Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 RPL39P39-201ENST00000455840 151 ntBASIC-0.16□□□□□ -2.44
HSPG2P98160 snoU13.30-201ENST00000458951 104 ntBASIC-0.16□□□□□ -2.44
HSPG2P98160 AC026782.1-201ENST00000512952 449 ntBASIC-0.16□□□□□ -2.44
HSPG2P98160 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC-0.16□□□□□ -2.44
HSPG2P98160 CTHRC1P1-201ENST00000605383 469 ntBASIC-0.16□□□□□ -2.44
HSPG2P98160 AC008147.4-201ENST00000617570 1204 ntBASIC-0.16□□□□□ -2.44
HSPG2P98160 AL356094.1-201ENST00000624663 1212 ntBASIC-0.16□□□□□ -2.44
HSPG2P98160 RNU6-331P-201ENST00000384724 107 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC-0.17□□□□□ -2.44
HSPG2P98160 AL590632.1-201ENST00000424289 371 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 MTCO1P19-201ENST00000443487 500 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 OFD1P4Y-201ENST00000455273 1179 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 SNORD4A-201ENST00000459174 72 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 RNU6-416P-201ENST00000516265 103 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 AK6P2-201ENST00000549020 471 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 AL162424.1-201ENST00000602325 221 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 AL355816.2-201ENST00000610049 647 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC-0.17□□□□□ -2.44
HSPG2P98160 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 RNA5SP517-201ENST00000364724 117 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 Y_RNA.548-201ENST00000384656 105 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 SNORA75.2-201ENST00000391138 150 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 SNORA75.3-201ENST00000391231 150 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 AC013262.1-201ENST00000426710 252 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC-0.17□□□□□ -2.44
HSPG2P98160 MTND1P9-201ENST00000453775 944 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 TPT1P7-201ENST00000458300 517 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 TMEM251P1-201ENST00000503717 318 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC-0.17□□□□□ -2.44
HSPG2P98160 AC074133.1-201ENST00000515696 183 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 AL118556.2-201ENST00000614375 824 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 AL513423.1-201ENST00000621695 132 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 AP000943.4-201ENST00000622912 357 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 MIR4788-201ENST00000639104 80 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 MIR412-201ENST00000362142 91 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 RNU6-862P-201ENST00000362804 105 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 SNORD14C-201ENST00000365382 88 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 MIR593-201ENST00000384856 100 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 MIR643-201ENST00000385267 97 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 RPS20P2-201ENST00000402520 389 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 MTCO2P31-201ENST00000402702 684 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 RNU2-28P-201ENST00000410457 189 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC-0.17□□□□□ -2.44
HSPG2P98160 MTND4P25-201ENST00000441039 533 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 RNU7-34P-201ENST00000459394 64 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 AC079382.1-201ENST00000493346 557 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 RPF2P2-201ENST00000504693 896 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 RNU6-1096P-201ENST00000517089 102 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 AC093023.1-201ENST00000547375 507 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 MIR5695-201ENST00000579717 85 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC-0.17□□□□□ -2.44
HSPG2P98160 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.17□□□□□ -2.44
HSPG2P98160 PCGEM1.1-201ENST00000613431 131 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 MIR6738-201ENST00000619620 64 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 AL356596.1-201ENST00000624230 379 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 U6.101-201ENST00000637707 76 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 SMIM11P1-201ENST00000369586 178 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 MIR145-201ENST00000384967 88 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 MIR653-201ENST00000385279 96 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 MIR1305-201ENST00000408300 86 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 SNORA40.8-201ENST00000411034 126 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 CECR9-201ENST00000453421 199 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 AC079354.2-201ENST00000453523 154 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC-0.17□□□□□ -2.44
HSPG2P98160 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC-0.17□□□□□ -2.44
HSPG2P98160 snoU13.27-201ENST00000459278 104 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 AC026410.2-201ENST00000460281 156 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC-0.17□□□□□ -2.44
HSPG2P98160 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC-0.17□□□□□ -2.44
HSPG2P98160 RNU6-848P-201ENST00000515948 107 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 RNU6-617P-201ENST00000516147 107 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 RNU6-473P-201ENST00000516164 107 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 RNU6-1049P-201ENST00000516414 107 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 RNU5F-4P-201ENST00000516581 114 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 AC091163.3-201ENST00000518269 1144 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC-0.17□□□□□ -2.44
HSPG2P98160 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC-0.17□□□□□ -2.44
HSPG2P98160 AC090617.9-201ENST00000623751 147 ntBASIC-0.17□□□□□ -2.44
HSPG2P98160 UGP2-231ENST00000627474 264 ntTSL 5 BASIC-0.17□□□□□ -2.44
HSPG2P98160 SNORD114-12-201ENST00000365400 75 ntBASIC-0.18□□□□□ -2.44
HSPG2P98160 SNORA12-201ENST00000391162 147 ntBASIC-0.18□□□□□ -2.44
HSPG2P98160 RNU6-77P-201ENST00000410554 91 ntBASIC-0.18□□□□□ -2.44
HSPG2P98160 Y_RNA.616-201ENST00000410835 95 ntBASIC-0.18□□□□□ -2.44
HSPG2P98160 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC-0.18□□□□□ -2.44
HSPG2P98160 GXYLT1P1-201ENST00000446657 490 ntBASIC-0.18□□□□□ -2.44
HSPG2P98160 RPL39P6-201ENST00000448289 150 ntBASIC-0.18□□□□□ -2.44
HSPG2P98160 AP002001.1-203ENST00000534002 267 ntBASIC-0.18□□□□□ -2.44
HSPG2P98160 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC-0.18□□□□□ -2.44
HSPG2P98160 AC023157.2-201ENST00000540596 141 ntBASIC-0.18□□□□□ -2.44
HSPG2P98160 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC-0.18□□□□□ -2.44
HSPG2P98160 MIR4300-201ENST00000581016 96 ntBASIC-0.18□□□□□ -2.44
HSPG2P98160 SNORD113.3-201ENST00000364630 78 ntBASIC-0.18□□□□□ -2.44
HSPG2P98160 MIR16-1-201ENST00000385271 89 ntBASIC-0.18□□□□□ -2.44
HSPG2P98160 SNORD75.1-201ENST00000408373 60 ntBASIC-0.18□□□□□ -2.44
HSPG2P98160 MTND3P17-201ENST00000416968 344 ntBASIC-0.18□□□□□ -2.44
HSPG2P98160 AC010153.1-201ENST00000432862 727 ntBASIC-0.18□□□□□ -2.44
HSPG2P98160 GJE1-201ENST00000450456 916 ntAPPRIS P1 TSL 5 BASIC-0.18□□□□□ -2.44
HSPG2P98160 MED28P2-201ENST00000475771 317 ntBASIC-0.18□□□□□ -2.44
HSPG2P98160 RNU6-1098P-201ENST00000516772 96 ntBASIC-0.18□□□□□ -2.44
Retrieved 100 of 98,524 protein–RNA pairs in 117.7 ms