P9A3 RNU6-799P-201ENST00000363567 107 ntBASIC2.55□□□□□ -2
ZNF549Q6P9A3 Y_RNA.274-201ENST00000364714 101 ntBASIC2.55□□□□□ -2
ZNF549Q6P9A3 Y_RNA.286-201ENST00000364813 102 ntBASIC2.55□□□□□ -2
ZNF549Q6P9A3 Y_RNA.319-201ENST00000365138 92 ntBASIC2.55□□□□□ -2
ZNF549Q6P9A3 RNU6-487P-201ENST00000365430 104 ntBASIC2.55□□□□□ -2
ZNF549Q6P9A3 CD24P4-201ENST00000382840 243 ntBASIC2.55□□□□□ -2
ZNF549Q6P9A3 RNU6-926P-201ENST00000384075 107 ntBASIC2.55□□□□□ -2
ZNF549Q6P9A3 MIR329-1-201ENST00000385028 80 ntBASIC2.55□□□□□ -2
ZNF549Q6P9A3 Y_RNA.602-201ENST00000410535 92 ntBASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 87.5 ms